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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:922985..924733 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G03440.1 vs.
Match: XP_005856371.1 (elongator complex protein 3 [Nannochloropsis gaditana CCMP526]; EKU19987.1 elongator complex protein 3 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 1051.2 bits (2717), Expect = 1.200e-303 Identity = 506/584 (86.64%), Postives = 541/584 (92.64%), Query Frame = 0
Query: 1 MAPHNQEVDQMQSRSSPAYLGCVAELVKELMHAYDARLPTNLTRLTADLARKRKLKAVPRLMDIIAAVPEDYRDKLLPFIKSKPVRTASGIAVVAVMCKPHRCPHIAMTGNVCVYCPGGPDSDFEYSTQAYTGYEPTSMRAIRARYHPYAQTRGRVDQLKRLGHSVDKVEFIVMGGTFMSLAEDYKDWFIRNLHDALSGHSSGSVAEAVAYMEQSQCKCIGITIETRPDYCLKPHLNEMLTYGCTRIEIGVQSIYEDVARDTNRGHTVHAVCNSFQLAKDCGFKVVTHMMPDLPNMGMERDLAGFQEFFENPLFRADGLKIYPTLVIRGTGLYELWKTGCYKNYNPDELVDLVAKLLALVPPWTRVYRIQRDIPMPLVSAGVENGNLRELALRRMAELDLPCKDVRTREVGIRAIHQSTRPQEVELVRRDYCANGGWETFLSYEDPHQDILIGLLRLRRPSGVSFRPEIKSGQASVVRELHVYGSAVPVHDRDPNKFQHQGYGTLLMEEAERIAWFEHGSEKLVVIAGVGTRHYYRKLGYELDGPYMSKWL--GGNEMGEMEGVQRYVRGKEEGWRDELQGLML 583
M P++ ++DQ Q+R SPAYL CVAELVKELMHA+DAR+PTNLTRLTADLARKRKLK +PRLMDIIAAVPE+YRDKLLPFIKSKPVRTASGIAVVAVMCKPHRCPHIAMTGNVCVYCPGGPDSDFEYSTQAYTGYEPTSMRAIRARYHPYAQTRGRVDQLKRLGHSVDKVEFIVMGGTFMSL+EDYKDWFIRNLHDALSGHSSGSVAEAVAYME S+ KCIGITIETRPD+CLKPHLNEML+YGCTRIEIGVQSIYEDVARDTNRGHTVHAVCNSFQLAK+CGFKVVTHMMPDLPNMGMERDL GF+EFFENPLFRADGLKIYPTLVIRGTGLYELWKTG YKNY PDEL+DL+AK+L+LVPPWTR+YRIQRDIPMPLV+AGVENGNLRELALRRMAELDLPC+DVRTREVGIR IHQS RP E+ELVRRDY ANGGWETFLSYEDPHQDILIGLLRLRRPS V+FRPEI + +SVVRELHVYGSAVP+HDRDPNKFQHQGYG LLMEEAERIA EHGS K+VVIAGVGTR+YYRKLGYEL+GPYMSK+L G E + + ++ G E DE GL L
Sbjct: 13 MPPNHSDIDQAQNRLSPAYLSCVAELVKELMHAFDARVPTNLTRLTADLARKRKLKIMPRLMDIIAAVPEEYRDKLLPFIKSKPVRTASGIAVVAVMCKPHRCPHIAMTGNVCVYCPGGPDSDFEYSTQAYTGYEPTSMRAIRARYHPYAQTRGRVDQLKRLGHSVDKVEFIVMGGTFMSLSEDYKDWFIRNLHDALSGHSSGSVAEAVAYMEHSESKCIGITIETRPDFCLKPHLNEMLSYGCTRIEIGVQSIYEDVARDTNRGHTVHAVCNSFQLAKECGFKVVTHMMPDLPNMGMERDLLGFREFFENPLFRADGLKIYPTLVIRGTGLYELWKTGQYKNYTPDELIDLMAKILSLVPPWTRIYRIQRDIPMPLVTAGVENGNLRELALRRMAELDLPCRDVRTREVGIRQIHQSARPHEIELVRRDYTANGGWETFLSYEDPHQDILIGLLRLRRPSAVTFRPEILNNFSSVVRELHVYGSAVPLHDRDPNKFQHQGYGRLLMEEAERIAKHEHGSAKIVVIAGVGTRNYYRKLGYELEGPYMSKYLQKGNRPPVEYQAGKMHIDGLE---MDERNGLQL 593
