NO14G01530.1, NO14G01530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01530.1
Unique NameNO14G01530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1461
Alignment locationchr14:480933..482733 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:480933..482733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01530.1 vs.
Match: EWM24669.1 (CCT domain protein [Nannochloropsis gaditana])

HSP 1 Score: 403.7 bits (1036), Expect = 8.300e-109
Identity = 287/492 (58.33%), Postives = 332/492 (67.48%), Query Frame = 0 
Query:    1 MSTLSMQAAPSLGHPMEKLLDNYMMAERGGGA--EEGGAGATFMVEDGGMISYTGVFMDDDEDLDDDASASSTEAEV-MAHLHAALGGSVSSTKASGSNSSSSSSGSTSTSGGTVSAAPEGD-KGEGWKMALLEGLEDFLKVEGAVPAGAAGSGGSRRFSFDLSNLDMQTLEQLAAGATSGLSSRRGSFSLTMLEAEGLMAKGSLPVGTAAPFPSSGPRGNGNGSGLPLGNMRVKQEMPVDTASRSNSVSSLGTTASNSTSASSTDISDPVSNRSMSGATTTSKNKAVKKETSITTSASQATSKSQPKKG---GSSPTGAVTGGTSSLRTTSSGLISAASLLPTPQTPHKAILTPSMPTT-TSTTSSSNGCTNATMVN-SPNGNGGTLVLPIIPKDGIARIGIYTLEERKVRVARFQAKRGRRVWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDIIVGGAVAAAEAAAADGVADGGSSALLTQLMDLDEL 484
            MSTLS+ +APSLG  MEKL DNY  AERG GA  EE G  ATFMVEDGG+ISY G+F+DD ED DD+ S SST+AEV MAHLHAA GG V + +A+   ++SS SGSTSTSG T S AP  D KGE WK A+LE LEDFL+ EG +PA  AG+G +RRFSFDLSNLDMQTLEQLAAG TSG SSRRGSFSLT+LEAEG M K S P  + AP  SSG R +     LP G    ++        + + V     T + +        S P ++ S S  T T  + A++  T           K Q KKG    S+PTG       S     +  +SAASLLPTPQTP K       P   T   SS  G T++   + +PNGNGG LVLP+IPKDG+ARIGIYTLEERK+RVARFQAKRGRR+WRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDIIVGGAVAAAEAAAA G A+G SSAL+ +   LDEL
Sbjct:    1 MSTLSIHSAPSLG--MEKLWDNYAPAERGEGAGCEEAGGSATFMVEDGGIISYAGIFLDDKEDSDDETSDSSTDAEVVMAHLHAAFGG-VGAPQANSIFNTSSGSGSTSTSGSTASIAPGSDGKGEEWKNAVLESLEDFLQTEGGIPA--AGAGANRRFSFDLSNLDMQTLEQLAAGTTSGSSSRRGSFSLTLLEAEGFMTK-SPPASSMAPLLSSGARFHSVPDNLPAGFSHTQE------GCKEHVVCDCKKTLTTALGEDGAGHSVPNASVSASKNTGTGASCALEPLT-----------KPQVKKGFAAASTPTG------ESSPDAPAASVSAASLLPTPQTPPKMPDPGDGPDNKTGANSSGTGSTDSMGTSGTPNGNGGMLVLPVIPKDGVARIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDIIVGGAVAAAEAAAAGGSANGSSSALMNE-QTLDEL 462
The following BLAST results are available for this feature:
