NO14G01340.1, NO14G01340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G01340.1
Unique NameNO14G01340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2289
Alignment locationchr14:432543..434932 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:432543..434932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G01340.1 vs.
Match: OVA02371.1 (Donson [Macleaya cordata])

HSP 1 Score: 75.1 bits (183), Expect = 1.100e-9
Identity = 97/402 (24.13%), Postives = 145/402 (36.07%), Query Frame = 0 
Query:  205 LGNSAPAGGPSMDDSNFIARLGSLAGMRLELQDSSPERHTHGDGVNEMVPASPF-NEGYGTRRRLPHDFSLKSSLCFESAQPFNWCRPIPGSAEAKGMLRHLRESIDPPSPPSPQPQEDDGSAVPCARPPASFDEALEIWVAASLSYAHPAEPLAASMHLPLQMTRQPDPALMLYKRLRQWEEAFRHLYTLYRHDPSLTFYSQAPDFTVVWTREEDGGGGRDEVGDGMEYDGVKEERGKGGTKEVSQLKVVISHSRRWLRARLREADIPFSVPLAPDAEARDNEEATLPHITVMAGGGNSDRIPRGKVGAEEELQELLSSVTGQMAGGMGMVEMQSRRRPKHLNDLPRQRSQLVLKGHEAVHGLFNFLLNLENGLGPSSVADVPRLLADRPFMHGSMQRLQV 606
            LGN   +G P++D +     L  L          SP            V +  F +E   +  + P D +LK+++   S+   NWC  +   +   G  + + +           P   D S +  A     F +AL  WV        P   L  S+   L +T        L  R   WE++FR LY + R      FY     F V++T    GG                        K        IS S R LR+ LRE DI FS+PL       + E+AT   +                     EL E+     GQ      M ++ +             +S L   G+E+VHGL++FLLN  + L   +  DVP + +  PF + S+   +V
Sbjct:  178 LGNEKSSGQPTLDMNTV---LKGLRTREAPTTSQSPADSLEQRSDLPFVHSGRFPSEFQISGHKTPIDLTLKTTMWLVSSSSVNWCHRLTTRSTFYGTAQFMSQF----GCSGNNPSHCDTSGLTSAE--VLFSKALHSWV-------FPQSTLPPSVISALNLTSSHGELDFLLNRQLAWEDSFRGLYYMLRKSMCDIFYVCTSQFVVMFTGGHSGG------------------------KTKRSCNAYISQSTRGLRSLLREQDICFSMPLCHS----EVEQATTEDLV--------------------ELSEIGKCNLGQTRCLSSMSDVDNN-----------PQSLLEFSGNESVHGLYDFLLNYRSFLSSLNGVDVPVIYSPVPFQNASLSAPEV 504
The following BLAST results are available for this feature:
BLAST of NO14G01340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OVA02371.11.100e-924.13Donson [Macleaya cordata][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G01340NO14G01340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G01340.1NO14G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G01340.1.cds1NO14G01340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO14G01340.1.cds2NO14G01340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G01340.1 ID=NO14G01340.1|Name=NO14G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2289bp
ATGGATCTCTCTGTGGCCGCCCCGCTGCCCGATTCTGGAACTACCATTTC