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G03440.1 ID=NO02G03440.1|Name=NO02G03440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp ATGGCGCCTCATAACCAGGAGGTCGACCAGATGCAGAGCCGATCCTCGCC GGCCTATCTGGGATGCGTGGCGGAGCTGGTCAAGGAACTAATGCACGCCT ACGATGCCCGCCTCCCCACAAACCTAACGCGCTTGACGGCCGACCTGGCC CGGAAGCGGAAGCTCAAAGCAGTGCCTCGTTTGATGGACATTATTGCGGC CGTGCCTGAGGACTACCGAGACAAGCTTTTGCCATTCATCAAGTCCAAGC CCGTGCGGACAGCCTCAGGCATTGCCGTGGTGGCCGTCATGTGCAAGCCC CATCGCTGCCCACACATCGCAATGACTGGCAATGTCTGCGTCTACTGCCC CGGCGGGCCTGACTCGGACTTTGAATATTCCACGCAGGCCTACACGGGAT ATGAACCCACAAGCATGCGGGCGATTCGGGCGAGGTACCATCCCTACGCG CAGACGCGCGGGCGTGTAGACCAGTTGAAGCGCTTGGGGCACAGCGTGGA CAAGGTAGAGTTTATCGTCATGGGTGGGACGTTCATGTCCTTGGCGGAGG ATTATAAGGACTGGTTTATTCGGAATTTACATGATGCTTTATCGGGACAT TCGTCTGGGAGTGTGGCGGAGGCTGTGGCTTACATGGAGCAAAGTCAATG CAAGTGTATCGGGATCACCATAGAGACCCGCCCGGACTACTGCCTCAAGC CTCACCTGAACGAAATGCTCACCTATGGCTGCACTCGCATCGAGATTGGG GTCCAAAGTATCTATGAAGACGTGGCGCGGGATACGAATCGAGGGCATAC TGTGCATGCTGTCTGCAACTCATTCCAGCTTGCAAAGGACTGCGGATTCA AAGTAGTCACGCACATGATGCCTGACCTCCCAAACATGGGCATGGAACGT GACTTGGCCGGTTTCCAGGAATTCTTTGAAAATCCCCTTTTTCGGGCTGA TGGCCTCAAGATCTACCCTACCCTCGTCATTCGTGGTACAGGCCTGTACG AGCTGTGGAAAACAGGCTGCTACAAAAACTACAACCCTGACGAGCTGGTT GACCTGGTGGCAAAGCTCCTTGCCCTCGTTCCACCCTGGACCCGCGTTTA TCGGATTCAACGCGATATTCCGATGCCACTTGTCTCAGCAGGAGTCGAAA ATGGGAATTTGCGGGAACTCGCGCTTAGACGGATGGCGGAGTTGGACTTG CCTTGTAAGGACGTGCGAACGCGAGAAGTGGGTATTCGGGCAATTCATCA GAGCACGCGCCCGCAGGAAGTCGAGTTAGTGCGCAGGGATTATTGTGCGA ATGGTGGGTGGGAGACATTTTTGAGTTATGAGGATCCCCATCAGGATATT TTGATTGGGTTGTTGCGGTTGCGGAGACCTAGTGGGGTGTCGTTTCGACC GGAGATAAAGTCGGGGCAAGCTTCGGTTGTAAGGGAGCTACACGTGTATG GTTCCGCGGTGCCGGTGCATGATCGGGATCCGAACAAATTCCAGCACCAG GGGTACGGGACGCTGTTGATGGAGGAGGCCGAGAGAATTGCCTGGTTTGA GCATGGGTCGGAAAAGTTGGTGGTTATTGCTGGGGTGGGGACGAGGCACT ATTACCGCAAGTTGGGTTATGAATTGGATGGACCTTACATGAGTAAATGG TTGGGAGGGAATGAAATGGGAGAGATGGAAGGAGTACAACGTTATGTAAG GGGGAAGGAGGAAGGCTGGAGGGATGAATTGCAGGGTTTAATGCTATGA back to topprotein sequence of NO02G03440.1 >NO02G03440.1-protein ID=NO02G03440.1-protein|Name=NO02G03440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp MAPHNQEVDQMQSRSSPAYLGCVAELVKELMHAYDARLPTNLTRLTADLA RKRKLKAVPRLMDIIAAVPEDYRDKLLPFIKSKPVRTASGIAVVAVMCKP HRCPHIAMTGNVCVYCPGGPDSDFEYSTQAYTGYEPTSMRAIRARYHPYA QTRGRVDQLKRLGHSVDKVEFIVMGGTFMSLAEDYKDWFIRNLHDALSGH