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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr2 | genome | chr2:99719..102974 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO02G00280.1 vs.
Match: XP_005853535.1 (ethylmalonic encephalopathy 1 [Nannochloropsis gaditana CCMP526]; EKU22823.1 ethylmalonic encephalopathy 1 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 335.5 bits (859), Expect = 2.300e-88 Identity = 186/385 (48.31%), Postives = 244/385 (63.38%), Query Frame = 0
Query: 17 AGALSEADIQELVPRFSGWLYLCTDSGPDSGV-PGGFPSIVKGHEGGKHVHVPVNHSD-LDLALTRRLFKARATLVGPAPSTTGPLFITCRSNARAGAVALLYYAQDKKIEAASAPSPEDIIEWGRKQGLSFFSNAALVDWVMASLYFILKGPEERPRPLFHQLFEPESSTYTYLLADPESKEAILIDPVDLMVERDVKLVKELGLTCLFGVNTHCHADHVTGTHLLKQQIPGLKSVIARTSEAKADVLKEDKEKIRFGQYYLEFRATPGHTSGCMSLVMDDRSMVFTGDALLIRGCGRTDFQQGDAHMLFQSVHSRLFTLPGDCVVYPAHDYHGRMSSSIREEKQHNPRLS-KSEEEFVTLMKNLNLPYPKKIDEALPRNLVCG 399
AG L EA+ L ++ LYL TD G D G+ P GF S+ G H+PV+ D L L L +A L PA + C S RA AV L A ++ + + + + + L F N +L DWV+A++ + +E P LF L+E S TYT+LL P +KEAILIDPVDL VERD++++KE+GLT + +NTHCHADHVTG+ LL Q++PG KS+IA+ S AKA + E ++RFG+ Y+E RATPGHT+GCM+ V DD M FTGDALLIRGCGRTDFQQG +F+S+ +++F+LP + VYP HDY GR+ S+I EEK+ N RLS KS+EEF+ +M NL L YPKKID ALP NLV G
Sbjct: 65 AGKLGEAETSALSDKYKSVLYLATDKGADKGIEPNGFASL----RGLTTRHLPVDVKDGLSLQLATDALQALDELPAPA-------LVVCSSGGRASAVQCLRKATEE------GWTKDQTLAYALEMKLPFVKNPSLKDWVLATVA-AREYKDELPL-LFRPLYEETSWTYTFLLGCPVTKEAILIDPVDLTVERDLQVIKEMGLTLVAALNTHCHADHVTGSGLLAQKVPGCKSMIAKISGAKASIHLEPGNRVRFGRRYVEARATPGHTNGCMTFVTDDMKMAFTGDALLIRGCGRTDFQQGSPETMFESIWTQIFSLPHETSVYPGHDYRGRLMSTIGEEKRFNSRLSGKSKEEFIEIMNNLKLAYPKKIDVALPANLVDG 430
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO02G00280.1 ID=NO02G00280.1|Name=NO02G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1938bp AACCAAACAAGCAGAGCTACTCAAGCCGCTAAGCATCTATACCATGGCAC CCCCTTCCTTCAAGCCCTTCGGTGATGACGGTACCTACGTTGCCGGAGCC CTGTCCGAAGCCGACATTCAAGAGCTCGTCCCGCGCTTCTCTGGGTGGCT TTACCTCTGCACTGATTCGGGACCTGACAGCGGCGTTCCCGGGGGCTTTC CCAGCATTGTCAAAGGACATGAGGGGGGTAAGCATGTTCACGTCCCGGTC AACCACTCCGACCTGGACCTGGCCTTGACCCGCCGCCTGTTTAAAGCACG CGCTACACTTGTCGGTCCTGCTCCTTCTACTACCGGCCCCCTTTTTATCA CCTGCCGATCCAATGCGCGGGCCGGGGCCGTGGCCTTGCTGTACTATGCA CAGGACAAGAAAATTGAGGCTGCCAGCGCCCCTTCTCCCGAAGATATTAT CGAATGGGGAAGGAAGCAGGGCCTTTCTTTCTTCAGCAACGCGGCGCTGG TGGATTGGGTGATGGCTTCGTTGTATTTCATTTTAAAGGGACCCGAGGAA CGCCCGAGGCCTCTATTTCATCAGCTTTTTGAGCCGGAGTCGTCTACGTA