NO02G00560.1, NO02G00560.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO02G00560.1
Unique Name	NO02G00560.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2179
Alignment location	chr2:193667..196422 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr2	genome	chr2:193667..196422 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO02G00560.1 vs.
Match: EWM30610.1 (thymidylate synthase [Nannochloropsis gaditana])

HSP 1 Score: 292.4 bits (747), Expect = 1.700e-75
Identity = 145/184 (78.80%), Postives = 168/184 (91.30%), Query Frame = 0

Query:  117 PSLFSQVIKKSRFLTHAVSATSFAEAQDFLKRVSDLKATHNCWGWRGRGEERSSDDGEPGGTAGRPILSAIESEELVDVVVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETVTHIPKVLVRLIAPLAMSGAVFQTISRVEKVGEDYTAEEVMVDVKVEASQVEGLRQQLQDATKGAGRLEE 301
            P+ + ++IKKSRFL+ A  A+SFAEAQ FL+ V DLKA+HNCW WRG GEERSSDDGEPGGTAGRPILSAIESE+LVDV+VVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAET+THIPKVLVRL APL+MSGAVFQTI+R +K+ EDYTAEE++VDVKV+A+ ++ LRQQLQDAT+G+G LEE
Sbjct:   84 PAEYEEIIKKSRFLSRATPASSFAEAQTFLRDVGDLKASHNCWAWRGHGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAETLTHIPKVLVRLRAPLSMSGAVFQTINRTDKIKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRGSGSLEE 267

The following BLAST results are available for this feature:

BLAST of NO02G00560.1 vs.

BLAST of NO02G00560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM30610.1	1.700e-75	78.80	thymidylate synthase [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO02G00560	NO02G00560	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO02G00560.1	NO02G00560.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO02G00560.1.cds1	NO02G00560.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00560.1.cds2	NO02G00560.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00560.1.cds3	NO02G00560.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00560.1.cds4	NO02G00560.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO02G00560.1.cds5	NO02G00560.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr2:193667..196422-
coding sequence from alignment at chr2:193667..196422-

