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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:511519..514678 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G01630.1 vs.
Match: EWM24646.1 (snare component [Nannochloropsis gaditana]) HSP 1 Score: 226.9 bits (577), Expect = 6.500e-56 Identity = 118/160 (73.75%), Postives = 132/160 (82.50%), Query Frame = 0
Query: 71 MGRLLAHGTRTSSSALLQRYREIFNYYTSEFHKTQVALQRKRESAELLKSGAG---RGVTKKFGEWGNPQMDQLLRERNAIHSSLRSVGSILSQAIETKDGLRAQRQGLSGANTGLAGLATNLPSISRVVDAIHRKKTRDNAIIGLIIASCLCFTIWYLV 228
MG++LAHG R SSSA+LQRYREI +YY ++F K+Q LQRKRE+AELL + AG TK +WGNPQMDQLLRERNAIHSSLR V SILSQA+ETKDGLRAQR L+GAN+GLAGLA NLPSISRVVDAI R KTRDN IIGL+ A CLCFTIWYLV
Sbjct: 1 MGQMLAHGARPSSSAVLQRYREILDYYANDFQKSQTVLQRKRETAELLSTRAGGKPNTGTKNGADWGNPQMDQLLRERNAIHSSLRGVDSILSQAMETKDGLRAQRHSLTGANSGLAGLANNLPSISRVVDAIQRIKTRDNIIIGLLTACCLCFTIWYLV 160
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G01630.1 ID=NO14G01630.1|Name=NO14G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=2652bp TTGAAGTTTTTCTATTTTACGATTGTCTTCGTTTCCTTTTTCTGCGGATT TGGTGGGGGGGGGTTTCCTCTCTTCTCTACCCGTCCGCCAGCCCACCCAT CCCCCCGACAATCATTCAATGCAAGTACTCAGCAACCAAGTAGTGAATGG CGCCTGTGGCCTGGTCCCGAACGCGCAGCCGGCCATCCATTTCCAGCCCC AGTGGAGTAACGACCACATCGTCGTCCCGCCGCCGGTACTCCTTGCCCCA TGTAGCCAACCCCTCCCAATCAGCTACCACGAGCTCCGCCGTGTCTTCTG TCGCCGCCTGGCCTATCCACTCCGTCACGGCCCGGGCAATGCTAATCGAC AAGTCCTTGGCAGTATCCGCGTCCGAGACTGGTAAGCCATGGTCGGCCAG GCAGGTGGCGGTGCGCCCCCGATCGGCGCCGGCGGCAGGCACTGGCGGCG CCTGGACCACGTTGACGCCAATACCCACCAGGTAGTAGGCTGATGAGCTG TCCATTTCTACAAGCAAGCCGCTCACCTTTTCGTCACTGAGTAGCACGTC ATTGGGCCATTTGAGGTGGACGTTGGCCCTGGCCTCCGAGGTGGGTAAGA CATGGATGATCGCGCGTGCCACCAGCGTGCCTATGCGGAGAGGCAGCAAA GTGATAGCGTACGGCAATAAGGATACGGCGCTTCTGGGAAGGGCCAAAGT CAGAAAAGCGTTGCCCACTATCCCGACCCAAGCACGGCCACTTGTACCCC TGCCCTTGGTCTGCATCCCGGCCCCCAAGGCTAGCACGTCCACGCCAGCC CTCGACAAGGCCTCCCCCGTGCTGCTCACCAGCAACGCTTTCATGGCGTC CTGCGTCGAATTAACCTCCGGTGACCACACAAAATGCAGACGCTTCCCGT TGCTGGTCTCGATGTCCACGCCAGTACTGCTGCTGCTGAGGCTTGTGCTC CTGGTTGGCGAGCTGAGGGTGGAAGTGGAGGATGCCATCACAGTCGTCGC TGTGAGAAGGACAGTTCGGAGCAGCGATGAGGCAGGAGAGGCCCTTGCTC GGGCAATGAAACAAGCAGGAGAGGCAAACGTGGTGCCTTGACTAGCTGCC