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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:782678..785274 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02910.1 vs.
Match: EWM30404.1 (hypothetical protein Naga_100026g12 [Nannochloropsis gaditana]) HSP 1 Score: 449.9 bits (1156), Expect = 1.400e-122 Identity = 254/479 (53.03%), Postives = 322/479 (67.22%), Query Frame = 0
Query: 81 SSSYASRRPRLEAHEQVLRLRACEIAAVAGFHPFKDLLELLEEHIYQDLPQLQGEDYAVCDLVLISKEQEFEHLAHQAGPQAAAALRKIHAGSMSATVQTTRDVDQIKMDMGKALRLAAAGGRVAEAGITVLRNHLTHMLSTAFGKRHEDSAIELYESRHGVKVHSQNERMLTWWFPQDPGGVSLETPPPLDIKRLRERREVREGAAAAAKVGGGKEGGGSGLGEGGGAEVEYSVVAVGDQDSSAKVQPSPKAMSSSKSSFLSSSEQHKQHDHHPRSTSRA-TIRGPDAWFRVCGVVDGLTETLDASHDDPNAWQMRTTVVEMKNRVAVRNVRDPPPFHDTLQLVTYMLMVDGANGGGGTTWGDLVQVVRGR--GKGGGEGELEENEDEGEEEDGGGGGFGVSRMTTTRVALDEEQLQHGPLFFAHVVPRLYAYTNFVYSLRHDAGARRKFLLADEEEKWEWVVKHLDFWPRKRPQFNY 557
S+S A R L+ EQVLRLRA EI+A+AG HPFKD+LELL+ HIYQDLP LQ ED A C LVL++KE+EFE L AGP+AA LR++H+ S SA VQTT+DVD+ + D+ L AA GRV +T+LRNH+T+ L+T +GKRHED+ I+ YE+ HGV+VHSQN+ +L W FP+DP VS + PPPL + LR E A A G EG G GE GG++ + V+ G + +P + + + L S Q RA ++RGPDAWFRVCGV+DGLTE LDAS DDP AW++RTTVVE+K+RVA NV+DPPPFHDTLQL+TYMLM+DGA GGGG+TWGDLVQV RG+ G+GG + +DE + TTR+ L QL+HG L+FAHVVPRLYAY++ VY+LR+DA ARR FLL+DE+ KW+ V + L F P RPQFNY
Sbjct: 95 SASSARRLEELKPEEQVLRLRASEISALAGLHPFKDVLELLDRHIYQDLPHLQAEDCASCGLVLMTKEEEFEELVGLAGPEAAL-LRQVHSNSFSAAVQTTQDVDRRRSDITDVLERVAARGRVGAEEVTLLRNHMTYSLATEYGKRHEDAGIKQYEATHGVQVHSQNDTLLAWTFPRDPTAVSWDKPPPLQVTPLRP-----EAMARARGAPGESEGEMPGNGEAGGSDGA-ARVSPGQESPLGTDGCAPLGVPNGRLEALVSVPGVCQ--------GRARSLRGPDAWFRVCGVMDGLTEALDASDDDPAAWRLRTTVVEVKHRVAPANVQDPPPFHDTLQLLTYMLMLDGARGGGGSTWGDLVQVARGQWSGRGGSQSCGPRTDDE-----------EATVTATTRITLKGGQLEHGKLYFAHVVPRLYAYSDLVYALRNDADARRAFLLSDEDAKWDLVYRRLPFLPAFRPQFNY 547
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02910.1 ID=NO02G02910.1|Name=NO02G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2457bp ACAGAAAGGGATGGCATGACCTGAAACTTAAGCTGTCCCTGCACGCAGGT ATCCAATAGGCCCGAGGTCGGCATCTTTCCTCAACGATTCATACGGGTCC CGGGGCCATCATGGATCAGCCATCCGCAGCAGAGGCCGCAGTAGAAAATA CCGTCTCATCAACCACACAGCAGGCGAAAGGCATCTTGGAACATGTACCC