SSGSVAEAVAYMEQSQCKCIGITIETRPDYCLKPHLNEMLTYGCTRIEIG VQSIYEDVARDTNRGHTVHAVCNSFQLAKDCGFKVVTHMMPDLPNMGMER DLAGFQEFFENPLFRADGLKIYPTLVIRGTGLYELWKTGCYKNYNPDELV DLVAKLLALVPPWTRVYRIQRDIPMPLVSAGVENGNLRELALRRMAELDL PCKDVRTREVGIRAIHQSTRPQEVELVRRDYCANGGWETFLSYEDPHQDI LIGLLRLRRPSGVSFRPEIKSGQASVVRELHVYGSAVPVHDRDPNKFQHQ GYGTLLMEEAERIAWFEHGSEKLVVIAGVGTRHYYRKLGYELDGPYMSKW LGGNEMGEMEGVQRYVRGKEEGWRDELQGLML* back to topmRNA from alignment at chr2:922985..924733+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G03440.1 ID=NO02G03440.1|Name=NO02G03440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp|location=Sequence derived from alignment at chr2:922985..924733+ (Nannochloropsis oceanica) ATGGCGCCTCATAACCAGGAGGTCGACCAGATGCAGAGCCGATCCTCGCC
GGCCTATCTGGGATGCGTGGCGGAGCTGGTCAAGGAACTAATGCACGCCT
ACGATGCCCGCCTCCCCACAAACCTAACGCGCTTGACGGCCGACCTGGCC
CGGAAGCGGAAGCTCAAAGCAGTGCCTCGTTTGATGGACATTATTGCGGC
CGTGCCTGAGGACTACCGAGACAAGCTTTTGCCATTCATCAAGTCCAAGC
CCGTGCGGACAGCCTCAGGCATTGCCGTGGTGGCCGTCATGTGCAAGCCC
CATCGCTGCCCACACATCGCAATGACTGGCAATGTCTGCGTCTACTGCCC
CGGCGGGCCTGACTCGGACTTTGAATATTCCACGCAGGCCTACACGGGAT
ATGAACCCACAAGCATGCGGGCGATTCGGGCGAGGTACCATCCCTACGCG
CAGACGCGCGGGCGTGTAGACCAGTTGAAGCGCTTGGGGCACAGCGTGGA
CAAGGTAGAGTTTATCGTCATGGGTGGGACGTTCATGTCCTTGGCGGAGG
ATTATAAGGACTGGTTTATTCGGAATTTACATGATGCTTTATCGGGACAT
TCGTCTGGGAGTGTGGCGGAGGCTGTGGCTTACATGGAGCAAAGTCAATG
CAAGTGTATCGGGATCACCATAGAGACCCGCCCGGACTACTGCCTCAAGC
CTCACCTGAACGAAATGCTCACCTATGGCTGCACTCGCATCGAGATTGGG
GTCCAAAGTATCTATGAAGACGTGGCGCGGGATACGAATCGAGGGCATAC
TGTGCATGCTGTCTGCAACTCATTCCAGCTTGCAAAGGACTGCGGATTCA
AAGTAGTCACGCACATGATGCCTGACCTCCCAAACATGGGCATGGAACGT
GACTTGGCCGGTTTCCAGGAATTCTTTGAAAATCCCCTTTTTCGGGCTGA
TGGCCTCAAGATCTACCCTACCCTCGTCATTCGTGGTACAGGCCTGTACG
AGCTGTGGAAAACAGGCTGCTACAAAAACTACAACCCTGACGAGCTGGTT
GACCTGGTGGCAAAGCTCCTTGCCCTCGTTCCACCCTGGACCCGCGTTTA
TCGGATTCAACGCGATATTCCGATGCCACTTGTCTCAGCAGGAGTCGAAA
ATGGGAATTTGCGGGAACTCGCGCTTAGACGGATGGCGGAGTTGGACTTG
CCTTGTAAGGACGTGCGAACGCGAGAAGTGGGTATTCGGGCAATTCATCA
GAGCACGCGCCCGCAGGAAGTCGAGTTAGTGCGCAGGGATTATTGTGCGA
ATGGTGGGTGGGAGACATTTTTGAGTTATGAGGATCCCCATCAGGATATT
TTGATTGGGTTGTTGCGGTTGCGGAGACCTAGTGGGGTGTCGTTTCGACC
GGAGATAAAGTCGGGGCAAGCTTCGGTTGTAAGGGAGCTACACGTGTATG
GTTCCGCGGTGCCGGTGCATGATCGGGATCCGAACAAATTCCAGCACCAG
GGGTACGGGACGCTGTTGATGGAGGAGGCCGAGAGAATTGCCTGGTTTGA
GCATGGGTCGGAAAAGTTGGTGGTTATTGCTGGGGTGGGGACGAGGCACT