BLAST of NO14G01530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24669.18.300e-10958.33CCT domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01530NO14G01530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01530.1NO14G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01530.1.cds1NO14G01530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01530.1.cds2NO14G01530.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01530.1 ID=NO14G01530.1|Name=NO14G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp
ATGAGTACCTTGAGCATGCAAGCGGCCCCCTCGCTGGGCCACCCCATGGA
GAAACTACTGGACAACTACATGATGGCCGAGCGCGGGGGAGGAGCCGAGG
AGGGGGGAGCAGGTGCGACCTTCATGGTGGAAGATGGGGGCATGATTTCT
TACACGGGTGTCTTTATGGACGACGATGAGGATTTAGATGACGACGCCAG
CGCCTCGTCGACTGAAGCCGAAGTCATGGCCCACCTACACGCCGCCTTGG
GGGGCAGCGTCTCCAGCACCAAAGCGAGCGGCAGCAACAGCAGCTCGTCG
AGCTCCGGGAGCACCAGCACGAGCGGTGGCACCGTCAGCGCGGCGCCGGA
AGGGGACAAAGGAGAAGGATGGAAAATGGCCCTGCTGGAAGGTTTGGAAG
ACTTTTTGAAAGTTGAAGGCGCTGTGCCGGCGGGCGCTGCCGGGAGTGGG
GGCAGCCGCCGTTTTTCGTTTGACCTGTCCAACCTAGACATGCAGACCCT
GGAGCAGCTGGCGGCTGGCGCCACCTCGGGCCTGTCCTCGCGCCGAGGCT
CTTTTAGCTTGACGATGCTGGAGGCGGAGGGACTGATGGCCAAGGGCTCT
CTTCCTGTCGGCACTGCGGCCCCATTTCCAAGCAGCGGCCCACGCGGCAA
CGGCAACGGCAGTGGCTTGCCTTTGGGCAACATGCGGGTCAAGCAGGAAA
TGCCTGTGGATACAGCGAGCAGGAGCAATAGCGTATCTTCTCTGGGCACC
ACCGCTAGCAATAGCACCAGTGCTAGCAGCACCGACATCAGCGATCCCGT
CAGCAACCGCAGCATGAGTGGCGCCACCACCACCAGCAAAAACAAGGCCG
TCAAGAAGGAGACGTCCATCACTACCAGCGCCTCGCAGGCCACATCCAAG
TCTCAGCCTAAGAAGGGAGGATCTTCTCCGACGGGCGCAGTCACCGGTGG
CACCAGCAGCCTCAGGACAACGTCCAGCGGGCTCATCTCCGCGGCCTCCC
TCCTGCCCACGCCACAGACGCCGCATAAGGCTATCTTGACCCCAAGTATG
CCGACAACCACCAGCACCACCAGCAGCAGCAATGGTTGCACTAACGCGAC
TATGGTCAACAGTCCGAACGGGAATGGGGGCACGCTAGTGCTGCCGATCA
TCCCCAAGGACGGCATCGCGCGCATCGGTATCTACACGCTGGAGGAGCGG
AAGGTGCGCGTAGCCCGTTTCCAGGCGAAGCGCGGGCGTCGCGTATGGCG
GAAGAAGATTAAGTACGACTGCCGGAAGAAGCTTGCGGATAACCGCCCTC
GCGTCAAAGGCCGCTTTGTCCGCCGCGACGAAGAGATCGATATTATTGTC
GGGGGGGCTGTTGCCGCGGCAGAGGCGGCCGCGGCTGACGGCGTAGCGGA
TGGGGGCTCATCGGCTTTGCTTACTCAGTTGATGGATCTGGACGAGCTTC
TCGAGGACTAG
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protein sequence of NO14G01530.1

>NO14G01530.1-protein ID=NO14G01530.1-protein|Name=NO14G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=487bp
MSTLSMQAAPSLGHPMEKLLDNYMMAERGGGAEEGGAGATFMVEDGGMIS
YTGVFMDDDEDLDDDASASSTEAEVMAHLHAALGGSVSSTKASGSNSSSS
