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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:636876..638696 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G02260.1 vs.
Match: XP_008604983.1 (hypothetical protein SDRG_01244 [Saprolegnia diclina VS20]; EQC41269.1 hypothetical protein SDRG_01244 [Saprolegnia diclina VS20]) HSP 1 Score: 236.1 bits (601), Expect = 2.700e-58 Identity = 140/384 (36.46%), Postives = 205/384 (53.39%), Query Frame = 0
Query: 47 RAVVMQDAELLTGFDIQVLGSAAKMPTIRSSCPCIGVRVGARQMLFDCGEGTQRQFIHSILIPSKVQGIFITHMHGDHIFGLPGMLLSFLSLLNTTTNNAPPPSSPSSSSHAQWADIPKSRTLRVYGPVGLYNYVCMTLNLCEAKVGVNLSDGRPVIVVHELVGGEQFGGGGGGNGRDRRAAFVKRDSDFAMPGVVSRAIRPDADGFWTIPPFDDEVGGSSTVTPHSRKQNFVVRAGQVKHTVPTFGYIVQEDDKPGKVDVAQVRALGLSPGPAYKDLTEGRDVVLPDGKGVIRAREVVGPRRRGRKLAVLGDTCDPFSMSSLVRDADVLFHEATLENEMQGMAIARGHSTPSMAAMFAKHVRARRLVLTHFSNRYTSSSGEGR 431
R+ + E TGF++ LG+ A P+I + + +++ LFDCGEG+Q+Q S + + ++ IF+TH+HGDHI+GLPG++ + SL + +P + L +YGP G++ ++ LN+ A N+++ R I VHELV A +KR+ + I PD G + P D+ N+ VRAG ++HTVP FGY+V+E +PG ++ A +A GL PGP YK L EGR V LPDG ++ +V+ P RGRK A+LGD+ D +M+ L R+ADVL HE+TL + M A+ RGHST SMA FA+ A LVLTHFS+R++ S R
Sbjct: 22 RSSATPETEPFTGFELVFLGTGAGAPSIERNASGLVLQLHGAAWLFDCGEGSQKQMFQSNVRATAIERIFLTHLHGDHIYGLPGLVCTLNSLCGPDIDRE--------------TKLPTPKVLSIYGPRGVFAFLNTALNVSRA----NMTNIR--IAVHELVPLCD-------------ARTIKRERGPIHECLQHHLIHPDTSGDTPVWPILDDA-------------NYRVRAGFLQHTVPCFGYVVEEQTRPGHINAALAKARGLPPGPLYKQLKEGRAVPLPDGS-LLEPTDVMTPPIRGRKAAILGDSSDSLAMTELARNADVLVHESTLPHSMLAQAVPRGHSTSSMAGAFARLSNATLLVLTHFSSRFSYSRASAR 358
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G02260.1 ID=NO02G02260.1|Name=NO02G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp ACAGGTGCAACCTGATGAGAATAATGAACGCCGTGGGGGGCCAAATGGTG GCGCGACGGACTGTCAGTGGCTTTAGGAGACGCCTCTATTTCTTTCCCCC TGCCTCCTCCTCTGCCTCCACCCCTTCCTTCCACTCCTCCCACATGGCAC GACGAGCTGTCGTCATGCAAGACGCCGAGCTCTTGACAGGCTTTGATATT CAAGTCCTGGGCTCTGCGGCCAAGATGCCCACGATCCGCAGCAGCTGTCC GTGCATTGGTGTACGGGTTGGAGCCAGGCAAATGCTTTTTGACTGCGGGG AGGGCACACAACGCCAATTCATCCACTCCATCCTCATTCCCAGCAAGGTC CAAGGTATTTTCATCACTCACATGCACGGTGATCATATCTTTGGGCTTCC TGGGATGCTGCTCAGCTTTCTGAGCCTCCTCAACACCACAACAAACAACG