GCGCAGACGGCAGTCACGCTGCAGCAAGCCCAGGTCAAAGCCAAAAGAAG AAAGCAAGAGGGCGGCGGCGGTATTTGTCCTTGCCGCCAGATCATGAGAG CATCAGGCCACCCAACTGACAGACTAGTGATGAAGCAACAAGGAGATTCC TGTGTGTTTTTGTGTGGTGGTTTGCTGTGCAGGCGGTGATGGCAAAGTGG GATTGGAGAGATTGGAAAGATCCCAATTGTGATTGGGACTTGCGGGCCTC AACCCCCCACTCTTAGGCGCGATCAGGACGTGAAATTATATGCAACATTT TTTTAAAGGGGTTTTAGGCGTATGAAAACAAAGCTGGAAAGGGGGAAAGG GAAAAACATGTTTTTGCTCCTCTTTTTGGGGGTACTGGCGCTCGCGGAGA TGGCGAACTTCGCAGCCTGAACGCGCGTCATCACAACACCCAAGGCAACT ATTATTCATCATCATGCACTCCTGTACGTCTCGGGTGACCATTGGAACCA CAAGGGCTCAAAATCTCGTAACTTCATCAAACACAAAATACACAGCTACG GAAGGAGAGTGAGGAGAGGCAGGCTTGGGAAAGGTGCGGGTTGTTGTCGG CGCGCGCGTCCACCAGACACCTTCCCCCCACTCTCCCGTCGAAGCCTAAG CATCACCATTCGGGCACGCGGTAGCGGCAGTGCGGGCGGCGTTGGTGGTG GCACCACCGGGGGCAGCAGCATTAGCAACGGCGGCTCTAGCCCTCACGCG CTCTTTTCAACATTTTCCACTACGGCCGCCGCCGCGGCAACTTTCCCAAA CCCAATGGGGGATTGGGAGGAGCTCAAACGCAAAGTGCGCGGCATAGAGA GCAAGCTCGAGGAAAAATGCCAGGCACACGCCTTTCTAGCGCAGCCCATG AATTCGGACTTGCTTTATGATGAAGAGAATCCACTGCTGGAGAGCTCAGA AGAGCAATGTCTGGCCACTGAGATTGAGAATCTTCTGGCGGCGCTTTCGG AATGCAACGACGCCATGGGTCGATTGCTCGCGCATGGGACGCGTACCTCG AGCTCGGCCTTGTTGCAGCGATACAGGGAAATTTTCAACTACTACACGAG TGAGTTCCACAAGACACAGGTAGCCCTTCAGAGGAAGCGCGAGAGCGCTG AGCTCCTCAAGAGTGGAGCCGGTCGGGGGGTTACCAAGAAATTCGGAGAA TGGGGCAACCCTCAGATGGATCAATTACTGCGGGAGCGCAATGCCATTCA CAGCTCTCTCCGCAGTGTCGGTAGCATCCTGAGCCAGGCCATAGAGACGA AGGATGGGTTGCGGGCGCAACGCCAGGGGTTGTCCGGGGCCAATACGGGT CTCGCAGGGCTTGCCACCAACTTGCCCTCGATCAGTCGTGTGGTGGACGC CATCCACCGGAAAAAGACGCGAGACAATGCCATCATCGGCCTCATTATTG CTAGCTGTCTTTGCTTTACGATATGGTACCTTGTCTGATTCGAAACATAC ATGTGCACTGTCGCTCAAAAGAAGACAAGGAAAATCGAAATAGGCATGAA GT back to topprotein sequence of NO14G01630.1 >NO14G01630.1-protein ID=NO14G01630.1-protein|Name=NO14G01630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp MGDWEELKRKVRGIESKLEEKCQAHAFLAQPMNSDLLYDEENPLLESSEE QCLATEIENLLAALSECNDAMGRLLAHGTRTSSSALLQRYREIFNYYTSE FHKTQVALQRKRESAELLKSGAGRGVTKKFGEWGNPQMDQLLRERNAIHS SLRSVGSILSQAIETKDGLRAQRQGLSGANTGLAGLATNLPSISRVVDAI HRKKTRDNAIIGLIIASCLCFTIWYLV* back to topmRNA from alignment at chr14:511519..514678- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G01630.1 ID=NO14G01630.1|Name=NO14G01630.1|organism=Nannochloropsis oceanica|type=mRNA|length=3160bp|location=Sequence derived from alignment at chr14:511519..514678- (Nannochloropsis oceanica) TTGAAGTTTTTCTATTTTACGATTGTCTTCGTTTCCTTTTTCTGCGGATT