CTCTCTGCAGCAGCACCGGACGCATCATCCCTATCTTCCCCGCCTTCGAT GCTTGACCCACGAGAAGACGCAGATCTAGGACATTGCCAATGCCAGTCGC AATTCACATTACTTTCCTCCACTGAAGCAGTATCATCGTCACCCTCAGAT TCCTCCTCATATGCTTCCCGCCGTCCTCGCCTCGAAGCCCACGAGCAAGT CCTGCGGCTCCGGGCCTGTGAAATCGCGGCAGTGGCAGGCTTCCATCCAT TCAAAGACCTACTAGAGCTTTTAGAGGAGCACATCTATCAAGATCTCCCT CAATTACAAGGGGAAGACTATGCGGTGTGTGACCTGGTCCTTATCAGCAA GGAACAAGAGTTCGAGCACCTTGCTCACCAAGCAGGTCCCCAGGCGGCCG CGGCACTACGTAAGATCCATGCGGGAAGCATGTCGGCCACAGTGCAAACC ACAAGGGACGTGGATCAAATTAAGATGGACATGGGAAAAGCTCTGAGACT GGCTGCGGCGGGAGGGAGGGTGGCCGAGGCTGGTATTACTGTGTTGCGGA ATCATTTGACCCACATGTTGTCGACGGCGTTTGGGAAGCGGCATGAGGAT TCGGCGATTGAATTGTATGAGAGCCGGCATGGTGTAAAGGTGCATAGTCA GAATGAGAGGATGTTGACTTGGTGGTTTCCTCAGGACCCAGGTGGCGTGT CATTGGAAACTCCCCCCCCATTAGATATCAAGCGTTTGCGGGAACGGCGG GAAGTGCGCGAAGGAGCAGCCGCAGCAGCAAAAGTAGGAGGAGGAAAAGA AGGAGGAGGATCGGGATTAGGAGAGGGAGGAGGAGCTGAGGTAGAGTATA GCGTTGTGGCTGTGGGGGATCAAGATTCTTCTGCCAAAGTCCAGCCATCA CCGAAAGCAATGTCGTCTTCGAAGTCGTCATTTCTCTCCTCTTCCGAACA GCACAAGCAGCACGATCATCATCCCCGCTCAACCTCCCGCGCGACAATCC GGGGCCCCGATGCTTGGTTTCGTGTGTGTGGAGTGGTGGATGGTCTGACT GAAACCCTGGACGCCAGCCACGACGATCCAAATGCGTGGCAAATGCGGAC AACAGTAGTAGAGATGAAGAACCGTGTGGCCGTGCGGAATGTGCGCGACC CGCCCCCTTTTCACGACACCCTGCAATTGGTGACGTACATGCTAATGGTA GATGGGGCGAATGGAGGGGGAGGGACGACATGGGGGGATTTGGTGCAGGT AGTGCGTGGAAGAGGAAAAGGCGGAGGAGAAGGAGAGTTAGAAGAAAACG AAGACGAAGGAGAAGAAGAAGACGGAGGAGGAGGAGGGTTTGGTGTTTCC AGGATGACGACAACGCGGGTTGCTTTAGACGAAGAGCAGCTGCAACATGG CCCGTTATTTTTCGCGCATGTTGTGCCACGGTTGTATGCCTACACCAATT TTGTGTACTCGTTGCGGCATGATGCGGGTGCCCGACGAAAATTCTTGTTG GCCGATGAAGAAGAGAAGTGGGAATGGGTGGTAAAGCATCTGGACTTCTG GCCTCGGAAGCGGCCACAGTTTAATTACGGCCACAGTGGGGGTGGTGATG ATGGTAGTACCAGTGGACGACTGTGGCAGCAACTGAGGGGAGATAAACGT AGACAGAACAAAAAGAAGACCAAGAAGATGCAGGCCGCACGCGGGGAGAG CAGCAGCAGCGGCCATCTGGGAGTGCTTCATGAGCAGAAGCAGTCGCAAT CACAGCCGCAGAGGAAGAGACAGCGGGCGAATTTGCATGGGCACTACGAA TTGCGAAGCCAACAGAGCATGGTCACGCGAAGCACGAAGCGCAAATCCAA TTCACCGATGCCGGGAGGGGGAGAAAGGGGAGGACGAGGACGAGGGCGAG GACGAGGAGGGGATTCGCTGTTAGTTTGAATGACCCGACGAAGTAATTGT GGGCGGATAAAAGGCATTGATGTGTGGGACGGGGAAGCGAGCCAGAGCAA GGTGGCTCCCAGAAGCAAGGACCTGCATAGAGCAAGACAGGGGACTGTGA