CCCCTCCGCCCTCATCCCCTTCCTCGTCCTCGCACGCCCAATGGGCAGAT ATACCGAAATCTCGGACCTTGCGCGTTTACGGGCCTGTGGGTCTGTATAA TTACGTGTGTATGACTCTGAATCTTTGTGAGGCGAAAGTAGGCGTAAACT TGTCAGATGGACGACCAGTGATAGTGGTGCATGAGTTGGTTGGTGGGGAG CAATTTGGAGGAGGGGGTGGGGGTAACGGGAGGGATCGACGCGCGGCATT TGTTAAAAGGGATTCGGATTTTGCGATGCCCGGGGTAGTAAGTCGTGCAA TAAGACCTGATGCGGATGGGTTTTGGACGATTCCACCCTTTGACGACGAG GTCGGCGGTAGCAGTACTGTGACACCGCACAGTCGGAAACAGAATTTCGT CGTCCGTGCAGGACAAGTTAAGCATACAGTGCCTACCTTTGGTTATATCG TGCAGGAGGACGATAAACCAGGGAAAGTGGACGTGGCACAAGTAAGAGCC CTCGGGTTGAGTCCAGGGCCGGCATACAAGGATTTAACGGAGGGGAGGGA TGTGGTCTTGCCTGATGGGAAGGGAGTGATCAGGGCGAGGGAGGTTGTGG GTCCACGGAGAAGGGGTAGGAAATTAGCGGTGCTTGGAGATACGTGTGAT CCATTTTCGATGAGTTCTTTAGTGAGGGACGCTGACGTCCTTTTTCACGA GGCGACGCTTGAGAATGAGATGCAGGGCATGGCGATAGCAAGAGGCCACT CGACCCCCTCGATGGCGGCTATGTTTGCGAAGCATGTGAGGGCACGACGG TTGGTGTTGACACATTTCAGCAATCGATACACGTCGTCGAGTGGCGAAGG GAGGGAAGAGGGAGGGATTGAGGGGGGAATTGGAGGAGGAGGAGGAGGAG GAGGGGCGACGTATGGGCCGGGGAAGGAGCAGCAATTTCAAGCGAGGCCC CGGGGTGCCGTTGCACGGTTGTTACAGCAGGCGGTGGAGGCGCTGGGGGA TGAGAGGCGAGTTCTGGTGGCGGAGGACTTTTTGAAGATTCATGTTCCGC CTGAAGGATTTCATATGTTGCCTCTTCCTGCTGCTGCCGCTGCTGCTGCT GCTGCTAGCACAGCTACAAATGCTACAGAATCGACTGCTGCTGCTGCTGC CGCTGGTGGTGGGGGTGAAGGTTTTGGTGTTGTTGTTGCTGGTGGTGATG GAGCAAGGAGTAGGGTTCGGAGAAAGGAGGATATAGAACAGATGAGGGAG GAGGAAGCATGTCCGTCATGAACACGTCAGTGTACAGTTTCTCAAACAAA TGAACGAAAGTAATTGCATACATAAATAAATACGTACCTGAAAGAAAAAG AAATCAAAATGTAATAAAAAG back to topprotein sequence of NO02G02260.1 >NO02G02260.1-protein ID=NO02G02260.1-protein|Name=NO02G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp MRIMNAVGGQMVARRTVSGFRRRLYFFPPASSSASTPSFHSSHMARRAVV MQDAELLTGFDIQVLGSAAKMPTIRSSCPCIGVRVGARQMLFDCGEGTQR QFIHSILIPSKVQGIFITHMHGDHIFGLPGMLLSFLSLLNTTTNNAPPPS SPSSSSHAQWADIPKSRTLRVYGPVGLYNYVCMTLNLCEAKVGVNLSDGR PVIVVHELVGGEQFGGGGGGNGRDRRAAFVKRDSDFAMPGVVSRAIRPDA DGFWTIPPFDDEVGGSSTVTPHSRKQNFVVRAGQVKHTVPTFGYIVQEDD KPGKVDVAQVRALGLSPGPAYKDLTEGRDVVLPDGKGVIRAREVVGPRRR GRKLAVLGDTCDPFSMSSLVRDADVLFHEATLENEMQGMAIARGHSTPSM AAMFAKHVRARRLVLTHFSNRYTSSSGEGREEGGIEGGIGGGGGGGGATY GPGKEQQFQARPRGAVARLLQQAVEALGDERRVLVAEDFLKIHVPPEGFH MLPLPAAAAAAAAASTATNATESTAAAAAAGGGGEGFGVVVAGGDGARSR