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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:717251..719188 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02570.1 vs.
Match: EWM30385.1 (uncharacterized protein Naga_100026g46 [Nannochloropsis gaditana]) HSP 1 Score: 579.7 bits (1493), Expect = 8.100e-162 Identity = 289/414 (69.81%), Postives = 339/414 (81.88%), Query Frame = 0
Query: 63 MPSQKSLLRVFLLTTGLSLALGFLVGLPAIPIPSSTRATS-FHRDATVVHAGPTLLPTKSMPGTQPAGLGSKVFLPAFLPPWIARDTVRTQVSEDIFFLEQAQTFVNVSVNIRSTIIRLKNGKLFVHAPVAPTAECISLLKDLGEVAYVVLPVTAVEHKVYMASFVAQFPKAKVYVAPGQFSWPLNLPLGFRVDGILTDENKEMMPFKDEIDYTGWFFRPFTGSISEVAFFHKKTKTLLVTDAVIWIDNAPPEILKQKGIAPNVWKKMALQACFLGPPNLDTFEEIKQKLIVSPVIRILVVSRAKREVRDWIARVCRWNFERIIPAHFSAPIKAGPKDLRDAYSFLEEEEGKEGANVAASPSPAFGFDLSAFNLGGVTGKGRK----RTVVFPEKDTKILDALNKFVSATGLAD 472
MP +K L + + GL A+GF+ P + S+ S + RDAT+ A P LLPTK MP QPAGLGSK +LPAFLPPWIARDTVRT+ S+DIFFLEQ+QTFVNVSVNIRST+IRLKNG LFVHAPVAPT EC+SL+K+LGEVAYVVLPVTA+EHKVYMA F + FPKAK+YVAPGQFSWP++LPLGFRVDG+LT+ENK+ MPF DEIDYTGW FRPFTGSISEVAFFH+K++TLLVTDA+IWID+ PPEIL+Q G+ ++WKKMALQACFLGPPNLDTF++IKQ+LIVSPVIR+LVVSRAK+EV +WI RVC W FER+IPAHFSAPIKAGP DL+DAY+FL EEG+ GA+ P FGFD SA G GRK ++V FPE+D KIL +LNKFVSATGLA+
Sbjct: 1 MPLRKKLGLLLVSACGLHTAVGFMAQNPNKVLLSTMPTVSPYGRDATIAWAAPVLLPTKPMPPVQPAGLGSKFYLPAFLPPWIARDTVRTKFSDDIFFLEQSQTFVNVSVNIRSTVIRLKNGDLFVHAPVAPTPECVSLIKELGEVAYVVLPVTAIEHKVYMARFASLFPKAKIYVAPGQFSWPVDLPLGFRVDGVLTEENKKSMPFIDEIDYTGWIFRPFTGSISEVAFFHRKSRTLLVTDAIIWIDDQPPEILRQAGVGQDLWKKMALQACFLGPPNLDTFQKIKQRLIVSPVIRVLVVSRAKKEVAEWIKRVCEWKFERVIPAHFSAPIKAGPVDLQDAYAFL--EEGETGADRGGKSLP-FGFDFSALWQGRQGAVGRKGRGGKSVQFPEQDLKILKSLNKFVSATGLAE 411
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02570.1 ID=NO02G02570.1|Name=NO02G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1810bp GCCAGGTGAGTAGGGAGCTGCTGTGTATGGTAAAGAATGACTGCGGTGAG GTCTCGTGTTGTGTGTTGTGCTGGGCAAGACAATGCTAGGTATCATCATG CCTTGCTCTCTCCGGCAAACCGCTCGACGAATCAACGTGACTGATCGGCG GACGTGCGCGTCCTCTTGCTTGTGTTCGGACTCACGCAGTAAGTCTTACT CAGCCTCTCCACTACACCACACCACACCCGTATAAGCAGTATGAAAAGGA