NO02G02940.1, NO02G02940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO02G02940.1
Unique NameNO02G02940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1644
Alignment locationchr2:790951..793003 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr2genomechr2:790951..793003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO02G02940.1 vs.
Match: XP_005853741.1 (hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526]; EKU22622.1 hypothetical protein NGA_0168202 [Nannochloropsis gaditana CCMP526]; EWM30397.1 hypothetical protein Naga_100026g9 [Nannochloropsis gaditana])

HSP 1 Score: 713.8 bits (1841), Expect = 4.200e-202
Identity = 398/585 (68.03%), Postives = 445/585 (76.07%), Query Frame = 0 
Query:    1 MHTPATTEPPPAGALVTPP-----------------NAANGTPAPASASMIPPPLVSSSAVSA-NTSSPKKQTPFVKPP------HQQQQPQFQR------------GSG---FVDVLRSMGSLTVSNAYDIREELRFLRRRRGKQEEAIVLSELAALASCLNELVVSTMTSNSGTGNPVGSSGSSGSSEEGGNKGEVGNKAGGGAVAVEPSRRSLVGMLSYEGLLPAFQHTAVPAPMAVLGDAALLHYCLEFLVEGRLEHRKQLGELALVCRQWRDLAQSERFWRPIVLQLFPRLSPTALDHDEEDPAAAGAASTTDASAATVAGVEANVAVAELGGGATGGVNDQTGPQAMVPDWYRKYLIQFGRCLFDRPVRQGPWHEGITLSFDLHDEQDGIRLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDRKLGALTSIEELFQEGDSGEYSVAFTIRVTARDERTGKMALLFSSGKRTKRWVEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPETVDPAERLYSVLPLDCAFMLQCKTEDQEQIGRFILAALENGPSLECD 547
            MH P T   PP   ++ PP                 NA +  P PA  ++ P P   SSA S  + +SP+KQ P ++        HQQQQ Q Q+            GSG   FVD+LRS+G LT++NA +IREELR LRRRRGKQEEA++LSELAALASCLNELV+S +TS+S   +  G SGS GS+EEGG +G+  +KAGGGAVAVEPSRR+L G+ SYEGL+P   H AVPAP   LGDAALLHYC +FLVEGRL++RKQLG+LALVCRQWRDLAQ++RFW+P+VLQLFPRLSP   DHDEED A   +    DA+A T A V+        G GA       T P      W+RKYLIQFGRCLFDRP+RQGPWHEGITLSFDLHDEQDG RLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDR LG L+SIEELFQEGDS +Y V+FTIRVTARDERTGKMALLFSS KRTKRWVEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPET+  AERLYSVL LDCAFMLQCKTEDQEQIGRFILAALENGP +E D
Sbjct:    1 MHKPTTAGTPP---VLVPPTKANVLAAGGPSGNTSINATSSVPPPAVYTIPPSPAAQSSASSLPSDASPRKQHPHLQAQYHTQLSHQQQQQQQQQHHALHHHQQGYQGSGTRGFVDLLRSLGHLTLNNASEIREELRHLRRRRGKQEEAVMLSELAALASCLNELVMSMVTSSSSNSSGPGGSGS-GSTEEGGGEGDSSSKAGGGAVAVEPSRRALAGLFSYEGLMPPIPHPAVPAPSTALGDAALLHYCFDFLVEGRLQYRKQLGDLALVCRQWRDLAQADRFWKPVVLQLFPRLSPALADHDEEDGA---SGPDPDAAALTEAAVD--------GAGAGASSEPSTSPGGRA-GWHRKYLIQFGRCLFDRPIRQGPWHEGITLSFDLHDEQDGTRLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDRGLGNLSSIEELFQEGDSRDYPVSFTIRVTARDERTGKMALLFSSAKRTKRWVEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPETISAAERLYSVLTLDCAFMLQCKTEDQEQIGRFILAALENGPGVERD 569
