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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:243246..245311 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00730.1 vs.
Match: EWM30552.1 (glycerol-3-phosphate transporter [Nannochloropsis gaditana]) HSP 1 Score: 688.3 bits (1775), Expect = 2.100e-194 Identity = 406/645 (62.95%), Postives = 463/645 (71.78%), Query Frame = 0
Query: 1 MPFYARKRPPPGSVAASDGAPREGFSRQQVLLLLGLYMGYSSMMFSRAAMDVAIPLILQDEATGIGPRDIGTLLTLCSFFYLFGKISMGYSVDHVGPRFVFLGLASFASAGLTCLISFSTTASRMTILMCMLCVAQSSGWAAMTSMVSLWLQPSQYAMAFGILSTSSRMGDLASKVVLGQAVAQDWTWRSLFMVAAALQLSVAFLNLALMPKHPS-----------------DSTEREGRRIVELKSQRLHRGESFGIAHGAGFL---EEAGPLLDTSSSSSPSPSAG--SMSLTHIWAIARTPRFTSMAVAIAALHIVMEFDKYIPLYLHRSLDLSPGLAAQGAALYPLSQLVALGIAGIGYDRLSPRGRLYTITGLCLAVAWFYGLQLLLLLASSSPMVAHQNIYFTLIFLAGFSVAVPYYLPPSIYLAEVGGKGKCGTLSGVLDASGGLTSMGFHYGVGHLVSGGRWGVLLGVLSVCSMLGCLAMATFHSLSLGGRSGRWSQQQEQPQQQQLKNKKDLFMLGEDRSASALLPGRVTPSYSFRSSSSSIGSSISSSISNSGAGASHDY-HQQQQQKKMGGPSPASALSRLPLIGGVV----RLGWSLVGELVGGKSGGGIIVDRKRDRKDSNEGGYEKHLLPV 619
MPFY RK PPGS+AAS G S QQ+ LLLGLY GY SMMFSRAAMDVAIPLILQDEATGI PRDIGTLLTLCSFFYLFGKISMGYSVD VGPR VFLGLASFASAGLTCLISFS TA+RMT LMC LCVAQSSGWAA+TSM+SLWLQPSQYAMAFGILSTSSRMGDLASKV LG+AVA W WRSLF++AAALQL VAFLNL L+PK S S E ++ S + R + G HGAG++ EE LLDTS+SS P + S SL+ IWAIARTPRF SMA+AIAALHIVMEFDKYIPLYLHRSL LSPGLAAQGAALYPLSQL+ALG+AG+ YDRL PRGRL T+ LCL VA F+ LQ+LLLL S+ ++ QNI+ LIF AGF VAVPYYLPPSIYLAEVGGKGKCGTLSGVLDASGG+TSMGFHYGVG+LV+ RWG+LLGV+SVC+++G AM TFH +SL R +Q+ K DL + L R T SY R+ + I + S + GASH Y HQ Q + GP AS LSRLPLIG ++ + W + E GK G +++RK++RKDSN+G Y+KHL V
Sbjct: 118 MPFYVRKHVPPGSIAASGGFFEGSLSHQQIRLLLGLYAGYCSMMFSRAAMDVAIPLILQDEATGIDPRDIGTLLTLCSFFYLFGKISMGYSVDQVGPRLVFLGLASFASAGLTCLISFSHTAARMTFLMCALCVAQSSGWAAITSMISLWLQPSQYAMAFGILSTSSRMGDLASKVALGRAVASGWDWRSLFILAAALQLFVAFLNLFLLPKATSIASFASAAPSMSFLSTTSSLIAEDKKQTLCASPQQRRPSTLGF-HGAGYIPDREEQLVLLDTSASSPPRSLSTYVSASLSQIWAIARTPRFRSMALAIAALHIVMEFDKYIPLYLHRSLGLSPGLAAQGAALYPLSQLLALGLAGVAYDRLKPRGRLLTVGALCLGVAGFFALQVLLLLTPSA-LLPRQNIFLLLIFCAGFCVAVPYYLPPSIYLAEVGGKGKCGTLSGVLDASGGVTSMGFHYGVGYLVARDRWGLLLGVVSVCALVGFRAMTTFHEVSLALDGSRAPRQK----------KNDLL----PETLPTLPTARTTTSYMSRT------NKIGGNESKANVGASHLYNHQPPLQYPLKGPIQASVLSRLPLIGHLIPRARGMSWMSMKE---GKPAVGAMMNRKKERKDSNDGNYQKHLAAV 737