SSGSTSTSGGTVSAAPEGDKGEGWKMALLEGLEDFLKVEGAVPAGAAGSG
GSRRFSFDLSNLDMQTLEQLAAGATSGLSSRRGSFSLTMLEAEGLMAKGS
LPVGTAAPFPSSGPRGNGNGSGLPLGNMRVKQEMPVDTASRSNSVSSLGT
TASNSTSASSTDISDPVSNRSMSGATTTSKNKAVKKETSITTSASQATSK
SQPKKGGSSPTGAVTGGTSSLRTTSSGLISAASLLPTPQTPHKAILTPSM
PTTTSTTSSSNGCTNATMVNSPNGNGGTLVLPIIPKDGIARIGIYTLEER
KVRVARFQAKRGRRVWRKKIKYDCRKKLADNRPRVKGRFVRRDEEIDIIV
GGAVAAAEAAAADGVADGGSSALLTQLMDLDELLED*
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mRNA from alignment at chr14:480933..482733-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01530.1 ID=NO14G01530.1|Name=NO14G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1801bp|location=Sequence derived from alignment at chr14:480933..482733- (Nannochloropsis oceanica)
ATGAGTACCTTGAGCATGCAAGCGGCCCCCTCGCTGGGCCACCCCATGGA
GAAACTACTGGACAACTACATGATGGCCGAGCGCGGGGGAGGAGCCGAGG
AGGGGGGAGCAGGTGCGACCTTCATGGTGGAAGATGGGGGCATGATTTCT
TACACGGGTGTCTTTATGGACGACGATGAGGATTTAGATGACGACGCCAG
CGCCTCGTCGACTGAAGCCGAAGTCATGGCCCACCTACACGCCGCCTTGG
GGGGCAGCGTCTCCAGCACCAAAGCGAGCGGCAGCAACAGCAGCTCGTCG
AGCTCCGGGAGCACCAGCACGAGCGGTGGCACCGTCAGCGCGGCGCCGGA
AGGGGACAAAGGAGAAGGATGTAAGTAAGGAGTGTTGATCTTGACAGGGC
CGAGGGGTAGATGGATATTTTTAATAGCACATGTTCTTTCCTTCCGTGTC
TCGTCATGTTGCATCTTTTTCGTCTCACATGGTGGCTTTTTGCATGCTGG
GAAATTGTGCCCGCATAATCCAGCCGTTATTCGTGTGGGTAAATCAGTTG
TCGCGTCTCCCTAGTCACGATATTCTGTGAAGTGATATCTGGAATGACGG
TTTAACAAAGGGGGCGCCGCTGAGGGGTGGGACAAATGCAAGGAAGCCAC
ATGTATAGCTTCACCCATTTATCTATCCAGAACTTATTTCCCCACTCCCT
TTCGTCACAGGGAAAATGGCCCTGCTGGAAGGTTTGGAAGACTTTTTGAA
AGTTGAAGGCGCTGTGCCGGCGGGCGCTGCCGGGAGTGGGGGCAGCCGCC
GTTTTTCGTTTGACCTGTCCAACCTAGACATGCAGACCCTGGAGCAGCTG
GCGGCTGGCGCCACCTCGGGCCTGTCCTCGCGCCGAGGCTCTTTTAGCTT
GACGATGCTGGAGGCGGAGGGACTGATGGCCAAGGGCTCTCTTCCTGTCG
GCACTGCGGCCCCATTTCCAAGCAGCGGCCCACGCGGCAACGGCAACGGC
AGTGGCTTGCCTTTGGGCAACATGCGGGTCAAGCAGGAAATGCCTGTGGA
TACAGCGAGCAGGAGCAATAGCGTATCTTCTCTGGGCACCACCGCTAGCA
ATAGCACCAGTGCTAGCAGCACCGACATCAGCGATCCCGTCAGCAACCGC
AGCATGAGTGGCGCCACCACCACCAGCAAAAACAAGGCCGTCAAGAAGGA
GACGTCCATCACTACCAGCGCCTCGCAGGCCACATCCAAGTCTCAGCCTA
AGAAGGGAGGATCTTCTCCGACGGGCGCAGTCACCGGTGGCACCAGCAGC
CTCAGGACAACGTCCAGCGGGCTCATCTCCGCGGCCTCCCTCCTGCCCAC
GCCACAGACGCCGCATAAGGCTATCTTGACCCCAAGTATGCCGACAACCA
CCAGCACCACCAGCAGCAGCAATGGTTGCACTAACGCGACTATGGTCAAC
