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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:961488..963128 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03590.1 vs.
Match: EWM30313.1 (hypothetical protein Naga_100003g121 [Nannochloropsis gaditana]) HSP 1 Score: 198.4 bits (503), Expect = 4.600e-47 Identity = 155/402 (38.56%), Postives = 215/402 (53.48%), Query Frame = 0
Query: 22 YLVLQLEQLVVQIEEHMNPSLVGHSFIVVVDPPSVQTEGGVDEGELHRTDLDSL-PLGVSAGAMRQGVRQNMSTGEIMHHFPVVMRVPAAAWRSPPSAPVLEAYRNLAERGPVRLLRRVVAGDGLKLLEDGKIGRLGQYSVQMQGTNEEEESESSSSSISVFLEQAKELGTFLQAELARLLGYRLVFGVGRTMEEARRNAKGLLLLRS-----KPPGKRHARTEVDHAHTDNHATERTEVQSPAEGEKYKTYARNCKGVLDSK---DEKE------EYGPLSLAEFICQTCKASFFKAVELLEHFQNEHEQNFQTKKMTARVPTRKPLYPSVETATSSDCSSKTEERLRDMRAASCLQLIPKSTPQLHPQGPGIITMSEILATRTTTADITTFLCEIGAPPI 409
+L+L+LE L VQIEEHMNPSL+G +F++V ++ E ++ DSL PL SA A G+RQNM+ G IM HFP V V AA+WRS S +L+ Y+N+A +GPV+LLRRVV GDGL L+ED G+ G+YSV + + E + + S +EQAKELG FL+AEL RLLGYRL FGVGRT+EEARR AKGLL+ R PP +RH E + D+ A + +G++ T+++N + + DE+E S+ C+T + +E+ Q K T RV P +D KT++ + A C Q S +L G G + MS IL T T +++ +FLC + AP I
Sbjct: 23 HLLLKLEHLFVQIEEHMNPSLIGRAFVIV---------DTLEAKEQQESEDDSLTPLDYSAEAFNSGIRQNMTLGFIMRHFPDVALVLAASWRSR-STSMLQEYQNVANKGPVQLLRRVVEGDGLTLVEDFGDGQFGEYSVALPTS----EHDCTRPSYLGEIEQAKELGGFLRAELKRLLGYRLTFGVGRTLEEARRTAKGLLVFRGDGSMPSPPLRRH--HENSFSGQDHDARPTSHGFFFEDGDESGTFSQNYESSNRQEIRVDEEEIVLGASMNRAWSMRSSKCRTSPSD-------VENAQQASHSGQAQKVSTNRV---APFCSQDTKLRVTDDKMKTQQ---CVEAFKCRQSTAISGHRLRLHGHGTVVMSWILDTFTDASELASFLCSVEAPSI 395
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03590.1 ID=NO02G03590.1|Name=NO02G03590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1641bp TATTCGTGCTTGTGTTTTGGGTGAGTGTTTGGTTGTATAGTAGGTGAGTG CACTATCAATATTACGGGATAGTCGTCAATCGTCCTGTCATGCGACCATG CACGACTAATAGTCGTCATACCCACCTGAGGAAAGCGAAGAAAAAGCGTG ACCGCAACCCAAAAGCTCAAGCGGGGTGGACTCGCGTCACGTTGACCTCC CTGCCTCTACCACAGCTATGATAATCACACCCCGCGCTCATTTCCAACCA ACCCCACGACAGGAAGCGCACATGTATACAAAGCTCTCCTTCCCCACGCG GCGATGGTTCCTTACAGCCTTGGCACGGAGGCGCTAGCTAGCGATGGACC AGCCTCCTCCTCCTTCCTTCATCAACCCCTTTGCCCTTCTTAATGACCAC ATGGCTTACCTCGTTCTTCAGCTCGAGCAGCTTGTTGTCCAGATTGAAGA GCACATGAACCCTTCACTCGTCGGGCATTCTTTTATCGTCGTCGTCGACC CTCCCTCAGTGCAAACGGAAGGCGGCGTCGACGAAGGCGAGCTGCACCGT ACGGACTTGGACTCACTACCCTTGGGCGTGAGCGCCGGGGCCATGCGGCA AGGCGTCCGGCAGAATATGTCCACGGGAGAAATTATGCATCACTTTCCAG TTGTGATGCGTGTTCCTGCTGCCGCGTGGCGGTCTCCTCCCTCCGCACCC GTCCTGGAGGCCTATCGCAACCTAGCTGAAAGGGGCCCTGTCAGGCTACT GCGTCGCGTGGTGGCGGGGGATGGACTGAAACTTCTCGAGGACGGCAAGA TTGGACGACTTGGTCAATACAGCGTACAGATGCAGGGTACAAATGAGGAG