CTCCACCGTCGTTAAACAAAGCAGCACGCGGCGCGCGGTTCTTGGGGACA
AGGAGAACACAAGCACCACGCATAAGCTGGAGACCTCTGCCACAAACACG
CTCTTGAGCACCAGTATCGCCGGAGGAACCGCACTGTCCTTGAAGCCAGG
CTTTCTCTCCAAGCGACGGGCCTTAGTGCGGTCGAGCAGCACGCCCCCTG
CCTCATCATCTGCCTCCCACAAGGGGTCCCTCGGCCACTCCTTCAAAGCA
GCGGCTGCCACGGCGGCTTTGTCCGTCGTGTCGTTCGGTGGCAAGCACAA
CACCAACAGGCAGCGAGTCTGCCGGCCTATCCAAGACGGGAATGGCGAGT
TTGATGTAGGGCCGTCATCGCACGAAAACGAAGATGTCTCGCCAACAGCA
TCAGCAGCAGCAACCTTGCCCCGTCCAGCGTTTTACCCCGGGCTTAAGCC
CACAAGGGAAGCAAATTCTGCCGCAACGGCTTCATCCGTGAAAATGACGG
GTGGTGGCAGTGGTGGTGGTGGTATGGGGCTGGGCAGTGCCCTTTTTGGT
GGGTTTGGACTGTTGGGCAACTCTGCTCCTGCCGGGGGCCCGAGCATGGA
CGATAGCAACTTCATAGCCCGCCTCGGCAGCCTGGCCGGCATGCGGTTGG
AGCTTCAAGACTCAAGCCCAGAGCGTCACACACATGGTGATGGGGTTAAT
GAGATGGTCCCTGCTTCTCCTTTTAACGAAGGGTACGGCACCCGCCGTCG
CCTTCCCCACGACTTTTCGCTCAAGTCCAGCCTATGCTTCGAATCCGCCC
AGCCATTCAATTGGTGTCGGCCCATTCCTGGTTCTGCGGAAGCCAAGGGC
ATGCTCCGCCACCTTCGAGAGAGCATTGATCCCCCCTCTCCCCCCTCTCC
TCAGCCGCAAGAAGACGATGGTTCAGCTGTTCCCTGTGCCAGGCCTCCTG
CTTCTTTCGATGAGGCGCTCGAGATATGGGTTGCTGCTTCTTTATCCTAT
GCCCATCCTGCCGAACCTCTAGCGGCATCCATGCATTTGCCATTACAAAT
GACGCGACAGCCAGATCCGGCGTTGATGCTGTATAAGAGATTAAGGCAGT
GGGAGGAGGCCTTTAGACACTTGTACACTCTTTACAGGCATGATCCTTCG
CTCACATTTTATTCGCAAGCCCCGGACTTCACGGTAGTTTGGACGAGGGA
GGAGGATGGGGGGGGCGGGAGGGACGAAGTTGGGGATGGCATGGAGTATG
ATGGTGTTAAAGAGGAGAGGGGAAAAGGAGGGACGAAGGAAGTGTCGCAG
CTGAAGGTGGTTATTTCGCATTCCAGACGCTGGCTGCGGGCACGGCTTCG
TGAGGCGGATATCCCTTTTTCTGTCCCCCTAGCGCCGGACGCCGAGGCTC
GTGACAACGAAGAGGCAACCCTCCCACATATCACTGTTATGGCCGGTGGT
GGTAATAGTGACAGGATACCGAGAGGCAAGGTAGGAGCGGAGGAAGAGTT
GCAAGAACTGTTGTCATCCGTGACGGGCCAGATGGCTGGAGGGATGGGGA
TGGTGGAGATGCAGAGCCGACGTCGACCCAAGCACCTGAATGACTTACCT
CGGCAACGATCACAGTTGGTGCTCAAGGGGCATGAGGCTGTACATGGCTT
GTTTAATTTCTTGCTGAATTTGGAGAATGGCTTGGGTCCCAGTTCTGTTG
CGGATGTCCCTCGTTTGTTGGCAGATCGGCCTTTTATGCATGGGAGCATG
CAAAGGCTACAGGTGGCGTTCAATGGACAGGTGCAACGGACGCTGCTCCA
GGGAAGTGGTGGCGATGCGAGGGGAAAGCGTGGGAGGTATTTTGCGGATG
AGGGGGAGGAGGATGAGGGGGAGGAGAAAGGGATGGGGGGGATGGAGACT
GTGTATCAGCTTAAGTTGTGTGGTCCGGTGTTGCCTGGGCAGCTTAGGCG
GTTGGCGGGGGTGGTGCATTTTTTGCAGCAGGATCGAAAAGGGAAGGAAG
TAGGGGTGGGGAAGAATAGGTGGAAGAAGCAGAAGACATCGGGGTCGGGA
GGGGATTGGAGCTTGGTAATGGAGCCGTTGAATGGAACCGAGGCGTTTAA
CTTGCAGGAGGGAGGGAGGGAGGGAGAGGTAGGGGGAGGAGGAAGGGGAG
GAGAATTGGGTCGGACGCGAATGCGGAGTTTGAAGGAGGTGAGGTGGAGC
GCGGAGAAGGAAATGTTTGCTGTTATTACCACATGTTAG
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protein sequence of NO14G01340.1

>NO14G01340.1-protein ID=NO14G01340.1-protein|Name=NO14G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=763bp