AGTCCGAACGGGAATGGGGGCACGCTAGTGCTGCCGATCATCCCCAAGGA
CGGCATCGCGCGCATCGGTATCTACACGCTGGAGGAGCGGAAGGTGCGCG
TAGCCCGTTTCCAGGCGAAGCGCGGGCGTCGCGTATGGCGGAAGAAGATT
AAGTACGACTGCCGGAAGAAGCTTGCGGATAACCGCCCTCGCGTCAAAGG
CCGCTTTGTCCGCCGCGACGAAGAGATCGATATTATTGTCGGGGGGGCTG
TTGCCGCGGCAGAGGCGGCCGCGGCTGACGGCGTAGCGGATGGGGGCTCA
TCGGCTTTGCTTACTCAGTTGATGGATCTGGACGAGCTTCTCGAGGACTA
G
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Coding sequence (CDS) from alignment at chr14:480933..482733-

>NO14G01530.1 ID=NO14G01530.1|Name=NO14G01530.1|organism=Nannochloropsis oceanica|type=CDS|length=1461bp|location=Sequence derived from alignment at chr14:480933..482733- (Nannochloropsis oceanica)
ATGAGTACCTTGAGCATGCAAGCGGCCCCCTCGCTGGGCCACCCCATGGA
GAAACTACTGGACAACTACATGATGGCCGAGCGCGGGGGAGGAGCCGAGG
AGGGGGGAGCAGGTGCGACCTTCATGGTGGAAGATGGGGGCATGATTTCT
TACACGGGTGTCTTTATGGACGACGATGAGGATTTAGATGACGACGCCAG
CGCCTCGTCGACTGAAGCCGAAGTCATGGCCCACCTACACGCCGCCTTGG
GGGGCAGCGTCTCCAGCACCAAAGCGAGCGGCAGCAACAGCAGCTCGTCG
AGCTCCGGGAGCACCAGCACGAGCGGTGGCACCGTCAGCGCGGCGCCGGA
AGGGGACAAAGGAGAAGGATGGAAAATGGCCCTGCTGGAAGGTTTGGAAG
ACTTTTTGAAAGTTGAAGGCGCTGTGCCGGCGGGCGCTGCCGGGAGTGGG
GGCAGCCGCCGTTTTTCGTTTGACCTGTCCAACCTAGACATGCAGACCCT
GGAGCAGCTGGCGGCTGGCGCCACCTCGGGCCTGTCCTCGCGCCGAGGCT
CTTTTAGCTTGACGATGCTGGAGGCGGAGGGACTGATGGCCAAGGGCTCT
CTTCCTGTCGGCACTGCGGCCCCATTTCCAAGCAGCGGCCCACGCGGCAA
CGGCAACGGCAGTGGCTTGCCTTTGGGCAACATGCGGGTCAAGCAGGAAA
TGCCTGTGGATACAGCGAGCAGGAGCAATAGCGTATCTTCTCTGGGCACC
ACCGCTAGCAATAGCACCAGTGCTAGCAGCACCGACATCAGCGATCCCGT
CAGCAACCGCAGCATGAGTGGCGCCACCACCACCAGCAAAAACAAGGCCG
TCAAGAAGGAGACGTCCATCACTACCAGCGCCTCGCAGGCCACATCCAAG
TCTCAGCCTAAGAAGGGAGGATCTTCTCCGACGGGCGCAGTCACCGGTGG
CACCAGCAGCCTCAGGACAACGTCCAGCGGGCTCATCTCCGCGGCCTCCC
TCCTGCCCACGCCACAGACGCCGCATAAGGCTATCTTGACCCCAAGTATG
CCGACAACCACCAGCACCACCAGCAGCAGCAATGGTTGCACTAACGCGAC
TATGGTCAACAGTCCGAACGGGAATGGGGGCACGCTAGTGCTGCCGATCA
TCCCCAAGGACGGCATCGCGCGCATCGGTATCTACACGCTGGAGGAGCGG
AAGGTGCGCGTAGCCCGTTTCCAGGCGAAGCGCGGGCGTCGCGTATGGCG
GAAGAAGATTAAGTACGACTGCCGGAAGAAGCTTGCGGATAACCGCCCTC
GCGTCAAAGGCCGCTTTGTCCGCCGCGACGAAGAGATCGATATTATTGTC
GGGGGGGCTGTTGCCGCGGCAGAGGCGGCCGCGGCTGACGGCGTAGCGGA
TGGGGGCTCATCGGCTTTGCTTACTCAGTTGATGGATCTGGACGAGCTTC
TCGAGGACTAG
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Synonyms
Publications