The following BLAST results are available for this feature:
BLAST of NO02G02940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853741.14.200e-20268.03hypothetical protein NGA_0168202 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO02G02940NO02G02940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO02G02940.1NO02G02940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO02G02940.1.cds1NO02G02940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02940.1.cds2NO02G02940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02940.1.cds3NO02G02940.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO02G02940.1.cds4NO02G02940.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO02G02940.1 ID=NO02G02940.1|Name=NO02G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1644bp
ATGCACACGCCCGCGACCACTGAACCGCCGCCCGCGGGTGCCCTAGTCAC
GCCACCTAACGCTGCGAATGGTACCCCTGCGCCGGCCTCGGCCAGCATGA
TCCCCCCTCCCCTCGTCTCGTCTTCCGCCGTCTCGGCCAATACTTCGTCT
CCCAAGAAGCAAACACCTTTTGTGAAACCACCCCACCAACAACAACAGCC
GCAATTTCAACGGGGCAGTGGATTTGTGGATGTACTTCGGTCAATGGGCA
GTCTCACAGTAAGCAATGCTTACGACATTCGAGAAGAGCTGCGGTTCTTA
CGCCGTCGCCGAGGCAAGCAAGAGGAAGCCATCGTCCTGTCCGAGCTGGC
GGCGCTGGCGTCGTGCTTGAACGAGCTGGTTGTGTCCACGATGACGAGCA
ACAGCGGAACTGGCAACCCGGTAGGGAGCAGCGGCAGCAGCGGGTCGAGC
GAAGAAGGGGGTAATAAGGGCGAGGTGGGGAATAAGGCCGGAGGTGGTGC
GGTGGCAGTGGAGCCTTCCCGACGTTCCTTAGTTGGTATGTTGTCGTATG
AGGGTCTGTTGCCTGCTTTTCAGCATACGGCAGTGCCTGCACCGATGGCT
GTGTTGGGTGACGCGGCATTGTTGCATTATTGCTTGGAGTTCTTGGTGGA
AGGGCGATTGGAGCATCGGAAGCAGTTGGGGGAGTTGGCGTTGGTCTGTC
GGCAGTGGCGGGACTTGGCTCAGTCGGAACGCTTTTGGAGGCCCATTGTG
TTGCAGCTTTTCCCCCGACTGAGCCCCACAGCTTTGGATCATGACGAGGA
GGACCCTGCGGCTGCAGGGGCCGCCTCGACTACAGATGCCTCTGCGGCGA
CAGTGGCAGGGGTTGAGGCTAACGTGGCGGTGGCTGAGCTCGGGGGAGGA
GCCACTGGAGGGGTGAATGATCAAACGGGGCCGCAGGCGATGGTGCCGGA
TTGGTACCGGAAGTATTTGATTCAATTTGGACGGTGCTTGTTTGATCGGC
CGGTTCGACAGGGGCCATGGCACGAGGGGATTACGCTGTCGTTTGATTTG
CACGATGAGCAGGATGGCATCCGCTTGTTTTCGTCGACGGGCCCGATTCG
GTTCACGGGGACCACGATCCCGGGGATTACTGCCATGAAGCTCACCGGCC
GTCGTCGTCGCGTCACGGCTCCTTTCTCCGCCGCGTCCCGCGACCGCAAG
CTCGGCGCGCTTACGTCCATCGAAGAACTCTTCCAAGAAGGGGACTCGGG
CGAATACTCCGTCGCCTTCACCATCCGTGTCACGGCCCGCGACGAACGTA
CCGGCAAGATGGCCTTGCTCTTCTCTTCGGGAAAACGAACGAAACGATGG
GTAGAACCATTGGGGGAGGATATGGGGGTGCCTCAAGGCACGCTGTTGGT
AAATCAAGGTTGGTCGCGGGTAACTATCCCATCAACCGATCTAGCTATGC
AGATGCTGACCGTTTTTTATGTGGCGCCGGTGGAAGGCCAGCCGGAGACG
GTTGATCCGGCCGAGCGGCTTTATTCGGTATTGCCGCTTGATTGTGCATT
CATGCTGCAGTGTAAGACAGAGGACCAGGAGCAGATAGGTCGATTCATCC
TGGCTGCCTTGGAGAACGGCCCGAGCTTAGAGTGTGACAGTTGA
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protein sequence of NO02G02940.1