MDLSVAAPLPDSGTTISSTVVKQSSTRRAVLGDKENTSTTHKLETSATNT
LLSTSIAGGTALSLKPGFLSKRRALVRSSSTPPASSSASHKGSLGHSFKA
AAATAALSVVSFGGKHNTNRQRVCRPIQDGNGEFDVGPSSHENEDVSPTA
SAAATLPRPAFYPGLKPTREANSAATASSVKMTGGGSGGGGMGLGSALFG
GFGLLGNSAPAGGPSMDDSNFIARLGSLAGMRLELQDSSPERHTHGDGVN
EMVPASPFNEGYGTRRRLPHDFSLKSSLCFESAQPFNWCRPIPGSAEAKG
MLRHLRESIDPPSPPSPQPQEDDGSAVPCARPPASFDEALEIWVAASLSY
AHPAEPLAASMHLPLQMTRQPDPALMLYKRLRQWEEAFRHLYTLYRHDPS
LTFYSQAPDFTVVWTREEDGGGGRDEVGDGMEYDGVKEERGKGGTKEVSQ
LKVVISHSRRWLRARLREADIPFSVPLAPDAEARDNEEATLPHITVMAGG
GNSDRIPRGKVGAEEELQELLSSVTGQMAGGMGMVEMQSRRRPKHLNDLP
RQRSQLVLKGHEAVHGLFNFLLNLENGLGPSSVADVPRLLADRPFMHGSM
QRLQVAFNGQVQRTLLQGSGGDARGKRGRYFADEGEEDEGEEKGMGGMET
VYQLKLCGPVLPGQLRRLAGVVHFLQQDRKGKEVGVGKNRWKKQKTSGSG
GDWSLVMEPLNGTEAFNLQEGGREGEVGGGGRGGELGRTRMRSLKEVRWS
AEKEMFAVITTC*
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mRNA from alignment at chr14:432543..434932+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G01340.1 ID=NO14G01340.1|Name=NO14G01340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2390bp|location=Sequence derived from alignment at chr14:432543..434932+ (Nannochloropsis oceanica)
ATGGATCTCTCTGTGGCCGCCCCGCTGCCCGATTCTGGAACTACCATTTC
CTCCACCGTCGTTAAACAAAGCAGCACGCGGCGCGCGGTTCTTGGGGACA
AGGAGAACACAAGCACCACGCATAAGCTGGAGACCTCTGCCACAAACACG
CTCTTGAGCACCAGTATCGCCGGAGGAACCGCACTGTCCTTGAAGCCAGG
CTTTCTCTCCAAGCGACGGGCCTTAGTGCGGTCGAGCAGCACGCCCCCTG
CCTCATCATCTGCCTCCCACAAGGGGTCCCTCGGCCACTCCTTCAAAGCA
GCGGCTGCCACGGCGGCTTTGTCCGTCGTGTCGTTCGGTGGCAAGCACAA
CACCAACAGGCAGCGAGTCTGCCGGCCTATCCAAGACGGGAATGGCGAGT
TTGATGTAGGGCCGTCATCGCACGAAAACGAAGATGTCTCGCCAACAGCA
TCAGCAGCAGCAACCTTGCCCCGTCCAGCGTTTTACCCCGGGCTTAAGCC
CACAAGGGAAGCAAATTCTGCCGCAACGGCTTCATCCGTGAAAATGACGG
GTGGTGGCAGTGGTGGTGGTGGTATGGGGCTGGGCAGTGCCCTTTTTGGT
GGGTTTGGACTGTTGGGCAACTCTGCTCCTGCCGGGGGCCCGAGCATGGA
CGATAGCAACTTCATAGCCCGCCTCGGCAGCCTGGCCGGCATGCGGTTGG
AGCTTCAAGACTCAAGCCCAGAGCGTCACACACATGGTGATGGGGTTAAT
GAGATGGTCCCTGCTTCTCCTTTTAACGAAGGGTACGGCACCCGCCGTCG
CCTTCCCCACGACTTTTCGCTCAAGTCCAGCCTATGCTTCGAATCCGCCC
AGCCATTCAATTGGTGTCGGCCCATTCCTGGTTCTGCGGAAGCCAAGGGC
ATGCTCCGCCACCTTCGAGAGAGCATTGATCCCCCCTCTCCCCCCTCTCC
TCAGCCGCAAGAAGACGATGGTTCAGCTGTTCCCTGTGCCAGGCCTCCTG
CTTCTTTCGATGAGGCGCTCGAGATATGGGTTGCTGCTTCTTTATCCTAT
GCCCATCCTGCCGAACCTCTAGCGGCATCCATGCATTTGCCATTACAAAT
GGTGCGGAAAACGATGGAAAACGCTTTTGCTCGTGATCCTGCCCCGGTGG
TAGGGGTGGATGAGGGAGCGAATGGGGGAGGGGGGGAGGGAACAACAAGC
AGACGCGACAGCCAGATCCGGCGTTGATGCTGTATAAGAGATTAAGGCAG
TGGGAGGAGGCCTTTAGACACTTGTACACTCTTTACAGGCATGATCCTTC