GAGCAAATTACTGAATCGCAAAAGATTGGGAACCATGTCGAAGCGGACGG ACGACGTCGTGTTTTCGAAAACGCTGAAGACCGGGGGGGGGAGTGGGGGA GTATGTAGCATATACGCAGACATATCGAAATCAAGAGCATGTAGACTGTA ACTGTTTGTACACTTGCCATGAAAATGCCTCGTAAACTAGAAAGTAGAAA GTTAAGA back to topprotein sequence of NO02G02910.1 >NO02G02910.1-protein ID=NO02G02910.1-protein|Name=NO02G02910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=673bp MDQPSAAEAAVENTVSSTTQQAKGILEHVPLSAAAPDASSLSSPPSMLDP REDADLGHCQCQSQFTLLSSTEAVSSSPSDSSSYASRRPRLEAHEQVLRL RACEIAAVAGFHPFKDLLELLEEHIYQDLPQLQGEDYAVCDLVLISKEQE FEHLAHQAGPQAAAALRKIHAGSMSATVQTTRDVDQIKMDMGKALRLAAA GGRVAEAGITVLRNHLTHMLSTAFGKRHEDSAIELYESRHGVKVHSQNER MLTWWFPQDPGGVSLETPPPLDIKRLRERREVREGAAAAAKVGGGKEGGG SGLGEGGGAEVEYSVVAVGDQDSSAKVQPSPKAMSSSKSSFLSSSEQHKQ HDHHPRSTSRATIRGPDAWFRVCGVVDGLTETLDASHDDPNAWQMRTTVV EMKNRVAVRNVRDPPPFHDTLQLVTYMLMVDGANGGGGTTWGDLVQVVRG RGKGGGEGELEENEDEGEEEDGGGGGFGVSRMTTTRVALDEEQLQHGPLF FAHVVPRLYAYTNFVYSLRHDAGARRKFLLADEEEKWEWVVKHLDFWPRK RPQFNYGHSGGGDDGSTSGRLWQQLRGDKRRQNKKKTKKMQAARGESSSS GHLGVLHEQKQSQSQPQRKRQRANLHGHYELRSQQSMVTRSTKRKSNSPM PGGGERGGRGRGRGRGGDSLLV* back to topmRNA from alignment at chr2:782678..785274+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02910.1 ID=NO02G02910.1|Name=NO02G02910.1|organism=Nannochloropsis oceanica|type=mRNA|length=2597bp|location=Sequence derived from alignment at chr2:782678..785274+ (Nannochloropsis oceanica) ACAGAAAGGGATGGCATGACCTGAAACTTAAGCTGTCCCTGCACGCAGGT
ATCCAATAGGCCCGAGGTCGGCATCTTTCCTCAACGATTCATACGGGTCC
CGGGGCCATCATGGATCAGCCATCCGCAGCAGAGGCCGCAGTAGAAAATA
CCGTCTCATCAACCACACAGCAGGCGAAAGGCATCTTGGAACATGTACCC
CTCTCTGCAGCAGCACCGGACGCATCATCCCTATCTTCCCCGCCTTCGAT
GCTTGACCCACGAGAAGACGCAGATCTAGGACATTGCCAATGCCAGTCGC
AATTCACATTACTTTCCTCCACTGAAGCAGTATCATCGTCACCCTCAGAT
TCCTCCTCATATGCTTCCCGCCGTCCTCGCCTCGAAGCCCACGAGCAAGT
CCTGCGGCTCCGGGCCTGTGAAATCGCGGCAGTGGCAGGCTTCCATCCAT
TCAAAGACCTACTAGAGCTTTTAGAGGAGCACATCTATCAAGATCTCCCT
CAATTACAAGGGGAAGACTATGCGGTGTGTGACCTGGTCCTTATCAGCAA
GGAACAAGAGTTCGAGCACCTTGCTCACCAAGCAGGTCCCCAGGCGGCCG
CGGCACTACGTAAGATCCATGCGGGAAGCATGTCGGCCACAGTGCAAACC
ACAAGGGACGTGGATCAAATTAAGATGGACATGGGAAAAGCTCTGAGACT
GGCTGCGGCGGGAGGGAGGGTGGCCGAGGCTGGTATTACTGTGTTGCGGA