TACTTACTTGCTGGCAGACCCGGAGAGCAAGGAAGCCATTCTGATCGATC CCGTAGACCTGATGGTGGAAAGGGACGTGAAGCTCGTGAAGGAGCTTGGC TTAACCTGTCTGTTTGGGGTCAACACGCACTGTCACGCCGACCACGTCAC TGGCACGCACCTCCTGAAGCAGCAGATCCCGGGGTTGAAGAGCGTCATCG CCAGGACGTCCGAAGCCAAGGCAGATGTGCTGAAGGAGGACAAGGAGAAG ATCAGGTTCGGGCAATACTATTTGGAGTTTCGCGCCACGCCGGGGCACAC GAGTGGCTGTATGTCTCTGGTCATGGACGATCGCTCTATGGTCTTTACAG GAGATGCCCTTCTCATCCGCGGCTGTGGTCGGACAGACTTCCAGCAGGGT GATGCCCACATGCTCTTCCAATCCGTCCACTCGCGTCTCTTCACGCTACC CGGAGATTGCGTGGTGTATCCGGCTCACGACTACCACGGGCGGATGTCCT CCAGCATCCGGGAGGAGAAGCAACACAACCCCCGCCTGTCCAAGTCGGAA GAAGAGTTTGTGACGCTGATGAAGAATCTTAACCTTCCCTATCCCAAGAA GATCGACGAGGCCTTACCTCGGAATCTGGTCTGCGGGTGCTGAGCAGCCG CCTGGCCGTTCCTCCCTCCCTCCCTCCCTCACTCCCTCCCTCCTTCCCTC CCTCCCATTCTCCTCCCATAGGGAGGGAGGGGTTTGGAGTCTGGAAAGGA AGAGAGGGAGCGAGGCAAGAGGGGAGGGAGAGGAGGGGGGTGGGATGGGG GAATCAGCCCGGGTTTCTCACTGAATCACTGAGCAGGGGGCGGGGGGAGG GGGGGTGTGAGGGTATGAAGGGAAGGGTGTGAGGGTATGAATATGAAGGG AAGGGTGTGAGTTTGAAGGAAAGGGTGTGAGTATGGAAGGGGGGGGAGGT TAAGCCGCCCATGTTAGCGGGGATGGAAATGCGAGATGTGAATGAGGATT TTTGGAGTAGAGACTAAGAAGGATTTGCCTGTGTGGCCTGCGCCGGGTGC CTCAAGTTGGTTTCTGTATTACGTAGTTTGATTCGATTCGGTCTCATGTA ATTTGATTTGATTTGATTTGATCGAATCTAATTTGATTTTGATTTGACCG CCTGCCTAAATGCCACGGATCGGGCGGGACGCGTATATGAAGGACATGTG AGTAGGGAGAGAGGGGAGCGAGAGGGGAAGAGGGGGGGAAAGACGTTAAT GATTAAGAGAGAGAGAGAGAGGGAGAGAGGGAGAGAGGGAGAGAGAGGGA GAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAAGGGGG back to topprotein sequence of NO02G00280.1 >NO02G00280.1-protein ID=NO02G00280.1-protein|Name=NO02G00280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp MAPPSFKPFGDDGTYVAGALSEADIQELVPRFSGWLYLCTDSGPDSGVPG GFPSIVKGHEGGKHVHVPVNHSDLDLALTRRLFKARATLVGPAPSTTGPL FITCRSNARAGAVALLYYAQDKKIEAASAPSPEDIIEWGRKQGLSFFSNA ALVDWVMASLYFILKGPEERPRPLFHQLFEPESSTYTYLLADPESKEAIL IDPVDLMVERDVKLVKELGLTCLFGVNTHCHADHVTGTHLLKQQIPGLKS VIARTSEAKADVLKEDKEKIRFGQYYLEFRATPGHTSGCMSLVMDDRSMV FTGDALLIRGCGRTDFQQGDAHMLFQSVHSRLFTLPGDCVVYPAHDYHGR MSSSIREEKQHNPRLSKSEEEFVTLMKNLNLPYPKKIDEALPRNLVCGC* back to topmRNA from alignment at chr2:99719..102974- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO02G00280.1 ID=NO02G00280.1|Name=NO02G00280.1|organism=Nannochloropsis oceanica|type=mRNA|length=3256bp|location=Sequence derived from alignment at chr2:99719..102974- (Nannochloropsis oceanica) AACCAAACAAGCAGAGCTACTCAAGCCGCTAAGCATCTATACCATGGCAC
CCCCTTCCTTCAAGCCCTTCGGTGATGACGGTACCTACGTTGCCGGTACG