mRNA sequence

>NO02G00560.1 ID=NO02G00560.1|Name=NO02G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2179bp
TGTAGACATGGTATCTGTGTGCTTTTCTTAGATGCATAGACGCATTCGGA
GTATACTGCCTGTGCTGCGGCGCACATGAACGGCAATACAATGCGGTGCC
TGTAACATCTACTACTTGTGGGGATGTAACCAATTTCCATTCCATCATCT
ATTCGTTATAAATAAACATGCTTCCCTTCGCTCTTACTGTTGCTGCCGCT
GCTGCCGCTGCTGCTGCTACTGCTGCTACTGCTATGGTTTATATCTCCTC
TCCTCCATCTCATTTCCCTTCTCCTTCATCTCCTCTTTGATTTTTCTCTC
TTGTTGTCGTTTGGCGGCCGCCCACACGCTATAGCGATGCATGACGATGC
TCCCTGCAACTGCCACATTTAACGACGCGGTGCCCTGCGAAAGGAGCAGG
GAGAGAAGGAGGAAGGGAAGGAGAGAGGTGAGATAAAAGCAAGAGGGAGA
TTGGAGAAAAGTAAACACGTACCTGGCCATACTGGCTTATATACATGAAT
CCATCGCAAACCCTTGCCTGCCTTGAAGACATGCCCGTTCCCTCATTCCC
GAGCAGTAACGCCACTCCTCCTCCTCCTCCTCCTCCGCCCCCTTTGTCCC
ATGGGGCCTCCTCCACATTTACCGCCGTCTCTCCAATCTCTATTCCCCAA
ACTTGTATATTTTGAGCATGCAAGTAATCACGGCATTCCTCCAATGTCCC
GTCAAAGCGTCGATATAGAGGCGTGGGAGGATGCGGTGGCTCTGCCTCTC
CCTCCACAGCAGCAAAGGCAGTCGCGAGTCGCTTCGGGACGTGGGAGAGT
TCGTCAAAGCCCGGCTGACCTACAACCAGGACCTCGGCTCCAAAGGCAGC
CGCGGAGGTAAGGAGTGTACGGACATTCTGACGCTTGGAGATGTGGTGTA
GAAGAAGGAAGAGGCGTGGCGATGGTGGAGACATTGACTCGGATGAGATG
GGGTGGGTTTCGCCATTTACGACGACAGGCTCCATTTCCGTACCGCGTAG
GCGATGGGACGATAGCAATGACTGTCGTGTGTTTATAGTAGTAGTGGTTT
CAGGTTGTTTAAGACTGGTAATTGAGGGTTAGTTTTGCAACCTCCCCACT
AACACAAATACGCCCCACACGCGCAAACAACACAGACGAGCCGAGTACCA
TGACCATCGCCACAACTACAATAACAGTAAGATCAAAAAGCTGAAGGGGG
GAGCGCTCTTTATTTCGCGGGCGCTAGCCATGCCCGGCAGCCTCCTGCCA
AGACGCCCTCCCTCAACGATCGTCGTCCTGCTACTATTTTTAATTCTGCA
AGTGATGCTTGCAGCCGCCCGCCGTAGCTGCGCTAGCTATCGACCCGTCT
CGGTCACTCTTGCATTAGTTCCTACTTCTGGTACCACATCAGCAACGCGG
ACGTCTTTCGGAAGAAGCGCTCCCGCAATGTCGACCAAGGGTGCAGCATT
TAAGACTTTGGCAGCACCCACCGAGTACGAAGAGGCTTTTTCCCCCGCCC
TTCCCATCAGTCCTGCCCCTCAAGCCCTCAGCCTCTCGCCCACTGCTTCC
TTGCCCCCCTGGCATCTCTCCCCTTATCCTTCCCTCTTTTCCCAGGTCAT
TAAAAAGTCTCGCTTCTTGACTCACGCCGTCTCTGCTACGTCATTTGCCG
AAGCCCAGGACTTCTTGAAGCGGGTGTCTGATTTGAAGGCCACGCATAAT
TGTTGGGGATGGCGCGGACGAGGCGAAGAGCGTAGTTCGGACGATGGCGA
GCCTGGCGGGACGGCCGGGCGGCCCATCCTCTCTGCCATAGAAAGCGAGG
AGTTGGTGGACGTGGTTGTGGTGGTGACAAGGTATTTTGGGGGCATTAAG
CTTGGCGCTGGTGGCCTGGTGCGGGCGTATGGCGGCGTGGCGCGAACATG
TTTGAGGAACGCAGAGACAGTGACTCATATTCCCAAGGTTTTGGTGCGAT
TGATAGCACCTTTGGCCATGTCGGGGGCAGTCTTCCAGACCATCAGTCGT
GTTGAGAAGGTAGGGGAGGACTACACGGCTGAGGAGGTGATGGTGGACGT
CAAGGTGGAGGCGAGTCAAGTGGAGGGACTGCGGCAGCAGCTGCAGGACG
CCACCAAGGGGGCAGGAAGGTTGGAAGAAAAAGCATGAAAAGAAATGAAC
TTAAAGAAATGGTTTACAATCACAACGAA

protein sequence of NO02G00560.1

>NO02G00560.1-protein ID=NO02G00560.1-protein|Name=NO02G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MPGSLLPRRPPSTIVVLLLFLILQVMLAAARRSCASYRPVSVTLALVPTS
GTTSATRTSFGRSAPAMSTKGAAFKTLAAPTEYEEAFSPALPISPAPQAL
SLSPTASLPPWHLSPYPSLFSQVIKKSRFLTHAVSATSFAEAQDFLKRVS
DLKATHNCWGWRGRGEERSSDDGEPGGTAGRPILSAIESEELVDVVVVVT
RYFGGIKLGAGGLVRAYGGVARTCLRNAETVTHIPKVLVRLIAPLAMSGA
VFQTISRVEKVGEDYTAEEVMVDVKVEASQVEGLRQQLQDATKGAGRLEE
KA*