ATCATTTGACCCACATGTTGTCGACGGCGTTTGGGAAGCGGCATGAGGAT
TCGGCGATTGAATTGTATGAGAGCCGGCATGGTGTAAAGGTGCATAGTCA
GAATGAGAGGATGTTGACTTGGTGGTTTCCTCAGGACCCAGGTGGCGTGT
CATTGGAAACTCCCCCCCCATTAGATATCAAGCGTTTGCGGGAACGGCGG
GAAGTGCGCGAAGGAGCAGCCGCAGCAGCAAAAGTAGGAGGAGGAAAAGA
AGGAGGAGGATCGGGATTAGGAGAGGGAGGAGGAGCTGAGGTAGAGTATA
GCGTTGTGGCTGTGGGGGATCAAGATTCTTCTGCCAAAGTCCAGCCATCA
CCGAAAGCAATGTCGTCTTCGAAGTCGTCATTTCTCTCCTCTTCCGAACA
GCACAAGCAGCACGATCATCATCCCCGCTCAACCTCCCGCGCGACAATCC
GGGGCCCCGATGCTTGGTTTCGTGTGTGTGGAGTGGTGGATGGTCTGACT
GAAACCCTGGACGCCAGCCACGACGATCCAAATGCGTGGCAAATGCGGAC
AACAGTAGTAGAGGTACGTGAAATGGATGGCATTTGATTGAATGGTGGTA
TGATCAGAGGCAGGGGACAAATTCACCTTGCTCCATGGGTGATGTAATCC
TCCTTGCTTAACTTCCATCTCACTCACACACATACACACGCATGCACACA
CAGATGAAGAACCGTGTGGCCGTGCGGAATGTGCGCGACCCGCCCCCTTT
TCACGACACCCTGCAATTGGTGACGTACATGCTAATGGTAGATGGGGCGA
ATGGAGGGGGAGGGACGACATGGGGGGATTTGGTGCAGGTAGTGCGTGGA
AGAGGAAAAGGCGGAGGAGAAGGAGAGTTAGAAGAAAACGAAGACGAAGG
AGAAGAAGAAGACGGAGGAGGAGGAGGGTTTGGTGTTTCCAGGATGACGA
CAACGCGGGTTGCTTTAGACGAAGAGCAGCTGCAACATGGCCCGTTATTT
TTCGCGCATGTTGTGCCACGGTTGTATGCCTACACCAATTTTGTGTACTC
GTTGCGGCATGATGCGGGTGCCCGACGAAAATTCTTGTTGGCCGATGAAG
AAGAGAAGTGGGAATGGGTGGTAAAGCATCTGGACTTCTGGCCTCGGAAG
CGGCCACAGTTTAATTACGGCCACAGTGGGGGTGGTGATGATGGTAGTAC
CAGTGGACGACTGTGGCAGCAACTGAGGGGAGATAAACGTAGACAGAACA
AAAAGAAGACCAAGAAGATGCAGGCCGCACGCGGGGAGAGCAGCAGCAGC
GGCCATCTGGGAGTGCTTCATGAGCAGAAGCAGTCGCAATCACAGCCGCA
GAGGAAGAGACAGCGGGCGAATTTGCATGGGCACTACGAATTGCGAAGCC
AACAGAGCATGGTCACGCGAAGCACGAAGCGCAAATCCAATTCACCGATG
CCGGGAGGGGGAGAAAGGGGAGGACGAGGACGAGGGCGAGGACGAGGAGG
GGATTCGCTGTTAGTTTGAATGACCCGACGAAGTAATTGTGGGCGGATAA
AAGGCATTGATGTGTGGGACGGGGAAGCGAGCCAGAGCAAGGTGGCTCCC
AGAAGCAAGGACCTGCATAGAGCAAGACAGGGGACTGTGAGAGCAAATTA
CTGAATCGCAAAAGATTGGGAACCATGTCGAAGCGGACGGACGACGTCGT
GTTTTCGAAAACGCTGAAGACCGGGGGGGGGAGTGGGGGAGTATGTAGCA
TATACGCAGACATATCGAAATCAAGAGCATGTAGACTGTAACTGTTTGTA