ATTACCGCAAGTTGGGTTATGAATTGGATGGACCTTACATGAGTAAATGG
TTGGGAGGGAATGAAATGGGAGAGATGGAAGGAGTACAACGTTATGTAAG
GGGGAAGGAGGAAGGCTGGAGGGATGAATTGCAGGGTTTAATGCTATGA back to topCoding sequence (CDS) from alignment at chr2:922985..924733+ >NO02G03440.1 ID=NO02G03440.1|Name=NO02G03440.1|organism=Nannochloropsis oceanica|type=CDS|length=1749bp|location=Sequence derived from alignment at chr2:922985..924733+ (Nannochloropsis oceanica) ATGGCGCCTCATAACCAGGAGGTCGACCAGATGCAGAGCCGATCCTCGCC GGCCTATCTGGGATGCGTGGCGGAGCTGGTCAAGGAACTAATGCACGCCT ACGATGCCCGCCTCCCCACAAACCTAACGCGCTTGACGGCCGACCTGGCC CGGAAGCGGAAGCTCAAAGCAGTGCCTCGTTTGATGGACATTATTGCGGC CGTGCCTGAGGACTACCGAGACAAGCTTTTGCCATTCATCAAGTCCAAGC CCGTGCGGACAGCCTCAGGCATTGCCGTGGTGGCCGTCATGTGCAAGCCC CATCGCTGCCCACACATCGCAATGACTGGCAATGTCTGCGTCTACTGCCC CGGCGGGCCTGACTCGGACTTTGAATATTCCACGCAGGCCTACACGGGAT ATGAACCCACAAGCATGCGGGCGATTCGGGCGAGGTACCATCCCTACGCG CAGACGCGCGGGCGTGTAGACCAGTTGAAGCGCTTGGGGCACAGCGTGGA CAAGGTAGAGTTTATCGTCATGGGTGGGACGTTCATGTCCTTGGCGGAGG ATTATAAGGACTGGTTTATTCGGAATTTACATGATGCTTTATCGGGACAT TCGTCTGGGAGTGTGGCGGAGGCTGTGGCTTACATGGAGCAAAGTCAATG CAAGTGTATCGGGATCACCATAGAGACCCGCCCGGACTACTGCCTCAAGC CTCACCTGAACGAAATGCTCACCTATGGCTGCACTCGCATCGAGATTGGG GTCCAAAGTATCTATGAAGACGTGGCGCGGGATACGAATCGAGGGCATAC TGTGCATGCTGTCTGCAACTCATTCCAGCTTGCAAAGGACTGCGGATTCA AAGTAGTCACGCACATGATGCCTGACCTCCCAAACATGGGCATGGAACGT GACTTGGCCGGTTTCCAGGAATTCTTTGAAAATCCCCTTTTTCGGGCTGA TGGCCTCAAGATCTACCCTACCCTCGTCATTCGTGGTACAGGCCTGTACG AGCTGTGGAAAACAGGCTGCTACAAAAACTACAACCCTGACGAGCTGGTT GACCTGGTGGCAAAGCTCCTTGCCCTCGTTCCACCCTGGACCCGCGTTTA TCGGATTCAACGCGATATTCCGATGCCACTTGTCTCAGCAGGAGTCGAAA ATGGGAATTTGCGGGAACTCGCGCTTAGACGGATGGCGGAGTTGGACTTG CCTTGTAAGGACGTGCGAACGCGAGAAGTGGGTATTCGGGCAATTCATCA GAGCACGCGCCCGCAGGAAGTCGAGTTAGTGCGCAGGGATTATTGTGCGA ATGGTGGGTGGGAGACATTTTTGAGTTATGAGGATCCCCATCAGGATATT TTGATTGGGTTGTTGCGGTTGCGGAGACCTAGTGGGGTGTCGTTTCGACC GGAGATAAAGTCGGGGCAAGCTTCGGTTGTAAGGGAGCTACACGTGTATG GTTCCGCGGTGCCGGTGCATGATCGGGATCCGAACAAATTCCAGCACCAG GGGTACGGGACGCTGTTGATGGAGGAGGCCGAGAGAATTGCCTGGTTTGA GCATGGGTCGGAAAAGTTGGTGGTTATTGCTGGGGTGGGGACGAGGCACT ATTACCGCAAGTTGGGTTATGAATTGGATGGACCTTACATGAGTAAATGG TTGGGAGGGAATGAAATGGGAGAGATGGAAGGAGTACAACGTTATGTAAG GGGGAAGGAGGAAGGCTGGAGGGATGAATTGCAGGGTTTAATGCTATGA back to top
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