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00730.1 ID=NO02G00730.1|Name=NO02G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2066bp CACATTCTCTACTTCACCCACCCTCACGCGTGCATACCCTTTCCCACCCT CACATCGGCAGCCATGCCCTTCTACGCCCGGAAGCGGCCTCCACCGGGAA GCGTCGCTGCCAGTGACGGGGCGCCACGGGAAGGCTTTTCGCGACAGCAA GTCCTCCTGTTGCTCGGCTTGTACATGGGCTACAGCTCCATGATGTTTTC CAGGGCCGCCATGGACGTCGCAATCCCTCTGATCCTCCAAGACGAGGCAA CAGGCATTGGGCCACGGGATATTGGCACGCTTTTGACCCTTTGCTCCTTT TTCTACCTCTTCGGCAAGATAAGCATGGGGTACAGTGTTGATCATGTGGG GCCGCGCTTCGTCTTCCTAGGGCTGGCTTCCTTTGCCTCGGCAGGATTAA CATGTCTTATCTCATTTAGCACGACCGCATCGCGAATGACAATTTTAATG TGCATGTTGTGCGTTGCCCAGTCCTCGGGGTGGGCAGCCATGACCAGCAT GGTCTCTCTCTGGCTCCAACCGTCCCAATACGCAATGGCTTTTGGAATCC TCTCCACTTCCTCCCGCATGGGAGACCTCGCCTCCAAAGTTGTGCTTGGC CAGGCTGTCGCACAGGACTGGACTTGGCGATCCTTGTTCATGGTGGCAGC AGCCCTGCAGTTGAGTGTGGCTTTTCTCAATCTTGCCCTGATGCCCAAGC ACCCCTCCGACTCTACAGAAAGAGAGGGACGACGCATCGTGGAGCTTAAA TCGCAACGGCTACACCGAGGGGAGAGCTTCGGCATTGCCCATGGCGCGGG CTTTCTGGAAGAGGCTGGACCTTTACTTGATACGTCTTCATCTTCCTCGC CGTCTCCCTCGGCCGGCAGTATGTCCCTCACCCACATCTGGGCTATTGCC CGCACACCCCGATTTACATCCATGGCCGTTGCTATCGCCGCCCTTCACAT CGTCATGGAATTCGACAAATATATCCCTCTCTATCTTCACCGCTCGCTCG ACCTCTCCCCTGGCCTTGCCGCCCAGGGTGCTGCTCTCTACCCTCTTTCT CAGCTGGTCGCACTAGGCATTGCCGGCATTGGCTACGACCGCCTCAGTCC ACGTGGACGCCTCTATACCATCACTGGCCTCTGCCTGGCCGTTGCCTGGT TCTATGGCCTACAACTCCTTCTCCTTCTTGCCTCATCCTCCCCCATGGTC GCACATCAAAATATCTACTTCACCCTTATTTTCCTTGCGGGCTTCTCGGT TGCCGTCCCTTATTACCTCCCTCCTTCCATCTATCTTGCCGAGGTGGGAG GAAAAGGGAAATGCGGGACACTGTCGGGGGTTCTGGATGCGAGTGGTGGG CTTACCTCAATGGGTTTTCATTATGGCGTCGGGCATTTGGTGAGTGGAGG TAGGTGGGGTGTACTGTTGGGGGTGCTCTCCGTCTGCTCAATGCTAGGCT GTTTGGCCATGGCGACGTTCCATTCTTTGTCTTTAGGCGGGAGGAGTGGG CGGTGGAGCCAGCAGCAGGAACAGCCGCAGCAGCAGCAGCTGAAAAATAA