mRNA from alignment at chr2:193667..196422-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO02G00560.1 ID=NO02G00560.1|Name=NO02G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=2756bp|location=Sequence derived from alignment at chr2:193667..196422- (Nannochloropsis oceanica)
TGTAGACATGGTATCTGTGTGCTTTTCTTAGATGCATAGACGCATTCGGA
GTATACTGCCTGTGCTGCGGCGCACATGAACGGCAATACAATGCGGTGCC
TGTAACATCTACTACTTGTGGGGATGTAACCAATTTCCATTCCATCATCT
ATTCGTTATAAATAAACATGCTTCCCTTCGCTCTTACTGTTGCTGCCGCT
GCTGCCGCTGCTGCTGCTACTGCTGCTACTGCTATGGTTTATATCTCCTC
TCCTCCATCTCATTTCCCTTCTCCTTCATCTCCTCTTTGATTTTTCTCTC
TTGTTGTCGTTTGGCGGCCGCCCACACGCTATAGCGATGCATGACGATGC
TCCCTGCAACTGCCACATTTAACGACGCGGTGCCCTGCGAAAGGAGCAGG
GAGAGAAGGAGGAAGGGAAGGAGAGAGGTGAGATAAAAGCAAGAGGGAGA
TTGGAGAAAAGTAAACACGTACCTGGCCATACTGGCTTATATACATGAAT
CCATCGCAAACCCTTGCCTGCCTTGAAGACATGCCCGTTCCCTCATTCCC
GAGCAGTAACGCCACTCCTCCTCCTCCTCCTCCTCCGCCCCCTTTGTCCC
ATGGGGCCTCCTCCACATTTACCGCCGTCTCTCCAATCTCTATTCCCCAA
ACTTGTATATTTTGAGCATGCAAGTAATCACGGCATTCCTCCAATGTCCC
GTCAAAGCGTCGATATAGAGGCGTGGGAGGATGCGGTGGCTCTGCCTCTC
CCTCCACAGCAGCAAAGGCAGTCGCGAGTCGCTTCGGGACGTGGGAGAGT
TCGTCAAAGCCCGGCTGACCTACAACCAGGACCTCGGCTCCAAAGGCAGC
CGCGGAGGTAAGGAGTGTACGGACATTCTGACGCTTGGAGATGTGGTGTA
GAAGAAGGAAGAGGCGTGGCGATGGTGGAGACATTGACTCGGATGAGATG
GGGTGGGTTTCGCCATTTACGACGACAGGCTCCATTTCCGTACCGCGTAG
GCGATGGGACGATAGCAATGACTGTCGTGTGTTTATAGTAGTAGTGGTTT
CAGGTTGTTTAAGACTGGTAATTGAGGGTTAGTTTTGCAACCTCCCCACT
AACACAAATACGCCCCACACGCGCAAACAACACAGACGAGCCGAGTACCA
TGACCATCGCCACAACTACAATAACAGTAAGATCAAAAAGCTGAAGGGGG
GAGCGCTCTTTATTTCGCGGGCGCTAGCCATGCCCGGCAGCCTCCTGCCA
AGACGCCCTCCCTCAACGATCGTCGTCCTGCTACTATTTTTAATTCTGCA
AGTGATGCTTGCAGCCGCCCGCCGTAGCTGCGCTAGCTATCGACCCGTCT
CGGTCACTCTTGCATTAGTTCCTACTTCTGGTACCACATCAGCAACGCGG
ACGTCTTTCGGAAGAAGCGCTCCCGCAATGTCGACCAAGGGTGCAGCATT
TAAGACTTTGGCAGCACCCACCGAGTACGAAGAGGTACGTCGGCGGCAAG
AAGCGAAATGGCAAGGGATAACAGGAAGGTTTCACTCAAGAATGTCCTAC
CTCCTTTCCGCCTATTTTCTCAAGGCTTTTTCCCCCGCCCTTCCCATCAG
TCCTGCCCCTCAAGCCCTCAGCCTCTCGCCCACTGCTTCCTTGCCCCCCT
GGCATCTCTCCCCTTATCCTTCCCTCTTTTCCCAGGTCATTAAAAAGTCT
CGCTTCTTGACTCACGCCGTCTCTGCTACGTCATTTGCCGAAGCCCAGGA
CTTCTTGAAGCGGGTGTCTGATTTGAAGGCCACGCATAATTGTTGGGGAT
GGCGGTACGTGAGGAGGGAGACTTTGCGTTCTTCGGTGGGCGGGTGAGAC
AAGAGTGGAACACGAGTGTATGCTCTGCGTCCATCAAAAAGATTGTTTTC
CGAAATGATGCATGCATACACGCACGACAACAATACTTACTCCACTTGTC
CTCTCTCTCTCCTACCTCCCTTAACAAATGAACAGCGGACGAGGCGAAGA
GCGTAGTTCGGACGATGGCGAGCCTGGCGGGACGGCCGGGCGGCCCATCC
TCTCTGCCATAGAAAGCGAGGAGTTGGTGGACGTGGTTGTGGTGGTGACA
AGGTAATGTTATGAAAAGAGCGGAGGGAAGGAGGGATGGGGGGAGGGAGG
GAAGAGAAGGTCGATGTTGTTAAGGAGGGGAGGGAGGGGATGAGGTTGAT
GAGCCCTTTTTTCTGCATGCACTTCCTTCAGCTATGTACCAATATTATTG
ATTTTAAGCCCGCTTATCGTTAAATTAAAATTAAACAAGGTATTTTGGGG
GCATTAAGCTTGGCGCTGGTGGCCTGGTGCGGGCGTATGGCGGCGTGGCG
CGAACATGTTTGAGGAACGCAGAGACAGTGACTCATATTCCCAAGGTTTT
GGTGCGATTGATAGCACCTTTGGCCATGTCGGGGGCAGTCTTCCAGGTGA
GTGTTCATAAATTTTATTTCTAAACTAATTTATACTATTTTATGCTATGT
ATTTCTATTTCATTTACTTGTTCGAACTCCATTTCATCGAAACTTCCATC
AAAACCCCACGACAGACCATCAGTCGTGTTGAGAAGGTAGGGGAGGACTA
CACGGCTGAGGAGGTGATGGTGGACGTCAAGGTGGAGGCGAGTCAAGTGG
AGGGACTGCGGCAGCAGCTGCAGGACGCCACCAAGGGGGCAGGAAGGTTG
GAAGAAAAAGCATGAAAAGAAATGAACTTAAAGAAATGGTTTACAATCAC
AACGAA