GAGGAAAGTGAGTCATCGTCTTCCTCCATTTCTGTCTTCCTCGAGCAGGC GAAAGAATTGGGGACCTTTTTGCAAGCCGAGTTAGCGCGCTTGCTGGGGT ATCGTCTCGTGTTTGGGGTGGGTAGGACGATGGAGGAAGCGCGCCGAAAT GCTAAGGGGTTGCTTTTGTTACGCTCGAAGCCACCGGGAAAGAGACACGC GAGGACTGAGGTCGACCACGCGCATACTGACAACCATGCCACAGAAAGGA CCGAGGTACAATCACCAGCGGAAGGAGAAAAATACAAGACGTATGCACGC AACTGCAAGGGCGTACTTGATTCGAAGGATGAGAAGGAAGAATACGGGCC ATTGAGCTTGGCTGAGTTCATATGCCAAACGTGTAAGGCTAGCTTTTTTA AGGCCGTTGAATTACTGGAACACTTCCAAAATGAGCACGAGCAAAACTTC CAGACCAAAAAAATGACAGCAAGGGTGCCAACACGGAAACCTCTGTACCC ATCTGTTGAAACAGCAACATCAAGTGATTGTAGTAGCAAGACCGAGGAAC GCCTTCGGGACATGCGTGCGGCATCTTGCTTGCAATTAATACCGAAGTCA ACGCCACAACTTCATCCACAAGGGCCTGGCATAATCACAATGAGCGAAAT CCTTGCCACTCGCACGACAACCGCGGATATCACAACATTTTTGTGCGAGA TTGGAGCGCCCCCCATTCATCTCCCGGGCTGGCCCCCACCACCTGGGTCT CAAGAAGAACAAGCAAAGAAATAAATTTATTACCACCAGAA back to topprotein sequence of NO02G03590.1 >NO02G03590.1-protein ID=NO02G03590.1-protein|Name=NO02G03590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=427bp MDQPPPPSFINPFALLNDHMAYLVLQLEQLVVQIEEHMNPSLVGHSFIVV VDPPSVQTEGGVDEGELHRTDLDSLPLGVSAGAMRQGVRQNMSTGEIMHH FPVVMRVPAAAWRSPPSAPVLEAYRNLAERGPVRLLRRVVAGDGLKLLED GKIGRLGQYSVQMQGTNEEEESESSSSSISVFLEQAKELGTFLQAELARL LGYRLVFGVGRTMEEARRNAKGLLLLRSKPPGKRHARTEVDHAHTDNHAT ERTEVQSPAEGEKYKTYARNCKGVLDSKDEKEEYGPLSLAEFICQTCKAS FFKAVELLEHFQNEHEQNFQTKKMTARVPTRKPLYPSVETATSSDCSSKT EERLRDMRAASCLQLIPKSTPQLHPQGPGIITMSEILATRTTTADITTFL CEIGAPPIHLPGWPPPPGSQEEQAKK* back to topmRNA from alignment at chr2:961488..963128- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03590.1 ID=NO02G03590.1|Name=NO02G03590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1641bp|location=Sequence derived from alignment at chr2:961488..963128- (Nannochloropsis oceanica) TATTCGTGCTTGTGTTTTGGGTGAGTGTTTGGTTGTATAGTAGGTGAGTG
CACTATCAATATTACGGGATAGTCGTCAATCGTCCTGTCATGCGACCATG
CACGACTAATAGTCGTCATACCCACCTGAGGAAAGCGAAGAAAAAGCGTG
ACCGCAACCCAAAAGCTCAAGCGGGGTGGACTCGCGTCACGTTGACCTCC
CTGCCTCTACCACAGCTATGATAATCACACCCCGCGCTCATTTCCAACCA
ACCCCACGACAGGAAGCGCACATGTATACAAAGCTCTCCTTCCCCACGCG
GCGATGGTTCCTTACAGCCTTGGCACGGAGGCGCTAGCTAGCGATGGACC
AGCCTCCTCCTCCTTCCTTCATCAACCCCTTTGCCCTTCTTAATGACCAC
ATGGCTTACCTCGTTCTTCAGCTCGAGCAGCTTGTTGTCCAGATTGAAGA
GCACATGAACCCTTCACTCGTCGGGCATTCTTTTATCGTCGTCGTCGACC
CTCCCTCAGTGCAAACGGAAGGCGGCGTCGACGAAGGCGAGCTGCACCGT
ACGGACTTGGACTCACTACCCTTGGGCGTGAGCGCCGGGGCCATGCGGCA
AGGCGTCCGGCAGAATATGTCCACGGGAGAAATTATGCATCACTTTCCAG
TTGTGATGCGTGTTCCTGCTGCCGCGTGGCGGTCTCCTCCCTCCGCACCC
GTCCTGGAGGCCTATCGCAACCTAGCTGAAAGGGGCCCTGTCAGGCTACT
GCGTCGCGTGGTGGCGGGGGATGGACTGAAACTTCTCGAGGACGGCAAGA