AAAGGACTTATTCATGTTGGGGGAAGATAGATCGGCTTCGGCCCTCCTTC CTGGGCGTGTCACTCCTTCTTATAGCTTTCGTAGCAGTAGTAGCAGCATT GGCAGTAGTATTAGCAGCAGTATCAGCAACAGTGGTGCTGGTGCCAGTCA TGATTACCACCAGCAGCAACAGCAAAAGAAGATGGGGGGTCCATCGCCGG CGAGCGCATTGTCGCGACTTCCTCTTATTGGAGGAGTGGTACGCTTAGGG TGGTCTCTAGTAGGGGAACTTGTAGGGGGGAAGTCGGGAGGGGGAATAAT TGTAGACAGAAAGAGGGATAGGAAGGACAGTAATGAGGGGGGGTACGAGA AACACCTTTTGCCTGTCTGATAATCGTGTTGGGTAATGCATCGTGAATAC GATGCACCAGTATGTATTCACGTGTGTGTATTAAATCAATCAAATATAGC AAAATATCAAGAATGTGTTTAGCTAGTTGACATCCACGAGAAAGAATCAT AGCTTCTTCCAGAAGA back to topprotein sequence of NO02G00730.1 >NO02G00730.1-protein ID=NO02G00730.1-protein|Name=NO02G00730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=619bp MPFYARKRPPPGSVAASDGAPREGFSRQQVLLLLGLYMGYSSMMFSRAAM DVAIPLILQDEATGIGPRDIGTLLTLCSFFYLFGKISMGYSVDHVGPRFV FLGLASFASAGLTCLISFSTTASRMTILMCMLCVAQSSGWAAMTSMVSLW LQPSQYAMAFGILSTSSRMGDLASKVVLGQAVAQDWTWRSLFMVAAALQL SVAFLNLALMPKHPSDSTEREGRRIVELKSQRLHRGESFGIAHGAGFLEE AGPLLDTSSSSSPSPSAGSMSLTHIWAIARTPRFTSMAVAIAALHIVMEF DKYIPLYLHRSLDLSPGLAAQGAALYPLSQLVALGIAGIGYDRLSPRGRL YTITGLCLAVAWFYGLQLLLLLASSSPMVAHQNIYFTLIFLAGFSVAVPY YLPPSIYLAEVGGKGKCGTLSGVLDASGGLTSMGFHYGVGHLVSGGRWGV LLGVLSVCSMLGCLAMATFHSLSLGGRSGRWSQQQEQPQQQQLKNKKDLF MLGEDRSASALLPGRVTPSYSFRSSSSSIGSSISSSISNSGAGASHDYHQ QQQQKKMGGPSPASALSRLPLIGGVVRLGWSLVGELVGGKSGGGIIVDRK RDRKDSNEGGYEKHLLPV* back to topmRNA from alignment at chr2:243246..245311- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00730.1 ID=NO02G00730.1|Name=NO02G00730.1|organism=Nannochloropsis oceanica|type=mRNA|length=2066bp|location=Sequence derived from alignment at chr2:243246..245311- (Nannochloropsis oceanica) CACATTCTCTACTTCACCCACCCTCACGCGTGCATACCCTTTCCCACCCT
CACATCGGCAGCCATGCCCTTCTACGCCCGGAAGCGGCCTCCACCGGGAA
GCGTCGCTGCCAGTGACGGGGCGCCACGGGAAGGCTTTTCGCGACAGCAA
GTCCTCCTGTTGCTCGGCTTGTACATGGGCTACAGCTCCATGATGTTTTC
CAGGGCCGCCATGGACGTCGCAATCCCTCTGATCCTCCAAGACGAGGCAA
CAGGCATTGGGCCACGGGATATTGGCACGCTTTTGACCCTTTGCTCCTTT
TTCTACCTCTTCGGCAAGATAAGCATGGGGTACAGTGTTGATCATGTGGG