TGGTGGGGGGGGGTTTCCTCTCTTCTCTACCCGTCCGCCAGCCCACCCAT
CCCCCCGACAATCATTCAATGCAAGTACTCAGCAACCAAGTAGTGAATGG
CGCCTGTGGCCTGGTCCCGAACGCGCAGCCGGCCATCCATTTCCAGCCCC
AGTGGAGTAACGACCACATCGTCGTCCCGCCGCCGGTACTCCTTGCCCCA
TGTAGCCAACCCCTCCCAATCAGCTACCACGAGCTCCGCCGTGTCTTCTG
TCGCCGCCTGGCCTATCCACTCCGTCACGGCCCGGGCAATGCTAATCGAC
AAGTCCTTGGCAGTATCCGCGTCCGAGACTGGTAAGCCATGGTCGGCCAG
GCAGGTGGCGGTGCGCCCCCGATCGGCGCCGGCGGCAGGCACTGGCGGCG
CCTGGACCACGTTGACGCCAATACCCACCAGGTAGTAGGCTGATGAGCTG
TCCATTTCTACAAGCAAGCCGCTCACCTTTTCGTCACTGAGTAGCACGTC
ATTGGGCCATTTGAGGTGGACGTTGGCCCTGGCCTCCGAGGTGGGTAAGA
CATGGATGATCGCGCGTGCCACCAGCGTGCCTATGCGGAGAGGCAGCAAA
GTGATAGCGTACGGCAATAAGGATACGGCGCTTCTGGGAAGGGCCAAAGT
CAGAAAAGCGTTGCCCACTATCCCGACCCAAGCACGGCCACTTGTACCCC
TGCCCTTGGTCTGCATCCCGGCCCCCAAGGCTAGCACGTCCACGCCAGCC
CTCGACAAGGCCTCCCCCGTGCTGCTCACCAGCAACGCTTTCATGGCGTC
CTGCGTCGAATTAACCTCCGGTGACCACACAAAATGCAGACGCTTCCCGT
TGCTGGTCTCGATGTCCACGCCAGTACTGCTGCTGCTGAGGCTTGTGCTC
CTGGTTGGCGAGCTGAGGGTGGAAGTGGAGGATGCCATCACAGTCGTCGC
TGTGAGAAGGACAGTTCGGAGCAGCGATGAGGCAGGAGAGGCCCTTGCTC
GGGCAATGAAACAAGCAGGAGAGGCAAACGTGGTGCCTTGACTAGCTGCC
GCGCAGACGGCAGTCACGCTGCAGCAAGCCCAGGTCAAAGCCAAAAGAAG
AAAGCAAGAGGGCGGCGGCGGTATTTGTCCTTGCCGCCAGATCATGAGAG
CATCAGGCCACCCAACTGACAGACTAGTGATGAAGCAACAAGGAGATTCC
TGTGTGTTTTTGTGTGGTGGTTTGCTGTGCAGGCGGTGATGGCAAAGTGG
GATTGGAGAGATTGGAAAGATCCCAATTGTGATTGGGACTTGCGGGCCTC
AACCCCCCACTCTTAGGCGCGATCAGGACGTGAAATTATATGCAACATTT
TTTTAAAGGGGTTTTAGGCGTATGAAAACAAAGCTGGAAAGGGGGAAAGG
GAAAAACATGTTTTTGCTCCTCTTTTTGGGGGTACTGGCGCTCGCGGAGA
TGGCGAACTTCGCAGCCTGAACGCGCGTCATCACAACACCCAAGGCAACT
ATTATTCATCATCATGCACTCCTGTACGTCTCGGGTGACCATTGGAACCA
CAAGGGCTCAAAATCTCGTAACTTCATCAAACACAAAATACACAGCTACG
GAAGGAGAGTGAGGAGAGGCAGGCTTGGGAAAGGTGCGGGTTGTTGTCGG
CGCGCGCGTCCACCAGACACCTTCCCCCCACTCTCCCGTCGAAGCCTAAG
CATCACCATTCGGGCACGCGGTAGCGGCAGTGCGGGCGGCGTTGGTGGTG
GCACCACCGGGGGCAGCAGCATTAGCAACGGCGGCTCTAGCCCTCACGCG
CTCTTTTCAACATTTTCCACTACGGCCGCCGCCGCGGCAACTTTCCCAAA
CCCAATGGGGGATTGGGAGGAGCTCAAACGCAAAGTGCGCGGCATAGAGA
GCAAGCTCGAGGTACGTGGCGAGTGTGCGGGGACATAAATACGGAAAGAC