TAATGACAGCAAGGCGCACTTTGCCTTCCCTGAGGTCGTCCGCCTGTCAT CCTTTTGCCACTAGCCGACTTCACTCCACAGCCGCAGAGGCAGGAGGTCG AGCTGGAACACCATCGTATACGTCATTCCGACACCTCACCCTCTTTCAAC GCACAAACAAACAGGGGTGCAAGATGATGCCATCACAGAAGAGCCTTCTA AGAGTATTCTTGCTTACTACCGGGCTTTCTCTAGCCTTAGGCTTTCTCGT CGGCCTGCCCGCCATCCCCATCCCCTCTTCCACCCGTGCCACCTCATTCC ACCGCGATGCCACTGTTGTGCACGCTGGCCCCACGCTCCTACCCACAAAG TCCATGCCCGGCACACAGCCCGCGGGGTTGGGTTCTAAAGTCTTCCTTCC CGCTTTTCTACCGCCCTGGATTGCGCGTGACACCGTTCGGACACAAGTCT CCGAGGACATATTTTTTCTTGAACAGGCTCAAACATTTGTCAACGTCAGC GTCAACATCCGATCGACCATCATCCGTCTCAAGAACGGCAAGCTCTTCGT GCACGCCCCCGTCGCCCCAACAGCCGAGTGCATTTCCCTCCTCAAAGACT TGGGGGAGGTTGCTTATGTGGTTTTACCCGTCACGGCGGTGGAGCACAAG GTGTACATGGCGAGCTTTGTTGCCCAGTTTCCGAAAGCAAAAGTCTATGT TGCTCCCGGTCAGTTTAGCTGGCCGTTGAATTTACCCCTTGGGTTTCGGG TGGATGGGATTCTGACGGATGAAAATAAGGAAATGATGCCTTTTAAGGAC GAAATTGATTACACTGGCTGGTTCTTCAGGCCCTTCACAGGCTCGATAAG CGAAGTGGCGTTTTTCCATAAGAAGACCAAGACATTGCTCGTCACTGACG CTGTCATTTGGATCGATAATGCCCCCCCAGAGATCCTCAAACAGAAGGGA ATCGCGCCGAATGTGTGGAAAAAGATGGCTTTGCAAGCCTGCTTTCTTGG CCCTCCCAACCTCGATACCTTTGAAGAGATAAAGCAAAAACTGATTGTTT CCCCTGTCATTCGTATTTTGGTCGTATCGCGGGCGAAGAGGGAGGTGAGG GATTGGATTGCCAGAGTGTGTCGGTGGAATTTCGAGAGGATTATCCCTGC TCATTTCTCGGCGCCGATCAAAGCGGGGCCTAAAGACTTGAGGGATGCAT ATTCCTTCTTGGAGGAGGAGGAAGGAAAGGAGGGAGCGAATGTTGCGGCG TCACCATCACCGGCATTTGGGTTTGATTTGTCAGCGTTTAATCTGGGTGG AGTTACGGGGAAGGGGCGGAAGAGGACGGTTGTGTTTCCGGAGAAGGATA CCAAGATTTTGGACGCGCTGAATAAGTTCGTTAGTGCGACGGGCTTAGCC GACTAAGGAAGGGAGAGATTTTTTGTCTTTTTGAAACAGACACACACTTT TATGTATACAAAGATAATGCATATGCGATGGGGGAGAATGATATGTAGAG GGCAGACGCCTGCTTTTTTGAAAAACGCACAAAAAGAATAAACACTGCAC AATTAGGAAC back to topprotein sequence of NO02G02570.1 >NO02G02570.1-protein ID=NO02G02570.1-protein|Name=NO02G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp MKRIMTARRTLPSLRSSACHPFATSRLHSTAAEAGGRAGTPSYTSFRHLT LFQRTNKQGCKMMPSQKSLLRVFLLTTGLSLALGFLVGLPAIPIPSSTRA TSFHRDATVVHAGPTLLPTKSMPGTQPAGLGSKVFLPAFLPPWIARDTVR TQVSEDIFFLEQAQTFVNVSVNIRSTIIRLKNGKLFVHAPVAPTAECISL LKDLGEVAYVVLPVTAVEHKVYMASFVAQFPKAKVYVAPGQFSWPLNLPL GFRVDGILTDENKEMMPFKDEIDYTGWFFRPFTGSISEVAFFHKKTKTLL VTDAVIWIDNAPPEILKQKGIAPNVWKKMALQACFLGPPNLDTFEEIKQK