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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:487949..491503 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G01660.1 vs.
Match: EWM30544.1 (dTDP-glucose 4,6-dehydratase [Nannochloropsis gaditana]) HSP 1 Score: 634.0 bits (1634), Expect = 3.800e-178 Identity = 317/421 (75.30%), Postives = 346/421 (82.19%), Query Frame = 0
Query: 96 DTIAGSGSELQHTPKNILVTGGAGFIGSHVAILLAHKYPKYKIVVLDKLDYCASLDNLSEVNRRRNFKFVKGNICSSDLVNFVLEEEEIDTVLHLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIKRFVHCSTDEVYGEGTADQEPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLLQRARPLTLHGNGLNTRNFLYVTDVAKAFDCVLHYGETGKIYNIGGTHEKTNVDVAKDLIRKMELL---PSAADNVKAYPSAGDESAAQEKREGL----------------DTSVSSAVAAAAWDLPKDDDDSAYGPYLTFVEDRPFNDLRYSINSEALRRLGWREEVSWEDGLAETIQWYIHKAQNRWGNIESALVPHPKGPLPDDAA 498
D++ G Q+TPKNILVTGGAGFIGSHVAILLAH+YPKYKIVVLDKLDYCASL+NL++V RRRNFKFVKGNICSSDLVNFVLEEEEIDT++HLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGI+RFVH STDEVYGEG A QEPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLL R R LTLHGNGLNTRNFLYVTDVA+A+D VLH+GETGKIYNIGGTHE N++VAKD+IRKM LL + A G + + GL D S++ VAAA ++D+AY LTFVEDRPFNDLRYSINSEALRRLGWREEV+WEDGLA TI WY +AQ+RWGNIE+ALV HP+GP PDD A
Sbjct: 7 DSLNGIMPSCQYTPKNILVTGGAGFIGSHVAILLAHRYPKYKIVVLDKLDYCASLENLADVTRRRNFKFVKGNICSSDLVNFVLEEEEIDTIVHLAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHGIRRFVHVSTDEVYGEGAAGQEPMFEDNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFINLLLRGRRLTLHGNGLNTRNFLYVTDVARAYDVVLHFGETGKIYNIGGTHEMANLEVAKDVIRKMGLLSGREAGAQGADVDGVVGTNAVVDRSQVGLEKDQEKASIGKDVGQGDASITPGVAAAG----NIEEDAAYARLLTFVEDRPFNDLRYSINSEALRRLGWREEVAWEDGLARTIDWYRQQAQDRWGNIEAALVAHPQGPSPDDGA 423
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G01660.1 ID=NO02G01660.1|Name=NO02G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=3047bp GGAACAGGGGGATGAGGAGGAAGAGGAGGGGAAAGATGAAGAGGAGGAAG GTGCAACGGATGAACGAGGGGCTATGGGCATTGATGAGGTGATGATGGTT GGAGACGATGGTCGTGGACAGAGAGGTGTCGCGTCATGAGGTGGGGGCGT GGGCAGGCTGCGTTCTGATGGTGCTGTCGTCACCGTCGTCGTTGTCGTCT CCAGGTTGGCTGTCACGGTTGTCGCCACCTCTGATGCAACCTCTGGCACG TGGGGAGTAGAAAGCCTCTCGTCACTTGAAGGGCTGCCATTGATATCCGG TAACACTGTCAGCAGAGATAGCTTGAAGTCGTCTGGAGTAACCACCACGC CTCCCTCCTGCCTCAATTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC TCCTTATCCTCTGCTATACCTCCCGTTTCCGACCCTGCCTTCGCGTCTCC GATTGCTTCAGCTTCGCTGCCCATCACGAGGGGTAGAAGTGCGAGGGAGG GCTGGCGCGTTGAGGTGGTGGCTGTACTCGACATCATGGCAGCACACAAG GCTTCTATCCACTCAGTTCGTCCCTCAGGGGGCTCCGCCCGCAAAACGTA AGTCCGGTCCTTGGCTGGTACCCACAATTCGAACACGCCATTATCGTCCT CGTGAATGCCAACGCTGCAGATCGGCTCCAAGGCCAGGGAATCGTTCGGC TTTTTGGGTTTTGTTTTCTTCTTGATCGAGTTAGATGACAAGGTGTGAGG CTGGGTAGTATACCAGCTTAAGCGCGCCTCCCCGCCCTCCAAGACGAAAT AGCGGCGATGCCACATAAGCTGCCGGGTAAAGAGGTGGCGGCGCGTGGTT TGCTTGACAAGCCAACCCTCCTTGAGGGGCGCGGTGGGGGTGGTAGGGGT TGCTTGCATGGTCGGAGGCGCGAGCCGCGATCTGGTAGAGGCCAGGAAGC GGAGGAGGCAGACTATAAAAGGCGCAGATCCTGCCTGTCGTCGGCGTGAA TGATTTGGGCGTGTGTTGGGCTGTGTTGTGCTGCGATGCGGTCTGTCGAT ATGAGGCCGCCAAAAAAGGGGCGATTTTTGGCGAGACGGGGGGCTGCTTT CTTCTTCTTTAAAAAAAAGTCCCCTCTTGTGCGCAAGCACAATGTCTGGC GTGAATGGATAAGTGAAGTGATCAGAAATGTGGTAGTGCCACAGTAGGTA AAAAGAAAGTCGTCCTCGTGAGGAGGGAAAAGTCCCAACATCATGAAAAT TGAACTGTAACTATAGCTTCCAAGTTCTGAGTTACAACCCCACACAGGCC TCACCAAATGCAGGCCAAGCTCGGCCACCATTTTCGTCACACCGCCCTGC ATGTTGGCAGAGATCTTTGATGATGGTTCTGGGTTTGTGGAGACCCTTCA CACCTTTATATGGGGCAAGGGAGACGTGCAGCTACGCATGGGCCAAGCAT CGACGCGTCTACGAGGACCTACGCGAACCACACATCGCGTTTTAAGACGG GATCACAAAGCAAGTGGCCTGTCACTATCCATCAACTTACCTGTTCCCCT TTGTCCTCCCCCCTATCCACCCGCACAACCCCTCAACCGAACAGGCATCC GTCCCCCTTCTTCCCCCTTGACAATGAACGGCATGGACACCATCGCGGGT AGCGGCAGCGAGCTCCAGCATACGCCCAAAAACATCCTGGTCACCGGGGG CGCGGGTTTCATCGGCTCACACGTGGCCATCTTGCTCGCGCACAAGTATC CCAAGTACAAGATCGTGGTGCTAGACAAGTTGGATTATTGCGCGTCTTTG GACAACTTGTCTGAGGTCAACCGCCGCAGAAATTTCAAATTTGTCAAGGG AAATATATGTTCCTCCGACCTCGTCAATTTTGTGCTCGAGGAAGAGGAGA TCGACACGGTCCTCCACTTGGCGGCGCAGACACATGTCGATAATAGCTTC GGGAACAGCTTCTCGTTTACCCAGAATAATATTTTAGGAACCCATGTTTT GCTCGAGAGCGCGAAGGTCCACGGCATCAAGCGCTTTGTTCATTGCTCGA CAGATGAGGTTTATGGTGAGGGTACCGCGGACCAAGAGCCCATGTTTGAG GACAATGTGCTTGAGCCGACCAACCCCTACGCCGCTACCAAAGCTGGTGC CGAGTTTTTGGCTAAATCATACCACCGCTCCTTCAACCTGCCCGTCATCA TCACGCGTGGTAATAACGTCTACGGCCCACACCAGTACCCCGAGAAGCTC ATCCCGAAGTTTATCAATTTGCTCCAGCGGGCGCGGCCATTGACGCTGCA CGGCAACGGCCTCAACACGCGAAATTTTCTGTACGTGACCGATGTGGCAA AAGCTTTCGATTGCGTTTTACACTATGGCGAGACTGGCAAAATCTACAAC ATTGGTGGCACGCACGAGAAGACGAATGTGGATGTGGCCAAGGATTTAAT AAGAAAGATGGAACTTCTGCCCTCGGCTGCTGACAATGTGAAGGCCTACC CGAGCGCTGGTGACGAGAGCGCAGCTCAGGAGAAGAGGGAGGGGCTGGAC ACTTCGGTCTCTTCTGCTGTTGCCGCCGCCGCTTGGGACCTCCCCAAGGA CGATGATGATTCGGCTTACGGGCCCTATCTTACCTTTGTAGAAGATCGAC