TAGACAAGACATGGCAGTGTGACAGTGGGTCACGCAGTGACAATTGTCGA
CCTTTGTCCTTTCCACTTGATTTCTATTCTCTCCCTCCTCGTCTCACAAC
AGGAGCCCTGTCCGAAGCCGACATTCAAGAGCTCGTCCCGCGCTTCTCTG
GGTGGCTTTACCTCTGCACTGATTCGGGACCTGACAGCGGCGTTCCCGGG
GGCTTTCCCAGCATTGTCAAAGGACATGAGGGGGGTAAGCATGTTCACGT
CCCGGTCAACCACTCCGACCTGGACCTGGCCTTGACCCGCCGCCTGTTTA
AAGCACGCGCTACACTTGTCGGTCCTGCTCCTTCTACTACCGGCCCCCTT
TTTATCACCTGCCGATCCAATGCGCGGGCCGGGGCCGTGGCCTTGCTGTA
CTATGCACAGGACAAGAAAATTGAGGCTGCCAGCGCCCCTTCTCCCGAAG
ATATTATCGAATGGGGAAGGAAGCAGGGCCTTTCTTTCTTCAGCAACGCG
GCGCTGGTGGATTGGGTGATGGCTTCGTTGTATTTCATTTTAAAGGGACC
CGAGGAACGCCCGAGGCCTCTATTTCATCAGCTTTTTGAGCCGGAGTCGT
CTACGTATACTTACTTGCTGGCAGACCCGGAGAGTGAGTGGGAGGAGAAG
TGGCAGGAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGGGAGA
AGAGGTGGAGGTGTGCATGACGGTCTTGGTTGCATGTCCCATACTCATAT
TTCTATCCTTTTTCCCTCTGTCCCTTGCCAGGCAAGGAAGCCATTCTGAT
CGATCCCGTAGACCTGATGGTGGAAAGGGACGTGAAGCTCGTGAAGGAGC
TTGGCTTAACCTGTCTGTTTGGGGTCAACACGCACTGTCACGCCGACCAC
GTCACTGGTAGGGTGGGAGGGGAGGGAGGGAAAGAAGAATGATTGAAAGA
GGGCGATCCGAGCAGTAGTGATGCTTGGCGGGCTGATTCTTGTACCCTCT
TCTGTTCTCCCCCCCCTCTCCCTCCCCTTTTACTCTCTCTCTCTCTTGGT
GTTTCTCGTTCTCTTCCTTTCGTCGCCCTCGTTTTCTCTCATTTCGACGT
GCTGTTACCCTCCCTCCCTCCTCAGGCACGCACCTCCTGAAGCAGCAGAT
CCCGGGGTTGAAGAGCGTCATCGCCAGGACGTCCGAAGCCAAGGCAGATG
TGCTGAAGGAGGACAAGGAGAAGATCAGGTAGGGAGGGAGGGAGGGAAGG
AGGAAGGGAGAGTAGAATGAGCATTCTGTAGTCCATACATGCATACATGA
GTACCTGCTCCCTTAAATCAATGGGCTTCACTCACCCCTCCCTCCCGCCC
TCTCTCCCTCCCTCCCATCCAGGTTCGGGCAATACTATTTGGAGTTTCGC
GCCACGCCGGGGCACACGAGTGGCTGTATGTCTCTGGTCATGGACGATCG
CTCTATGGTCTTTACAGGAGATGTGCGTAGGGCGGGAGGGTGACCTTTGT
TCCTGATTGCAAGGAAGACTCAAGCTCGTTTGGGTAGTCGTGGTGTGTCT
AGTACTCATCTCCTTCCCTCCCTACCTCCTTCCCTACCTCCCTCCTTCTT
TCCTCAGGCCCTTCTCATCCGCGGCTGTGGTCGGACAGACTTCCAGCAGG
GTGATGCCCACATGCTCTTCCAATCCGTCCACTCGCGTCTCTTCACGCTA
CCCGGAGATTGCGTGGTGAGGGCGGGAGGGAGGGAGGGAGGGACGGCGGG
AGGGAGGGACGGCGGGAGGGAGGGAGGGGTTAGCAGAGCAACGATAGGGC
GGGTAATCGCCTACGCGGAGACAAGAAGAGCTCGCTGAGGATTCTAATCT
CTCCCTCCCTCCCTCCCTCCCTCCCTCTTCCATGTAGGTGTATCCGGCTC
ACGACTACCACGGGCGGATGTCCTCCAGCATCCGGGAGGAGAAGCAACAC
AACCCCCGCCTGTCCAAGGTAATAAATTACCCACCAATATAAATATATAT
TTATATATAATTTATTACCCACCAACATTAATGTTTATATATAGATATAA
ATACACGTAATTACCCACCAGTGGAATTTTGTGCATGTATAGATTTATAG
ATACGTAATTACCCACCCATGGAAATATATGTATATAATTACCCACCAAT
GGAGATATATGTATATGTGGGTGGAGAGAGAGATATGCGTGAATAGTATA
AAGGGGGAAGGCTCATTTACCAACCATACAGATAGCTGAGAAGGAAGACT
AGAGAGAGAGAAAGGGGGCCGCACCTCCGCCTGCCTCGTTGCAATCGCTA
ACCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCCCGCCTGCAGTCGGAAGAAGAGTTTGTGACGCTGATGAAGAATCTTAA
CCTTCCCTATCCCAAGAAGATCGACGAGGCCTTACCTCGGAATCTGGTCT
GCGGGTGCTGAGCAGCCGCCTGGCCGTTCCTCCCTCCCTCCCTCCCTCAC
TCCCTCCCTCCTTCCCTCCCTCCCATTCTCCTCCCATAGGGAGGGAGGGG
TTTGGAGTCTGGAAAGGAAGAGAGGGAGCGAGGCAAGAGGGGAGGGAGAG
GAGGGGGGTGGGATGGGGGAATCAGCCCGGGTTTCTCACTGAATCACTGA
GCAGGGGGCGGGGGGAGGGGGGGTGTGAGGGTATGAAGGGAAGGGTGTGA
GGGTATGAATATGAAGGGAAGGGTGTGAGTTTGAAGGAAAGGGTGTGAGT
ATGGAAGGGGGGGGAGGTTAAGCCGCCCATGTTAGCGGGGATGGAAATGC
GAGATGTGAATGAGGATTTTTGGAGTAGAGACTAAGAAGGATTTGCCTGT
GTGGCCTGCGCCGGGTGCCTCAAGTTGGTTTCTGTATTACGTAGTTTGAT
TCGATTCGGTCTCATGTAATTTGATTTGATTTGATTTGATCGAATCTAAT
TTGATTTTGATTTGACCGCCTGCCTAAATGCCACGGATCGGGCGGGACGC
GTATATGAAGGACATGTGAGTAGGGAGAGAGGGGAGCGAGAGGGGAAGAG
GGGGGGAAAGACGTTAATGATTAAGAGAGAGAGAGAGAGGGAGAGAGGGA
GAGAGGGAGAGAGAGGGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGA
AGGGGG back to topCoding sequence (CDS) from alignment at chr2:99719..102974- >NO02G00280.1 ID=NO02G00280.1|Name=NO02G00280.1|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at chr2:99719..102974- (Nannochloropsis oceanica) ATGGCACCCCCTTCCTTCAAGCCCTTCGGTGATGACGGTACCTACGTTGC CGGAGCCCTGTCCGAAGCCGACATTCAAGAGCTCGTCCCGCGCTTCTCTG GGTGGCTTTACCTCTGCACTGATTCGGGACCTGACAGCGGCGTTCCCGGG GGCTTTCCCAGCATTGTCAAAGGACATGAGGGGGGTAAGCATGTTCACGT CCCGGTCAACCACTCCGACCTGGACCTGGCCTTGACCCGCCGCCTGTTTA AAGCACGCGCTACACTTGTCGGTCCTGCTCCTTCTACTACCGGCCCCCTT TTTATCACCTGCCGATCCAATGCGCGGGCCGGGGCCGTGGCCTTGCTGTA CTATGCACAGGACAAGAAAATTGAGGCTGCCAGCGCCCCTTCTCCCGAAG ATATTATCGAATGGGGAAGGAAGCAGGGCCTTTCTTTCTTCAGCAACGCG GCGCTGGTGGATTGGGTGATGGCTTCGTTGTATTTCATTTTAAAGGGACC CGAGGAACGCCCGAGGCCTCTATTTCATCAGCTTTTTGAGCCGGAGTCGT CTACGTATACTTACTTGCTGGCAGACCCGGAGAGCAAGGAAGCCATTCTG ATCGATCCCGTAGACCTGATGGTGGAAAGGGACGTGAAGCTCGTGAAGGA GCTTGGCTTAACCTGTCTGTTTGGGGTCAACACGCACTGTCACGCCGACC ACGTCACTGGCACGCACCTCCTGAAGCAGCAGATCCCGGGGTTGAAGAGC GTCATCGCCAGGACGTCCGAAGCCAAGGCAGATGTGCTGAAGGAGGACAA GGAGAAGATCAGGTTCGGGCAATACTATTTGGAGTTTCGCGCCACGCCGG GGCACACGAGTGGCTGTATGTCTCTGGTCATGGACGATCGCTCTATGGTC TTTACAGGAGATGCCCTTCTCATCCGCGGCTGTGGTCGGACAGACTTCCA GCAGGGTGATGCCCACATGCTCTTCCAATCCGTCCACTCGCGTCTCTTCA CGCTACCCGGAGATTGCGTGGTGTATCCGGCTCACGACTACCACGGGCGG ATGTCCTCCAGCATCCGGGAGGAGAAGCAACACAACCCCCGCCTGTCCAA GTCGGAAGAAGAGTTTGTGACGCTGATGAAGAATCTTAACCTTCCCTATC CCAAGAAGATCGACGAGGCCTTACCTCGGAATCTGGTCTGCGGGTGCTGA back to top
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