LIVSPVIRILVVSRAKREVRDWIARVCRWNFERIIPAHFSAPIKAGPKDL RDAYSFLEEEEGKEGANVAASPSPAFGFDLSAFNLGGVTGKGRKRTVVFP EKDTKILDALNKFVSATGLAD* back to topmRNA from alignment at chr2:717251..719188- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02570.1 ID=NO02G02570.1|Name=NO02G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1938bp|location=Sequence derived from alignment at chr2:717251..719188- (Nannochloropsis oceanica) GCCAGGTGAGTAGGGAGCTGCTGTGTATGGTAAAGAATGACTGCGGTGAG
GTCTCGTGTTGTGTGTTGTGCTGGGCAAGACAATGCTAGGTATCATCATG
CCTTGCTCTCTCCGGCAAACCGCTCGACGAATCAACGTGACTGATCGGCG
GACGTGCGCGTCCTCTTGCTTGTGTTCGGACTCACGCAGTAAGTCTTACT
CAGCCTCTCCACTACACCACACCACACCCGTATAAGCAGTATGAAAAGGA
TAATGACAGCAAGGCGCACTTTGCCTTCCCTGAGGTCGTCCGCCTGTCAT
CCTTTTGCCACTAGCCGACTTCACTCCACAGCCGCAGAGGCAGGAGGTCG
AGCTGGAACACCATCGTATACGTCATTCCGACACCTCACCCTCTTTCAAC
GCACAAACAAACAGGGGTGCAAGATGATGCCATCACAGAAGAGCCTTCTA
AGAGTATTCTTGCTTACTACCGGGCTTTCTCTAGCCTTAGGCTTTCTCGT
CGGCCTGCCCGCCATCCCCATCCCCTCTTCCACCCGTGCCACCTCATTCC
ACCGCGATGCCACTGTTGTGCACGCTGGCCCCACGCTCCTACCCACAAAG
TCCATGCCCGGCACACAGCCCGCGGGGTTGGGTTCTAAAGTCTTCCTTCC
CGCTTTTCTACCGCCCTGGATTGCGCGTGACACCGTTCGGACACAAGTCT
CCGAGGACATATTTTTTCTTGAACAGGTATGTCCTCACACCCTTTCACTT
CCTCCCCTTCTTCCTCCTCCAGATGGCTTTTTGTCATATCGAATTAAATA
GGAATGGAAATTTTTGAATTCAGTGCATCCCTCCTCCCCTCCTCCCTCCC
CTAGGCTCAAACATTTGTCAACGTCAGCGTCAACATCCGATCGACCATCA
TCCGTCTCAAGAACGGCAAGCTCTTCGTGCACGCCCCCGTCGCCCCAACA
GCCGAGTGCATTTCCCTCCTCAAAGACTTGGGGGAGGTTGCTTATGTGGT
TTTACCCGTCACGGCGGTGGAGCACAAGGTGTACATGGCGAGCTTTGTTG
CCCAGTTTCCGAAAGCAAAAGTCTATGTTGCTCCCGGTCAGTTTAGCTGG
CCGTTGAATTTACCCCTTGGGTTTCGGGTGGATGGGATTCTGACGGATGA
AAATAAGGAAATGATGCCTTTTAAGGACGAAATTGATTACACTGGCTGGT
TCTTCAGGCCCTTCACAGGCTCGATAAGCGAAGTGGCGTTTTTCCATAAG
AAGACCAAGACATTGCTCGTCACTGACGCTGTCATTTGGATCGATAATGC
CCCCCCAGAGATCCTCAAACAGAAGGGAATCGCGCCGAATGTGTGGAAAA
AGATGGCTTTGCAAGCCTGCTTTCTTGGCCCTCCCAACCTCGATACCTTT
GAAGAGATAAAGCAAAAACTGATTGTTTCCCCTGTCATTCGTATTTTGGT
CGTATCGCGGGCGAAGAGGGAGGTGAGGGATTGGATTGCCAGAGTGTGTC
GGTGGAATTTCGAGAGGATTATCCCTGCTCATTTCTCGGCGCCGATCAAA
GCGGGGCCTAAAGACTTGAGGGATGCATATTCCTTCTTGGAGGAGGAGGA