CACCCGCATCATGAGTGGGTGAAAATGGATGGGGCCGTGCAGGCCTAGTT
TGACTATCCTTCAGGAGCGGCTGTGCAGTTGTGGATTGAGAGAGAAAGCA
TGGCCAAGATGGGATCGTATGCAACGAGCTCGCTTACTTCCACGATGACA
CAATGACACGCTACCTTGTCGCTAATATACTCGTGGTAATCCTTCCGTCT
TCGACCATTGCAGGAAAAATGCCAGGCACACGCCTTTCTAGCGCAGCCCA
TGAATTCGGACTTGCTTTATGATGAAGGTGAGTCAAGAGGAGTGGCAAGT
TTATGCATAGAAATATGAGGAAACACGCTAGTCTACATGGTGTATGGCGC
AGATCCCCTCGTCACAAGCTCAGATCCCTCTTCACCTTTTCGCGCAGAGA
ATCCACTGCTGGAGAGCTCAGAAGAGCAATGTCTGGCCACTGAGATTGAG
AATCTTCTGGCGGCGGTAAGTCCGACGATTGGTGTTGTTTAGCCAGGATA
TGGGGAAGTGTTCCAAGCGTTTGCGACTGGGGGGCTCTTAAACACCCGTT
TTGGTACCATGCCCTCAACGTTCACCGCTACCCCCCTCCTTCCGAACACA
GCTTTCGGAATGCAACGACGCCATGGGTCGATTGCTCGCGCATGGGACGC
GTACCTCGAGCTCGGCCTTGTTGCAGCGATACAGGGAAATTTTCAACTAC
TACACGAGTGAGTTCCACAAGACACAGGTAGCCCTTCAGAGGAAGCGCGA
GAGCGCTGAGCTCCTCAAGAGTGGAGCCGGTCGGGGGGTTACCAAGAAAT
TCGGAGAATGGGGCAACCCTCAGATGGATCAATTACTGCGGGAGCGCAAT
GCCATTCACAGCTCTCTCCGCAGTGTCGGTAGCATCCTGAGCCAGGCCAT
AGAGACGAAGGATGGGTTGCGGGCGCAACGCCAGGGGTTGTCCGGGGCCA
ATACGGGTCTCGCAGGGCTTGCCACCAACTTGCCCTCGATCAGTCGTGTG
GTGGACGCCATCCACCGGAAAAAGACGCGAGACAATGCCATCATCGGCCT
CATTATTGCTAGCTGTCTTTGCTTTACGATATGGTACCTTGTCTGATTCG
AAACATACATGTGCACTGTCGCTCAAAAGAAGACAAGGAAAATCGAAATA
GGCATGAAGT back to topCoding sequence (CDS) from alignment at chr14:511519..514678- >NO14G01630.1 ID=NO14G01630.1|Name=NO14G01630.1|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at chr14:511519..514678- (Nannochloropsis oceanica) ATGGGGGATTGGGAGGAGCTCAAACGCAAAGTGCGCGGCATAGAGAGCAA GCTCGAGGAAAAATGCCAGGCACACGCCTTTCTAGCGCAGCCCATGAATT CGGACTTGCTTTATGATGAAGAGAATCCACTGCTGGAGAGCTCAGAAGAG CAATGTCTGGCCACTGAGATTGAGAATCTTCTGGCGGCGCTTTCGGAATG CAACGACGCCATGGGTCGATTGCTCGCGCATGGGACGCGTACCTCGAGCT CGGCCTTGTTGCAGCGATACAGGGAAATTTTCAACTACTACACGAGTGAG TTCCACAAGACACAGGTAGCCCTTCAGAGGAAGCGCGAGAGCGCTGAGCT CCTCAAGAGTGGAGCCGGTCGGGGGGTTACCAAGAAATTCGGAGAATGGG GCAACCCTCAGATGGATCAATTACTGCGGGAGCGCAATGCCATTCACAGC TCTCTCCGCAGTGTCGGTAGCATCCTGAGCCAGGCCATAGAGACGAAGGA TGGGTTGCGGGCGCAACGCCAGGGGTTGTCCGGGGCCAATACGGGTCTCG CAGGGCTTGCCACCAACTTGCCCTCGATCAGTCGTGTGGTGGACGCCATC CACCGGAAAAAGACGCGAGACAATGCCATCATCGGCCTCATTATTGCTAG CTGTCTTTGCTTTACGATATGGTACCTTGTCTGA back to top
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