CCTTCAATGACTTGCGCTATTCTATCAACAGTGAGGCTCTGCGGCGCTTA GGCTGGCGCGAGGAGGTATCTTGGGAGGATGGACTCGCTGAGACTATCCA GTGGTATATTCACAAGGCACAAAATCGTTGGGGCAATATCGAATCGGCCT TGGTCCCGCATCCAAAAGGTCCTCTGCCGGACGACGCGGCTTAAGCGGTC TCACATGAATAATTGTTTGTAGGTGAGAGGGCATGGTCGATGTGATTTGT TAGCAGTTGTCGGGTGAAATTGGGAATTATTTTTGTGAGAAGGAAAGTGC CAAGGAGAAGGGCCGACGTTTGCACAAAGACGAAAATCAGCTCTGGTAGG CAAGAAAGACGGAAGAAATAAAGAATTAGCAGGGAGATTTGGGAAAT back to topprotein sequence of NO02G01660.1 >NO02G01660.1-protein ID=NO02G01660.1-protein|Name=NO02G01660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp MLAEIFDDGSGFVETLHTFIWGKGDVQLRMGQASTRLRGPTRTTHRVLRR DHKASGLSLSINLPVPLCPPPYPPAQPLNRTGIRPPSSPLTMNGMDTIAG SGSELQHTPKNILVTGGAGFIGSHVAILLAHKYPKYKIVVLDKLDYCASL DNLSEVNRRRNFKFVKGNICSSDLVNFVLEEEEIDTVLHLAAQTHVDNSF GNSFSFTQNNILGTHVLLESAKVHGIKRFVHCSTDEVYGEGTADQEPMFE DNVLEPTNPYAATKAGAEFLAKSYHRSFNLPVIITRGNNVYGPHQYPEKL IPKFINLLQRARPLTLHGNGLNTRNFLYVTDVAKAFDCVLHYGETGKIYN IGGTHEKTNVDVAKDLIRKMELLPSAADNVKAYPSAGDESAAQEKREGLD TSVSSAVAAAAWDLPKDDDDSAYGPYLTFVEDRPFNDLRYSINSEALRRL GWREEVSWEDGLAETIQWYIHKAQNRWGNIESALVPHPKGPLPDDAA* back to topmRNA from alignment at chr2:487949..491503+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G01660.1 ID=NO02G01660.1|Name=NO02G01660.1|organism=Nannochloropsis oceanica|type=mRNA|length=3555bp|location=Sequence derived from alignment at chr2:487949..491503+ (Nannochloropsis oceanica) GGAACAGGGGGATGAGGAGGAAGAGGAGGGGAAAGATGAAGAGGAGGAAG
GTGCAACGGATGAACGAGGGGCTATGGGCATTGATGAGGTGATGATGGTT
GGAGACGATGGTCGTGGACAGAGAGGTGTCGCGTCATGAGGTGGGGGCGT
GGGCAGGCTGCGTTCTGATGGTGCTGTCGTCACCGTCGTCGTTGTCGTCT
CCAGGTTGGCTGTCACGGTTGTCGCCACCTCTGATGCAACCTCTGGCACG
TGGGGAGTAGAAAGCCTCTCGTCACTTGAAGGGCTGCCATTGATATCCGG
TAACACTGTCAGCAGAGATAGCTTGAAGTCGTCTGGAGTAACCACCACGC
CTCCCTCCTGCCTCAATTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTTATCCTCTGCTATACCTCCCGTTTCCGACCCTGCCTTCGCGTCTCC
GATTGCTTCAGCTTCGCTGCCCATCACGAGGGGTAGAAGTGCGAGGGAGG
GCTGGCGCGTTGAGGTGGTGGCTGTACTCGACATCATGGCAGCACACAAG
GCTTCTATCCACTCAGTTCGTCCCTCAGGGGGCTCCGCCCGCAAAACGTA
AGTCCGGTCCTTGGCTGGTACCCACAATTCGAACACGCCATTATCGTCCT
CGTGAATGCCAACGCTGCAGATCGGCTCCAAGGCCAGGGAATCGTTCGGC
TTTTTGGGTTTTGTTTTCTTCTTGATCGAGTTAGATGACAAGGTGTGAGG
CTGGGTAGTATACCAGCTTAAGCGCGCCTCCCCGCCCTCCAAGACGAAAT
AGCGGCGATGCCACATAAGCTGCCGGGTAAAGAGGTGGCGGCGCGTGGTT
TGCTTGACAAGCCAACCCTCCTTGAGGGGCGCGGTGGGGGTGGTAGGGGT