Coding sequence (CDS) from alignment at chr2:193667..196422-

>NO02G00560.1 ID=NO02G00560.1|Name=NO02G00560.1|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at chr2:193667..196422- (Nannochloropsis oceanica)
ATGCCCGGCAGCCTCCTGCCAAGACGCCCTCCCTCAACGATCGTCGTCCT
GCTACTATTTTTAATTCTGCAAGTGATGCTTGCAGCCGCCCGCCGTAGCT
GCGCTAGCTATCGACCCGTCTCGGTCACTCTTGCATTAGTTCCTACTTCT
GGTACCACATCAGCAACGCGGACGTCTTTCGGAAGAAGCGCTCCCGCAAT
GTCGACCAAGGGTGCAGCATTTAAGACTTTGGCAGCACCCACCGAGTACG
AAGAGGCTTTTTCCCCCGCCCTTCCCATCAGTCCTGCCCCTCAAGCCCTC
AGCCTCTCGCCCACTGCTTCCTTGCCCCCCTGGCATCTCTCCCCTTATCC
TTCCCTCTTTTCCCAGGTCATTAAAAAGTCTCGCTTCTTGACTCACGCCG
TCTCTGCTACGTCATTTGCCGAAGCCCAGGACTTCTTGAAGCGGGTGTCT
GATTTGAAGGCCACGCATAATTGTTGGGGATGGCGCGGACGAGGCGAAGA
GCGTAGTTCGGACGATGGCGAGCCTGGCGGGACGGCCGGGCGGCCCATCC
TCTCTGCCATAGAAAGCGAGGAGTTGGTGGACGTGGTTGTGGTGGTGACA
AGGTATTTTGGGGGCATTAAGCTTGGCGCTGGTGGCCTGGTGCGGGCGTA
TGGCGGCGTGGCGCGAACATGTTTGAGGAACGCAGAGACAGTGACTCATA
TTCCCAAGGTTTTGGTGCGATTGATAGCACCTTTGGCCATGTCGGGGGCA
GTCTTCCAGACCATCAGTCGTGTTGAGAAGGTAGGGGAGGACTACACGGC
TGAGGAGGTGATGGTGGACGTCAAGGTGGAGGCGAGTCAAGTGGAGGGAC
TGCGGCAGCAGCTGCAGGACGCCACCAAGGGGGCAGGAAGGTTGGAAGAA
AAAGCATGA

Synonyms

Publications