VRRKEDIEQMREEEACPS* back to topmRNA from alignment at chr2:636876..638696+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G02260.1 ID=NO02G02260.1|Name=NO02G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp|location=Sequence derived from alignment at chr2:636876..638696+ (Nannochloropsis oceanica) ACAGGTGCAACCTGATGAGAATAATGAACGCCGTGGGGGGCCAAATGGTG
GCGCGACGGACTGTCAGTGGCTTTAGGAGACGCCTCTATTTCTTTCCCCC
TGCCTCCTCCTCTGCCTCCACCCCTTCCTTCCACTCCTCCCACATGGCAC
GACGAGCTGTCGTCATGCAAGACGCCGAGCTCTTGACAGGCTTTGATATT
CAAGTCCTGGGCTCTGCGGCCAAGATGCCCACGATCCGCAGCAGCTGTCC
GTGCATTGGTGTACGGGTTGGAGCCAGGCAAATGCTTTTTGACTGCGGGG
AGGGCACACAACGCCAATTCATCCACTCCATCCTCATTCCCAGCAAGGTC
CAAGGTATTTTCATCACTCACATGCACGGTGATCATATCTTTGGGCTTCC
TGGGATGCTGCTCAGCTTTCTGAGCCTCCTCAACACCACAACAAACAACG
CCCCTCCGCCCTCATCCCCTTCCTCGTCCTCGCACGCCCAATGGGCAGAT
ATACCGAAATCTCGGACCTTGCGCGTTTACGGGCCTGTGGGTCTGTATAA
TTACGTGTGTATGACTCTGAATCTTTGTGAGGCGAAAGTAGGCGTAAACT
TGTCAGATGGACGACCAGTGATAGTGGTGCATGAGTTGGTTGGTGGGGAG
CAATTTGGAGGAGGGGGTGGGGGTAACGGGAGGGATCGACGCGCGGCATT
TGTTAAAAGGGATTCGGATTTTGCGATGCCCGGGGTAGTAAGTCGTGCAA
TAAGACCTGATGCGGATGGGTTTTGGACGATTCCACCCTTTGACGACGAG
GTCGGCGGTAGCAGTACTGTGACACCGCACAGTCGGAAACAGAATTTCGT
CGTCCGTGCAGGACAAGTTAAGCATACAGTGCCTACCTTTGGTTATATCG
TGCAGGAGGACGATAAACCAGGGAAAGTGGACGTGGCACAAGTAAGAGCC
CTCGGGTTGAGTCCAGGGCCGGCATACAAGGATTTAACGGAGGGGAGGGA
TGTGGTCTTGCCTGATGGGAAGGGAGTGATCAGGGCGAGGGAGGTTGTGG
GTCCACGGAGAAGGGGTAGGAAATTAGCGGTGCTTGGAGATACGTGTGAT
CCATTTTCGATGAGTTCTTTAGTGAGGGACGCTGACGTCCTTTTTCACGA
GGCGACGCTTGAGAATGAGATGCAGGGCATGGCGATAGCAAGAGGCCACT
CGACCCCCTCGATGGCGGCTATGTTTGCGAAGCATGTGAGGGCACGACGG
TTGGTGTTGACACATTTCAGCAATCGATACACGTCGTCGAGTGGCGAAGG
GAGGGAAGAGGGAGGGATTGAGGGGGGAATTGGAGGAGGAGGAGGAGGAG
GAGGGGCGACGTATGGGCCGGGGAAGGAGCAGCAATTTCAAGCGAGGCCC
CGGGGTGCCGTTGCACGGTTGTTACAGCAGGCGGTGGAGGCGCTGGGGGA
TGAGAGGCGAGTTCTGGTGGCGGAGGACTTTTTGAAGATTCATGTTCCGC
CTGAAGGATTTCATATGTTGCCTCTTCCTGCTGCTGCCGCTGCTGCTGCT
GCTGCTAGCACAGCTACAAATGCTACAGAATCGACTGCTGCTGCTGCTGC
CGCTGGTGGTGGGGGTGAAGGTTTTGGTGTTGTTGTTGCTGGTGGTGATG
GAGCAAGGAGTAGGGTTCGGAGAAAGGAGGATATAGAACAGATGAGGGAG
GAGGAAGCATGTCCGTCATGAACACGTCAGTGTACAGTTTCTCAAACAAA