CACTTGCCATGAAAATGCCTCGTAAACTAGAAAGTAGAAAGTTAAGA back to topCoding sequence (CDS) from alignment at chr2:782678..785274+ >NO02G02910.1 ID=NO02G02910.1|Name=NO02G02910.1|organism=Nannochloropsis oceanica|type=CDS|length=2019bp|location=Sequence derived from alignment at chr2:782678..785274+ (Nannochloropsis oceanica) ATGGATCAGCCATCCGCAGCAGAGGCCGCAGTAGAAAATACCGTCTCATC AACCACACAGCAGGCGAAAGGCATCTTGGAACATGTACCCCTCTCTGCAG CAGCACCGGACGCATCATCCCTATCTTCCCCGCCTTCGATGCTTGACCCA CGAGAAGACGCAGATCTAGGACATTGCCAATGCCAGTCGCAATTCACATT ACTTTCCTCCACTGAAGCAGTATCATCGTCACCCTCAGATTCCTCCTCAT ATGCTTCCCGCCGTCCTCGCCTCGAAGCCCACGAGCAAGTCCTGCGGCTC CGGGCCTGTGAAATCGCGGCAGTGGCAGGCTTCCATCCATTCAAAGACCT ACTAGAGCTTTTAGAGGAGCACATCTATCAAGATCTCCCTCAATTACAAG GGGAAGACTATGCGGTGTGTGACCTGGTCCTTATCAGCAAGGAACAAGAG TTCGAGCACCTTGCTCACCAAGCAGGTCCCCAGGCGGCCGCGGCACTACG TAAGATCCATGCGGGAAGCATGTCGGCCACAGTGCAAACCACAAGGGACG TGGATCAAATTAAGATGGACATGGGAAAAGCTCTGAGACTGGCTGCGGCG GGAGGGAGGGTGGCCGAGGCTGGTATTACTGTGTTGCGGAATCATTTGAC CCACATGTTGTCGACGGCGTTTGGGAAGCGGCATGAGGATTCGGCGATTG AATTGTATGAGAGCCGGCATGGTGTAAAGGTGCATAGTCAGAATGAGAGG ATGTTGACTTGGTGGTTTCCTCAGGACCCAGGTGGCGTGTCATTGGAAAC TCCCCCCCCATTAGATATCAAGCGTTTGCGGGAACGGCGGGAAGTGCGCG AAGGAGCAGCCGCAGCAGCAAAAGTAGGAGGAGGAAAAGAAGGAGGAGGA TCGGGATTAGGAGAGGGAGGAGGAGCTGAGGTAGAGTATAGCGTTGTGGC TGTGGGGGATCAAGATTCTTCTGCCAAAGTCCAGCCATCACCGAAAGCAA TGTCGTCTTCGAAGTCGTCATTTCTCTCCTCTTCCGAACAGCACAAGCAG CACGATCATCATCCCCGCTCAACCTCCCGCGCGACAATCCGGGGCCCCGA TGCTTGGTTTCGTGTGTGTGGAGTGGTGGATGGTCTGACTGAAACCCTGG ACGCCAGCCACGACGATCCAAATGCGTGGCAAATGCGGACAACAGTAGTA GAGATGAAGAACCGTGTGGCCGTGCGGAATGTGCGCGACCCGCCCCCTTT TCACGACACCCTGCAATTGGTGACGTACATGCTAATGGTAGATGGGGCGA ATGGAGGGGGAGGGACGACATGGGGGGATTTGGTGCAGGTAGTGCGTGGA AGAGGAAAAGGCGGAGGAGAAGGAGAGTTAGAAGAAAACGAAGACGAAGG AGAAGAAGAAGACGGAGGAGGAGGAGGGTTTGGTGTTTCCAGGATGACGA CAACGCGGGTTGCTTTAGACGAAGAGCAGCTGCAACATGGCCCGTTATTT TTCGCGCATGTTGTGCCACGGTTGTATGCCTACACCAATTTTGTGTACTC GTTGCGGCATGATGCGGGTGCCCGACGAAAATTCTTGTTGGCCGATGAAG AAGAGAAGTGGGAATGGGTGGTAAAGCATCTGGACTTCTGGCCTCGGAAG CGGCCACAGTTTAATTACGGCCACAGTGGGGGTGGTGATGATGGTAGTAC CAGTGGACGACTGTGGCAGCAACTGAGGGGAGATAAACGTAGACAGAACA AAAAGAAGACCAAGAAGATGCAGGCCGCACGCGGGGAGAGCAGCAGCAGC GGCCATCTGGGAGTGCTTCATGAGCAGAAGCAGTCGCAATCACAGCCGCA GAGGAAGAGACAGCGGGCGAATTTGCATGGGCACTACGAATTGCGAAGCC AACAGAGCATGGTCACGCGAAGCACGAAGCGCAAATCCAATTCACCGATG CCGGGAGGGGGAGAAAGGGGAGGACGAGGACGAGGGCGAGGACGAGGAGG GGATTCGCTGTTAGTTTGA back to top
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