TGCTTGCATGGTCGGAGGCGCGAGCCGCGATCTGGTAGAGGCCAGGAAGC
GGAGGAGGCAGACTATAAAAGGCGCAGATCCTGCCTGTCGTCGGCGTGAA
TGATTTGGGCGTGTGTTGGGCTGTGTTGTGCTGCGATGCGGTCTGTCGAT
ATGAGGCCGCCAAAAAAGGGGCGATTTTTGGCGAGACGGGGGGCTGCTTT
CTTCTTCTTTAAAAAAAAGTCCCCTCTTGTGCGCAAGCACAATGTCTGGC
GTGAATGGATAAGTGAAGTGATCAGAAATGTGGTAGTGCCACAGTAGGTA
AAAAGAAAGTCGTCCTCGTGAGGAGGGAAAAGTCCCAACATCATGAAAAT
TGAACTGTAACTATAGCTTCCAAGTTCTGAGTTACAACCCCACACAGGCC
TCACCAAATGCAGGCCAAGCTCGGCCACCATTTTCGTCACACCGCCCTGC
ATGTTGGCAGAGATCTTTGATGATGGTTCTGGGTTTGTGGAGACCCTTCA
CACCTTTATATGGGGCAAGGGAGACGTGCAGCTACGCATGGGCCAAGCAT
CGACGCGTCTACGAGGACCTACGCGAACCACACATCGCGTTTTAAGACGG
GATCACAAAGCAAGTGGCCTGTCACTATCCATCAACTTACCTGTTCCCCT
TTGTCCTCCCCCCTATCCACCCGCACAACCCCTCAACCGAACAGGCATCC
GTCCCCCTTCTTCCCCCTTGACAATGAACGGCATGGACACCATCGCGGGT
AGCGGCAGCGAGCTCCAGCATACGCCCAAAAACATCCTGGTCACCGGGGG
CGCGGGTTTCATGTACGGTTGGGTGGATATGCGGGGCAAGGGGCTGACGA
CACATTACAGCAGCTAATGGATGTCCCTCCTTCTTTCTCTCCTTCCCCCA
AACACCGTAGCGGCTCACACGTGGCCATCTTGCTCGCGCACAAGTATCCC
AAGTACAAGATCGTGGTGCTAGACAAGTTGGATTGTAAGTCTTGTAGGTT
TTTACGGCGTAGGGTTCTGCAGTCGCTTCCTTTGTGTCAAAAGCGTTGTG
GGTGTAGAGCGAGGAGAGACTATGCTAGGGGCACACGTCGACAAAGTTGC
CATGCGGTATCCCAGGCATTTACGCACACACCGCTTCAAAAGCCTCACAC
TATGCAATTCAACTTTCTCCTTCCCAACCTCTTCCACAAACAATTAGATT
GCGCGTCTTTGGACAACTTGTCTGAGGTCAACCGCCGCAGAAATTTCAAA
TTTGTCAAGGGAAATATATGTTCCTCCGACCTCGTCAATTTTGTGCTCGA
GGAAGAGGAGATCGACACGGTCCTCCACTTGGCGGCGCAGACACATGTCG
ATAATAGCTTCGGGAACAGCTTCTCGTTTACCCAGAATAATATTTTAGGA
ACCCATGTTTTGCTCGAGAGCGCGAAGGTCCACGGCATCAAGCGCTTTGT
TCATTGCTCGACAGATGAGGTTTATGGTGAGGGTACCGCGGACCAAGAGC
CCATGTTTGAGGACAATGTGCTTGAGGTAGGAAAGAATCTTTTGGGAAAG
CATTGTGGGAAGAGAAGGAGATGTAAGCCGGGGATCGTATGCTTTGAGGG
AGGGTGTCTTCGATATATATACATAGGGTTAGTGTGTGTGTGAGTATGTA
TGTATGTTTGTCTGTGTGGGTGTGTCCCCTTTTACACATTCAAACCATTC
GTCTCATTTGTATTACAACACAGCCGACCAACCCCTACGCCGCTACCAAA
GCTGGTGCCGAGTTTTTGGCTAAATCATACCACCGCTCCTTCAACCTGCC
CGTCATCATCACGCGTGGTAATAACGTCTACGGCCCACACCAGTACCCCG
AGAAGCTCATCCCGAAGTTTATCAATTTGCTCCAGCGGGCGCGGCCATTG
ACGCTGCACGGCAACGGCCTCAACACGCGAAATTTTCTGTACGTGACCGA
TGTGGCAAAAGCTTTCGATTGCGTTTTACACTATGGCGAGACTGGCAAAA
TCTACAACATTGGTGGCACGCACGAGAAGACGAATGTGGATGTGGCCAAG
GATTTAATAAGAAAGATGGAACTTCTGCCCTCGGCTGCTGACAATGTGAA
GGCCTACCCGAGCGCTGGTGACGAGAGCGCAGCTCAGGAGAAGAGGGAGG
GGCTGGACACTTCGGTCTCTTCTGCTGTTGCCGCCGCCGCTTGGGACCTC
CCCAAGGACGATGATGATTCGGCTTACGGGCCCTATCTTACCTTTGTAGA