GCCGCGCTTCGTCTTCCTAGGGCTGGCTTCCTTTGCCTCGGCAGGATTAA
CATGTCTTATCTCATTTAGCACGACCGCATCGCGAATGACAATTTTAATG
TGCATGTTGTGCGTTGCCCAGTCCTCGGGGTGGGCAGCCATGACCAGCAT
GGTCTCTCTCTGGCTCCAACCGTCCCAATACGCAATGGCTTTTGGAATCC
TCTCCACTTCCTCCCGCATGGGAGACCTCGCCTCCAAAGTTGTGCTTGGC
CAGGCTGTCGCACAGGACTGGACTTGGCGATCCTTGTTCATGGTGGCAGC
AGCCCTGCAGTTGAGTGTGGCTTTTCTCAATCTTGCCCTGATGCCCAAGC
ACCCCTCCGACTCTACAGAAAGAGAGGGACGACGCATCGTGGAGCTTAAA
TCGCAACGGCTACACCGAGGGGAGAGCTTCGGCATTGCCCATGGCGCGGG
CTTTCTGGAAGAGGCTGGACCTTTACTTGATACGTCTTCATCTTCCTCGC
CGTCTCCCTCGGCCGGCAGTATGTCCCTCACCCACATCTGGGCTATTGCC
CGCACACCCCGATTTACATCCATGGCCGTTGCTATCGCCGCCCTTCACAT
CGTCATGGAATTCGACAAATATATCCCTCTCTATCTTCACCGCTCGCTCG
ACCTCTCCCCTGGCCTTGCCGCCCAGGGTGCTGCTCTCTACCCTCTTTCT
CAGCTGGTCGCACTAGGCATTGCCGGCATTGGCTACGACCGCCTCAGTCC
ACGTGGACGCCTCTATACCATCACTGGCCTCTGCCTGGCCGTTGCCTGGT
TCTATGGCCTACAACTCCTTCTCCTTCTTGCCTCATCCTCCCCCATGGTC
GCACATCAAAATATCTACTTCACCCTTATTTTCCTTGCGGGCTTCTCGGT
TGCCGTCCCTTATTACCTCCCTCCTTCCATCTATCTTGCCGAGGTGGGAG
GAAAAGGGAAATGCGGGACACTGTCGGGGGTTCTGGATGCGAGTGGTGGG
CTTACCTCAATGGGTTTTCATTATGGCGTCGGGCATTTGGTGAGTGGAGG
TAGGTGGGGTGTACTGTTGGGGGTGCTCTCCGTCTGCTCAATGCTAGGCT
GTTTGGCCATGGCGACGTTCCATTCTTTGTCTTTAGGCGGGAGGAGTGGG
CGGTGGAGCCAGCAGCAGGAACAGCCGCAGCAGCAGCAGCTGAAAAATAA
AAAGGACTTATTCATGTTGGGGGAAGATAGATCGGCTTCGGCCCTCCTTC
CTGGGCGTGTCACTCCTTCTTATAGCTTTCGTAGCAGTAGTAGCAGCATT
GGCAGTAGTATTAGCAGCAGTATCAGCAACAGTGGTGCTGGTGCCAGTCA
TGATTACCACCAGCAGCAACAGCAAAAGAAGATGGGGGGTCCATCGCCGG
CGAGCGCATTGTCGCGACTTCCTCTTATTGGAGGAGTGGTACGCTTAGGG
TGGTCTCTAGTAGGGGAACTTGTAGGGGGGAAGTCGGGAGGGGGAATAAT
TGTAGACAGAAAGAGGGATAGGAAGGACAGTAATGAGGGGGGGTACGAGA
AACACCTTTTGCCTGTCTGATAATCGTGTTGGGTAATGCATCGTGAATAC
GATGCACCAGTATGTATTCACGTGTGTGTATTAAATCAATCAAATATAGC
AAAATATCAAGAATGTGTTTAGCTAGTTGACATCCACGAGAAAGAATCAT