AGGAAAGGAGGGAGCGAATGTTGCGGCGTCACCATCACCGGCATTTGGGT
TTGATTTGTCAGCGTTTAATCTGGGTGGAGTTACGGGGAAGGGGCGGAAG
AGGACGGTTGTGTTTCCGGAGAAGGATACCAAGATTTTGGACGCGCTGAA
TAAGTTCGTTAGTGCGACGGGCTTAGCCGACTAAGGAAGGGAGAGATTTT
TTGTCTTTTTGAAACAGACACACACTTTTATGTATACAAAGATAATGCAT
ATGCGATGGGGGAGAATGATATGTAGAGGGCAGACGCCTGCTTTTTTGAA
AAACGCACAAAAAGAATAAACACTGCACAATTAGGAAC back to topCoding sequence (CDS) from alignment at chr2:717251..719188- >NO02G02570.1 ID=NO02G02570.1|Name=NO02G02570.1|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at chr2:717251..719188- (Nannochloropsis oceanica) ATGAAAAGGATAATGACAGCAAGGCGCACTTTGCCTTCCCTGAGGTCGTC CGCCTGTCATCCTTTTGCCACTAGCCGACTTCACTCCACAGCCGCAGAGG CAGGAGGTCGAGCTGGAACACCATCGTATACGTCATTCCGACACCTCACC CTCTTTCAACGCACAAACAAACAGGGGTGCAAGATGATGCCATCACAGAA GAGCCTTCTAAGAGTATTCTTGCTTACTACCGGGCTTTCTCTAGCCTTAG GCTTTCTCGTCGGCCTGCCCGCCATCCCCATCCCCTCTTCCACCCGTGCC ACCTCATTCCACCGCGATGCCACTGTTGTGCACGCTGGCCCCACGCTCCT ACCCACAAAGTCCATGCCCGGCACACAGCCCGCGGGGTTGGGTTCTAAAG TCTTCCTTCCCGCTTTTCTACCGCCCTGGATTGCGCGTGACACCGTTCGG ACACAAGTCTCCGAGGACATATTTTTTCTTGAACAGGCTCAAACATTTGT CAACGTCAGCGTCAACATCCGATCGACCATCATCCGTCTCAAGAACGGCA AGCTCTTCGTGCACGCCCCCGTCGCCCCAACAGCCGAGTGCATTTCCCTC CTCAAAGACTTGGGGGAGGTTGCTTATGTGGTTTTACCCGTCACGGCGGT GGAGCACAAGGTGTACATGGCGAGCTTTGTTGCCCAGTTTCCGAAAGCAA AAGTCTATGTTGCTCCCGGTCAGTTTAGCTGGCCGTTGAATTTACCCCTT GGGTTTCGGGTGGATGGGATTCTGACGGATGAAAATAAGGAAATGATGCC TTTTAAGGACGAAATTGATTACACTGGCTGGTTCTTCAGGCCCTTCACAG GCTCGATAAGCGAAGTGGCGTTTTTCCATAAGAAGACCAAGACATTGCTC GTCACTGACGCTGTCATTTGGATCGATAATGCCCCCCCAGAGATCCTCAA ACAGAAGGGAATCGCGCCGAATGTGTGGAAAAAGATGGCTTTGCAAGCCT GCTTTCTTGGCCCTCCCAACCTCGATACCTTTGAAGAGATAAAGCAAAAA CTGATTGTTTCCCCTGTCATTCGTATTTTGGTCGTATCGCGGGCGAAGAG GGAGGTGAGGGATTGGATTGCCAGAGTGTGTCGGTGGAATTTCGAGAGGA TTATCCCTGCTCATTTCTCGGCGCCGATCAAAGCGGGGCCTAAAGACTTG AGGGATGCATATTCCTTCTTGGAGGAGGAGGAAGGAAAGGAGGGAGCGAA TGTTGCGGCGTCACCATCACCGGCATTTGGGTTTGATTTGTCAGCGTTTA ATCTGGGTGGAGTTACGGGGAAGGGGCGGAAGAGGACGGTTGTGTTTCCG GAGAAGGATACCAAGATTTTGGACGCGCTGAATAAGTTCGTTAGTGCGAC GGGCTTAGCCGACTAA back to top
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