AGATCGACCCTTCAATGACTTGCGCTATTCTATCAACAGTGAGGCTCTGC
GGCGCTTAGGCTGGCGCGAGGAGGTATCTTGGGAGGATGGACTCGCTGAG
ACTATCCAGTGGTATATTCACAAGGCACAAAATCGTTGGGGCAATATCGA
ATCGGCCTTGGTCCCGCATCCAAAAGGTCCTCTGCCGGACGACGCGGCTT
AAGCGGTCTCACATGAATAATTGTTTGTAGGTGAGAGGGCATGGTCGATG
TGATTTGTTAGCAGTTGTCGGGTGAAATTGGGAATTATTTTTGTGAGAAG
GAAAGTGCCAAGGAGAAGGGCCGACGTTTGCACAAAGACGAAAATCAGCT
CTGGTAGGCAAGAAAGACGGAAGAAATAAAGAATTAGCAGGGAGATTTGG
GAAAT back to topCoding sequence (CDS) from alignment at chr2:487949..491503+ >NO02G01660.1 ID=NO02G01660.1|Name=NO02G01660.1|organism=Nannochloropsis oceanica|type=CDS|length=1494bp|location=Sequence derived from alignment at chr2:487949..491503+ (Nannochloropsis oceanica) ATGTTGGCAGAGATCTTTGATGATGGTTCTGGGTTTGTGGAGACCCTTCA CACCTTTATATGGGGCAAGGGAGACGTGCAGCTACGCATGGGCCAAGCAT CGACGCGTCTACGAGGACCTACGCGAACCACACATCGCGTTTTAAGACGG GATCACAAAGCAAGTGGCCTGTCACTATCCATCAACTTACCTGTTCCCCT TTGTCCTCCCCCCTATCCACCCGCACAACCCCTCAACCGAACAGGCATCC GTCCCCCTTCTTCCCCCTTGACAATGAACGGCATGGACACCATCGCGGGT AGCGGCAGCGAGCTCCAGCATACGCCCAAAAACATCCTGGTCACCGGGGG CGCGGGTTTCATCGGCTCACACGTGGCCATCTTGCTCGCGCACAAGTATC CCAAGTACAAGATCGTGGTGCTAGACAAGTTGGATTATTGCGCGTCTTTG GACAACTTGTCTGAGGTCAACCGCCGCAGAAATTTCAAATTTGTCAAGGG AAATATATGTTCCTCCGACCTCGTCAATTTTGTGCTCGAGGAAGAGGAGA TCGACACGGTCCTCCACTTGGCGGCGCAGACACATGTCGATAATAGCTTC GGGAACAGCTTCTCGTTTACCCAGAATAATATTTTAGGAACCCATGTTTT GCTCGAGAGCGCGAAGGTCCACGGCATCAAGCGCTTTGTTCATTGCTCGA CAGATGAGGTTTATGGTGAGGGTACCGCGGACCAAGAGCCCATGTTTGAG GACAATGTGCTTGAGCCGACCAACCCCTACGCCGCTACCAAAGCTGGTGC CGAGTTTTTGGCTAAATCATACCACCGCTCCTTCAACCTGCCCGTCATCA TCACGCGTGGTAATAACGTCTACGGCCCACACCAGTACCCCGAGAAGCTC ATCCCGAAGTTTATCAATTTGCTCCAGCGGGCGCGGCCATTGACGCTGCA CGGCAACGGCCTCAACACGCGAAATTTTCTGTACGTGACCGATGTGGCAA AAGCTTTCGATTGCGTTTTACACTATGGCGAGACTGGCAAAATCTACAAC ATTGGTGGCACGCACGAGAAGACGAATGTGGATGTGGCCAAGGATTTAAT AAGAAAGATGGAACTTCTGCCCTCGGCTGCTGACAATGTGAAGGCCTACC CGAGCGCTGGTGACGAGAGCGCAGCTCAGGAGAAGAGGGAGGGGCTGGAC ACTTCGGTCTCTTCTGCTGTTGCCGCCGCCGCTTGGGACCTCCCCAAGGA CGATGATGATTCGGCTTACGGGCCCTATCTTACCTTTGTAGAAGATCGAC CCTTCAATGACTTGCGCTATTCTATCAACAGTGAGGCTCTGCGGCGCTTA GGCTGGCGCGAGGAGGTATCTTGGGAGGATGGACTCGCTGAGACTATCCA GTGGTATATTCACAAGGCACAAAATCGTTGGGGCAATATCGAATCGGCCT TGGTCCCGCATCCAAAAGGTCCTCTGCCGGACGACGCGGCTTAA back to top
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