AGCTTCTTCCAGAAGA back to topCoding sequence (CDS) from alignment at chr2:243246..245311- >NO02G00730.1 ID=NO02G00730.1|Name=NO02G00730.1|organism=Nannochloropsis oceanica|type=CDS|length=1857bp|location=Sequence derived from alignment at chr2:243246..245311- (Nannochloropsis oceanica) ATGCCCTTCTACGCCCGGAAGCGGCCTCCACCGGGAAGCGTCGCTGCCAG TGACGGGGCGCCACGGGAAGGCTTTTCGCGACAGCAAGTCCTCCTGTTGC TCGGCTTGTACATGGGCTACAGCTCCATGATGTTTTCCAGGGCCGCCATG GACGTCGCAATCCCTCTGATCCTCCAAGACGAGGCAACAGGCATTGGGCC ACGGGATATTGGCACGCTTTTGACCCTTTGCTCCTTTTTCTACCTCTTCG GCAAGATAAGCATGGGGTACAGTGTTGATCATGTGGGGCCGCGCTTCGTC TTCCTAGGGCTGGCTTCCTTTGCCTCGGCAGGATTAACATGTCTTATCTC ATTTAGCACGACCGCATCGCGAATGACAATTTTAATGTGCATGTTGTGCG TTGCCCAGTCCTCGGGGTGGGCAGCCATGACCAGCATGGTCTCTCTCTGG CTCCAACCGTCCCAATACGCAATGGCTTTTGGAATCCTCTCCACTTCCTC CCGCATGGGAGACCTCGCCTCCAAAGTTGTGCTTGGCCAGGCTGTCGCAC AGGACTGGACTTGGCGATCCTTGTTCATGGTGGCAGCAGCCCTGCAGTTG AGTGTGGCTTTTCTCAATCTTGCCCTGATGCCCAAGCACCCCTCCGACTC TACAGAAAGAGAGGGACGACGCATCGTGGAGCTTAAATCGCAACGGCTAC ACCGAGGGGAGAGCTTCGGCATTGCCCATGGCGCGGGCTTTCTGGAAGAG GCTGGACCTTTACTTGATACGTCTTCATCTTCCTCGCCGTCTCCCTCGGC CGGCAGTATGTCCCTCACCCACATCTGGGCTATTGCCCGCACACCCCGAT TTACATCCATGGCCGTTGCTATCGCCGCCCTTCACATCGTCATGGAATTC GACAAATATATCCCTCTCTATCTTCACCGCTCGCTCGACCTCTCCCCTGG CCTTGCCGCCCAGGGTGCTGCTCTCTACCCTCTTTCTCAGCTGGTCGCAC TAGGCATTGCCGGCATTGGCTACGACCGCCTCAGTCCACGTGGACGCCTC TATACCATCACTGGCCTCTGCCTGGCCGTTGCCTGGTTCTATGGCCTACA ACTCCTTCTCCTTCTTGCCTCATCCTCCCCCATGGTCGCACATCAAAATA TCTACTTCACCCTTATTTTCCTTGCGGGCTTCTCGGTTGCCGTCCCTTAT TACCTCCCTCCTTCCATCTATCTTGCCGAGGTGGGAGGAAAAGGGAAATG CGGGACACTGTCGGGGGTTCTGGATGCGAGTGGTGGGCTTACCTCAATGG GTTTTCATTATGGCGTCGGGCATTTGGTGAGTGGAGGTAGGTGGGGTGTA CTGTTGGGGGTGCTCTCCGTCTGCTCAATGCTAGGCTGTTTGGCCATGGC GACGTTCCATTCTTTGTCTTTAGGCGGGAGGAGTGGGCGGTGGAGCCAGC AGCAGGAACAGCCGCAGCAGCAGCAGCTGAAAAATAAAAAGGACTTATTC ATGTTGGGGGAAGATAGATCGGCTTCGGCCCTCCTTCCTGGGCGTGTCAC TCCTTCTTATAGCTTTCGTAGCAGTAGTAGCAGCATTGGCAGTAGTATTA GCAGCAGTATCAGCAACAGTGGTGCTGGTGCCAGTCATGATTACCACCAG CAGCAACAGCAAAAGAAGATGGGGGGTCCATCGCCGGCGAGCGCATTGTC GCGACTTCCTCTTATTGGAGGAGTGGTACGCTTAGGGTGGTCTCTAGTAG GGGAACTTGTAGGGGGGAAGTCGGGAGGGGGAATAATTGTAGACAGAAAG AGGGATAGGAAGGACAGTAATGAGGGGGGGTACGAGAAACACCTTTTGCC TGTCTGA back to top
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