TTGGACGACTTGGTCAATACAGCGTACAGATGCAGGGTACAAATGAGGAG
GAGGAAAGTGAGTCATCGTCTTCCTCCATTTCTGTCTTCCTCGAGCAGGC
GAAAGAATTGGGGACCTTTTTGCAAGCCGAGTTAGCGCGCTTGCTGGGGT
ATCGTCTCGTGTTTGGGGTGGGTAGGACGATGGAGGAAGCGCGCCGAAAT
GCTAAGGGGTTGCTTTTGTTACGCTCGAAGCCACCGGGAAAGAGACACGC
GAGGACTGAGGTCGACCACGCGCATACTGACAACCATGCCACAGAAAGGA
CCGAGGTACAATCACCAGCGGAAGGAGAAAAATACAAGACGTATGCACGC
AACTGCAAGGGCGTACTTGATTCGAAGGATGAGAAGGAAGAATACGGGCC
ATTGAGCTTGGCTGAGTTCATATGCCAAACGTGTAAGGCTAGCTTTTTTA
AGGCCGTTGAATTACTGGAACACTTCCAAAATGAGCACGAGCAAAACTTC
CAGACCAAAAAAATGACAGCAAGGGTGCCAACACGGAAACCTCTGTACCC
ATCTGTTGAAACAGCAACATCAAGTGATTGTAGTAGCAAGACCGAGGAAC
GCCTTCGGGACATGCGTGCGGCATCTTGCTTGCAATTAATACCGAAGTCA
ACGCCACAACTTCATCCACAAGGGCCTGGCATAATCACAATGAGCGAAAT
CCTTGCCACTCGCACGACAACCGCGGATATCACAACATTTTTGTGCGAGA
TTGGAGCGCCCCCCATTCATCTCCCGGGCTGGCCCCCACCACCTGGGTCT
CAAGAAGAACAAGCAAAGAAATAAATTTATTACCACCAGAA back to topCoding sequence (CDS) from alignment at chr2:961488..963128- >NO02G03590.1 ID=NO02G03590.1|Name=NO02G03590.1|organism=Nannochloropsis oceanica|type=CDS|length=1281bp|location=Sequence derived from alignment at chr2:961488..963128- (Nannochloropsis oceanica) ATGGACCAGCCTCCTCCTCCTTCCTTCATCAACCCCTTTGCCCTTCTTAA TGACCACATGGCTTACCTCGTTCTTCAGCTCGAGCAGCTTGTTGTCCAGA TTGAAGAGCACATGAACCCTTCACTCGTCGGGCATTCTTTTATCGTCGTC GTCGACCCTCCCTCAGTGCAAACGGAAGGCGGCGTCGACGAAGGCGAGCT GCACCGTACGGACTTGGACTCACTACCCTTGGGCGTGAGCGCCGGGGCCA TGCGGCAAGGCGTCCGGCAGAATATGTCCACGGGAGAAATTATGCATCAC TTTCCAGTTGTGATGCGTGTTCCTGCTGCCGCGTGGCGGTCTCCTCCCTC CGCACCCGTCCTGGAGGCCTATCGCAACCTAGCTGAAAGGGGCCCTGTCA GGCTACTGCGTCGCGTGGTGGCGGGGGATGGACTGAAACTTCTCGAGGAC GGCAAGATTGGACGACTTGGTCAATACAGCGTACAGATGCAGGGTACAAA TGAGGAGGAGGAAAGTGAGTCATCGTCTTCCTCCATTTCTGTCTTCCTCG AGCAGGCGAAAGAATTGGGGACCTTTTTGCAAGCCGAGTTAGCGCGCTTG CTGGGGTATCGTCTCGTGTTTGGGGTGGGTAGGACGATGGAGGAAGCGCG CCGAAATGCTAAGGGGTTGCTTTTGTTACGCTCGAAGCCACCGGGAAAGA GACACGCGAGGACTGAGGTCGACCACGCGCATACTGACAACCATGCCACA GAAAGGACCGAGGTACAATCACCAGCGGAAGGAGAAAAATACAAGACGTA TGCACGCAACTGCAAGGGCGTACTTGATTCGAAGGATGAGAAGGAAGAAT ACGGGCCATTGAGCTTGGCTGAGTTCATATGCCAAACGTGTAAGGCTAGC TTTTTTAAGGCCGTTGAATTACTGGAACACTTCCAAAATGAGCACGAGCA AAACTTCCAGACCAAAAAAATGACAGCAAGGGTGCCAACACGGAAACCTC TGTACCCATCTGTTGAAACAGCAACATCAAGTGATTGTAGTAGCAAGACC GAGGAACGCCTTCGGGACATGCGTGCGGCATCTTGCTTGCAATTAATACC GAAGTCAACGCCACAACTTCATCCACAAGGGCCTGGCATAATCACAATGA GCGAAATCCTTGCCACTCGCACGACAACCGCGGATATCACAACATTTTTG TGCGAGATTGGAGCGCCCCCCATTCATCTCCCGGGCTGGCCCCCACCACC TGGGTCTCAAGAAGAACAAGCAAAGAAATAA back to top
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