>NO02G02940.1-protein ID=NO02G02940.1-protein|Name=NO02G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=548bp
MHTPATTEPPPAGALVTPPNAANGTPAPASASMIPPPLVSSSAVSANTSS
PKKQTPFVKPPHQQQQPQFQRGSGFVDVLRSMGSLTVSNAYDIREELRFL
RRRRGKQEEAIVLSELAALASCLNELVVSTMTSNSGTGNPVGSSGSSGSS
EEGGNKGEVGNKAGGGAVAVEPSRRSLVGMLSYEGLLPAFQHTAVPAPMA
VLGDAALLHYCLEFLVEGRLEHRKQLGELALVCRQWRDLAQSERFWRPIV
LQLFPRLSPTALDHDEEDPAAAGAASTTDASAATVAGVEANVAVAELGGG
ATGGVNDQTGPQAMVPDWYRKYLIQFGRCLFDRPVRQGPWHEGITLSFDL
HDEQDGIRLFSSTGPIRFTGTTIPGITAMKLTGRRRRVTAPFSAASRDRK
LGALTSIEELFQEGDSGEYSVAFTIRVTARDERTGKMALLFSSGKRTKRW
VEPLGEDMGVPQGTLLVNQGWSRVTIPSTDLAMQMLTVFYVAPVEGQPET
VDPAERLYSVLPLDCAFMLQCKTEDQEQIGRFILAALENGPSLECDS*
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mRNA from alignment at chr2:790951..793003+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO02G02940.1 ID=NO02G02940.1|Name=NO02G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2053bp|location=Sequence derived from alignment at chr2:790951..793003+ (Nannochloropsis oceanica)
ATGCACACGCCCGCGACCACTGAACCGCCGCCCGCGGGTGCCCTAGTCAC
GCCACCTAACGCTGCGAATGGTACCCCTGCGCCGGCCTCGGCCAGCATGA
TCCCCCCTCCCCTCGTCTCGTCTTCCGCCGTCTCGGCCAATACTTCGTCT
CCCAAGAAGCAAACACCTTTTGTGAAACCACCCCACCAACAACAACAGCC
GCAATTTCAACGGGGCAGTGGATTTGTGGATGTACTTCGGTCAATGGGCA
GTCTCACAGTAAGCAATGCTTACGACATTCGAGAAGAGCTGCGGTTCTTA
CGCCGTCGCCGAGGCAAGCAAGAGGAAGCCATCGTCCTGTCCGAGCTGGC
GGCGCTGGCGTCGTGCTTGAACGAGCTGGTTGTGTCCACGATGACGAGCA
ACAGCGGAACTGGCAACCCGGTAGGGAGCAGCGGCAGCAGCGGGTCGAGC
GAAGAAGGGGGTAATAAGGGCGAGGTGGGGAATAAGGCCGGAGGTGGTGC
GGTGGCAGTGGAGCCTTCCCGACGTTCCTTAGTTGGTATGTTGTCGTATG
AGGGTCTGTTGCCTGCTTTTCAGCATACGGCAGTGCCTGCACCGATGGCT
GTGTTGGGTGACGCGGCATTGTTGCATTATTGCTTGGAGTTCTTGGTGGA
AGGGCGATTGGAGCATCGGAAGCAGTTGGGGGAGTTGGCGTTGGTCTGTC
GGCAGTGGCGGGACTTGGCTCAGTCGGAACGCTTTTGGAGGCCCATTGTG
TTGCAGCTTTTCCCCCGACTGAGCCCCACAGCTTTGGATCATGACGAGGA
GGACCCTGCGGCTGCAGGGGCCGCCTCGACTACAGATGCCTCTGCGGCGA
CAGTGGCAGGGGTTGAGGCTAACGTGGCGGTGGCTGAGCTCGGGGGAGGA
GCCACTGGAGGGGTGAATGATCAAACGGGGCCGCAGGCGATGGTGCCGGA
TTGGTACCGGAAGTATTTGATTCAATTTGGACGGTGCTTGTTTGATCGGC
CGGTTCGACAGGGGTAAGTCAAGGCGGGAAGAAAGGAGGAAAGCGTGGTT
GTTATTTGTTGGAGGGGTGAACGAAAGAAAGAGAGAGGGAAAGATTGCAG
GGAAGGTATTCACATGTACATCTGTACACTACGCATGACAGGCCATGGCA
CGAGGGGATTACGCTGTCGTTTGATTTGCACGATGAGCAGGATGGCATCC
GCTTGTTTTCGTCGACGGGCCCGATTCGGTTCACGGGGACCACGATCCCG
GGGATGTACGTGCATGGATGGAGGGACAGGGGGAGGGAGGGAGGGAAGAA
GTGAGGGGGCGGAGGAAGGAAAGGACGTCCGTGCGTATTGTTGATCTCAA
TGTGTCTTTCTCACTTTTATCTACTTTTTAACTTCTCTGCCTTGGATTAG
TACTGCCATGAAGCTCACCGGCCGTCGTCGTCGCGTCACGGCTCCTTTCT
CCGCCGCGTCCCGCGACCGCAAGCTCGGCGCGCTTACGTCCATCGAAGAA
CTCTTCCAAGAAGGGGACTCGGGCGAATACTCCGTCGCCTTCACCATCCG