TGAACGAAAGTAATTGCATACATAAATAAATACGTACCTGAAAGAAAAAG
AAATCAAAATGTAATAAAAAG back to topCoding sequence (CDS) from alignment at chr2:636876..638696+ >NO02G02260.1 ID=NO02G02260.1|Name=NO02G02260.1|organism=Nannochloropsis oceanica|type=CDS|length=1707bp|location=Sequence derived from alignment at chr2:636876..638696+ (Nannochloropsis oceanica) ATGAGAATAATGAACGCCGTGGGGGGCCAAATGGTGGCGCGACGGACTGT CAGTGGCTTTAGGAGACGCCTCTATTTCTTTCCCCCTGCCTCCTCCTCTG CCTCCACCCCTTCCTTCCACTCCTCCCACATGGCACGACGAGCTGTCGTC ATGCAAGACGCCGAGCTCTTGACAGGCTTTGATATTCAAGTCCTGGGCTC TGCGGCCAAGATGCCCACGATCCGCAGCAGCTGTCCGTGCATTGGTGTAC GGGTTGGAGCCAGGCAAATGCTTTTTGACTGCGGGGAGGGCACACAACGC CAATTCATCCACTCCATCCTCATTCCCAGCAAGGTCCAAGGTATTTTCAT CACTCACATGCACGGTGATCATATCTTTGGGCTTCCTGGGATGCTGCTCA GCTTTCTGAGCCTCCTCAACACCACAACAAACAACGCCCCTCCGCCCTCA TCCCCTTCCTCGTCCTCGCACGCCCAATGGGCAGATATACCGAAATCTCG GACCTTGCGCGTTTACGGGCCTGTGGGTCTGTATAATTACGTGTGTATGA CTCTGAATCTTTGTGAGGCGAAAGTAGGCGTAAACTTGTCAGATGGACGA CCAGTGATAGTGGTGCATGAGTTGGTTGGTGGGGAGCAATTTGGAGGAGG GGGTGGGGGTAACGGGAGGGATCGACGCGCGGCATTTGTTAAAAGGGATT CGGATTTTGCGATGCCCGGGGTAGTAAGTCGTGCAATAAGACCTGATGCG GATGGGTTTTGGACGATTCCACCCTTTGACGACGAGGTCGGCGGTAGCAG TACTGTGACACCGCACAGTCGGAAACAGAATTTCGTCGTCCGTGCAGGAC AAGTTAAGCATACAGTGCCTACCTTTGGTTATATCGTGCAGGAGGACGAT AAACCAGGGAAAGTGGACGTGGCACAAGTAAGAGCCCTCGGGTTGAGTCC AGGGCCGGCATACAAGGATTTAACGGAGGGGAGGGATGTGGTCTTGCCTG ATGGGAAGGGAGTGATCAGGGCGAGGGAGGTTGTGGGTCCACGGAGAAGG GGTAGGAAATTAGCGGTGCTTGGAGATACGTGTGATCCATTTTCGATGAG TTCTTTAGTGAGGGACGCTGACGTCCTTTTTCACGAGGCGACGCTTGAGA ATGAGATGCAGGGCATGGCGATAGCAAGAGGCCACTCGACCCCCTCGATG GCGGCTATGTTTGCGAAGCATGTGAGGGCACGACGGTTGGTGTTGACACA TTTCAGCAATCGATACACGTCGTCGAGTGGCGAAGGGAGGGAAGAGGGAG GGATTGAGGGGGGAATTGGAGGAGGAGGAGGAGGAGGAGGGGCGACGTAT GGGCCGGGGAAGGAGCAGCAATTTCAAGCGAGGCCCCGGGGTGCCGTTGC ACGGTTGTTACAGCAGGCGGTGGAGGCGCTGGGGGATGAGAGGCGAGTTC TGGTGGCGGAGGACTTTTTGAAGATTCATGTTCCGCCTGAAGGATTTCAT ATGTTGCCTCTTCCTGCTGCTGCCGCTGCTGCTGCTGCTGCTAGCACAGC TACAAATGCTACAGAATCGACTGCTGCTGCTGCTGCCGCTGGTGGTGGGG GTGAAGGTTTTGGTGTTGTTGTTGCTGGTGGTGATGGAGCAAGGAGTAGG GTTCGGAGAAAGGAGGATATAGAACAGATGAGGGAGGAGGAAGCATGTCC GTCATGA back to top
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