TGTCACGGCCCGCGACGAACGTACCGGCAAGATGGCCTTGCTCTTCTCTT
CGGGAAAACGAACGAAACGATGGGTAGAACCATTGGGGGAGGATATGGGG
GTGCCTCAAGGCACGCTGTTGGTAAATCAAGGTTGGTCGCGGGTAACTAT
CCCATCAACCGATCTAGCTATGCAGATGCTGACCGTTTTTTATGTGGCGC
CGGTGGAAGGCCAGCCGGAGACGGTTGATCCGGCCGAGCGGCTTTATTCG
GTATTGCCGCTTGATTGTGCATTCATGCTGCAGTGTAAGACAGAGGTAAG
CCAGAGGAAGGGGAGGAGAAAGAGGTAGGACACAGGCTAAACCTTTTGCG
AATAAATAGGAAACAAACGTTTCGCCTAGGTACATCCACATCTCACCTGT
ACCTCCTTGACACACTTCTGTATTCAAACAGGACCAGGAGCAGATAGGTC
GATTCATCCTGGCTGCCTTGGAGAACGGCCCGAGCTTAGAGTGTGACAGT
TGA
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Coding sequence (CDS) from alignment at chr2:790951..793003+

>NO02G02940.1 ID=NO02G02940.1|Name=NO02G02940.1|organism=Nannochloropsis oceanica|type=CDS|length=1644bp|location=Sequence derived from alignment at chr2:790951..793003+ (Nannochloropsis oceanica)
ATGCACACGCCCGCGACCACTGAACCGCCGCCCGCGGGTGCCCTAGTCAC
GCCACCTAACGCTGCGAATGGTACCCCTGCGCCGGCCTCGGCCAGCATGA
TCCCCCCTCCCCTCGTCTCGTCTTCCGCCGTCTCGGCCAATACTTCGTCT
CCCAAGAAGCAAACACCTTTTGTGAAACCACCCCACCAACAACAACAGCC
GCAATTTCAACGGGGCAGTGGATTTGTGGATGTACTTCGGTCAATGGGCA
GTCTCACAGTAAGCAATGCTTACGACATTCGAGAAGAGCTGCGGTTCTTA
CGCCGTCGCCGAGGCAAGCAAGAGGAAGCCATCGTCCTGTCCGAGCTGGC
GGCGCTGGCGTCGTGCTTGAACGAGCTGGTTGTGTCCACGATGACGAGCA
ACAGCGGAACTGGCAACCCGGTAGGGAGCAGCGGCAGCAGCGGGTCGAGC
GAAGAAGGGGGTAATAAGGGCGAGGTGGGGAATAAGGCCGGAGGTGGTGC
GGTGGCAGTGGAGCCTTCCCGACGTTCCTTAGTTGGTATGTTGTCGTATG
AGGGTCTGTTGCCTGCTTTTCAGCATACGGCAGTGCCTGCACCGATGGCT
GTGTTGGGTGACGCGGCATTGTTGCATTATTGCTTGGAGTTCTTGGTGGA
AGGGCGATTGGAGCATCGGAAGCAGTTGGGGGAGTTGGCGTTGGTCTGTC
GGCAGTGGCGGGACTTGGCTCAGTCGGAACGCTTTTGGAGGCCCATTGTG
TTGCAGCTTTTCCCCCGACTGAGCCCCACAGCTTTGGATCATGACGAGGA
GGACCCTGCGGCTGCAGGGGCCGCCTCGACTACAGATGCCTCTGCGGCGA
CAGTGGCAGGGGTTGAGGCTAACGTGGCGGTGGCTGAGCTCGGGGGAGGA
GCCACTGGAGGGGTGAATGATCAAACGGGGCCGCAGGCGATGGTGCCGGA
TTGGTACCGGAAGTATTTGATTCAATTTGGACGGTGCTTGTTTGATCGGC
CGGTTCGACAGGGGCCATGGCACGAGGGGATTACGCTGTCGTTTGATTTG
CACGATGAGCAGGATGGCATCCGCTTGTTTTCGTCGACGGGCCCGATTCG
GTTCACGGGGACCACGATCCCGGGGATTACTGCCATGAAGCTCACCGGCC
GTCGTCGTCGCGTCACGGCTCCTTTCTCCGCCGCGTCCCGCGACCGCAAG
CTCGGCGCGCTTACGTCCATCGAAGAACTCTTCCAAGAAGGGGACTCGGG
CGAATACTCCGTCGCCTTCACCATCCGTGTCACGGCCCGCGACGAACGTA
CCGGCAAGATGGCCTTGCTCTTCTCTTCGGGAAAACGAACGAAACGATGG
GTAGAACCATTGGGGGAGGATATGGGGGTGCCTCAAGGCACGCTGTTGGT
AAATCAAGGTTGGTCGCGGGTAACTATCCCATCAACCGATCTAGCTATGC
AGATGCTGACCGTTTTTTATGTGGCGCCGGTGGAAGGCCAGCCGGAGACG
GTTGATCCGGCCGAGCGGCTTTATTCGGTATTGCCGCTTGATTGTGCATT
CATGCTGCAGTGTAAGACAGAGGACCAGGAGCAGATAGGTCGATTCATCC
TGGCTGCCTTGGAGAACGGCCCGAGCTTAGAGTGTGACAGTTGA
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Synonyms
Publications