GCTCACATTTTATTCGCAAGCCCCGGACTTCACGGTAGTTTGGACGAGGG
AGGAGGATGGGGGGGGCGGGAGGGACGAAGTTGGGGATGGCATGGAGTAT
GATGGTGTTAAAGAGGAGAGGGGAAAAGGAGGGACGAAGGAAGTGTCGCA
GCTGAAGGTGGTTATTTCGCATTCCAGACGCTGGCTGCGGGCACGGCTTC
GTGAGGCGGATATCCCTTTTTCTGTCCCCCTAGCGCCGGACGCCGAGGCT
CGTGACAACGAAGAGGCAACCCTCCCACATATCACTGTTATGGCCGGTGG
TGGTAATAGTGACAGGATACCGAGAGGCAAGGTAGGAGCGGAGGAAGAGT
TGCAAGAACTGTTGTCATCCGTGACGGGCCAGATGGCTGGAGGGATGGGG
ATGGTGGAGATGCAGAGCCGACGTCGACCCAAGCACCTGAATGACTTACC
TCGGCAACGATCACAGTTGGTGCTCAAGGGGCATGAGGCTGTACATGGCT
TGTTTAATTTCTTGCTGAATTTGGAGAATGGCTTGGGTCCCAGTTCTGTT
GCGGATGTCCCTCGTTTGTTGGCAGATCGGCCTTTTATGCATGGGAGCAT
GCAAAGGCTACAGGTGGCGTTCAATGGACAGGTGCAACGGACGCTGCTCC
AGGGAAGTGGTGGCGATGCGAGGGGAAAGCGTGGGAGGTATTTTGCGGAT
GAGGGGGAGGAGGATGAGGGGGAGGAGAAAGGGATGGGGGGGATGGAGAC
TGTGTATCAGCTTAAGTTGTGTGGTCCGGTGTTGCCTGGGCAGCTTAGGC
GGTTGGCGGGGGTGGTGCATTTTTTGCAGCAGGATCGAAAAGGGAAGGAA
GTAGGGGTGGGGAAGAATAGGTGGAAGAAGCAGAAGACATCGGGGTCGGG
AGGGGATTGGAGCTTGGTAATGGAGCCGTTGAATGGAACCGAGGCGTTTA
ACTTGCAGGAGGGAGGGAGGGAGGGAGAGGTAGGGGGAGGAGGAAGGGGA
GGAGAATTGGGTCGGACGCGAATGCGGAGTTTGAAGGAGGTGAGGTGGAG
CGCGGAGAAGGAAATGTTTGCTGTTATTACCACATGTTAG
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Coding sequence (CDS) from alignment at chr14:432543..434932+

>NO14G01340.1 ID=NO14G01340.1|Name=NO14G01340.1|organism=Nannochloropsis oceanica|type=CDS|length=2289bp|location=Sequence derived from alignment at chr14:432543..434932+ (Nannochloropsis oceanica)
ATGGATCTCTCTGTGGCCGCCCCGCTGCCCGATTCTGGAACTACCATTTC
CTCCACCGTCGTTAAACAAAGCAGCACGCGGCGCGCGGTTCTTGGGGACA
AGGAGAACACAAGCACCACGCATAAGCTGGAGACCTCTGCCACAAACACG
CTCTTGAGCACCAGTATCGCCGGAGGAACCGCACTGTCCTTGAAGCCAGG
CTTTCTCTCCAAGCGACGGGCCTTAGTGCGGTCGAGCAGCACGCCCCCTG
CCTCATCATCTGCCTCCCACAAGGGGTCCCTCGGCCACTCCTTCAAAGCA
GCGGCTGCCACGGCGGCTTTGTCCGTCGTGTCGTTCGGTGGCAAGCACAA
CACCAACAGGCAGCGAGTCTGCCGGCCTATCCAAGACGGGAATGGCGAGT
TTGATGTAGGGCCGTCATCGCACGAAAACGAAGATGTCTCGCCAACAGCA
TCAGCAGCAGCAACCTTGCCCCGTCCAGCGTTTTACCCCGGGCTTAAGCC
CACAAGGGAAGCAAATTCTGCCGCAACGGCTTCATCCGTGAAAATGACGG
GTGGTGGCAGTGGTGGTGGTGGTATGGGGCTGGGCAGTGCCCTTTTTGGT
GGGTTTGGACTGTTGGGCAACTCTGCTCCTGCCGGGGGCCCGAGCATGGA
CGATAGCAACTTCATAGCCCGCCTCGGCAGCCTGGCCGGCATGCGGTTGG
AGCTTCAAGACTCAAGCCCAGAGCGTCACACACATGGTGATGGGGTTAAT
GAGATGGTCCCTGCTTCTCCTTTTAACGAAGGGTACGGCACCCGCCGTCG
CCTTCCCCACGACTTTTCGCTCAAGTCCAGCCTATGCTTCGAATCCGCCC
AGCCATTCAATTGGTGTCGGCCCATTCCTGGTTCTGCGGAAGCCAAGGGC
ATGCTCCGCCACCTTCGAGAGAGCATTGATCCCCCCTCTCCCCCCTCTCC
TCAGCCGCAAGAAGACGATGGTTCAGCTGTTCCCTGTGCCAGGCCTCCTG
CTTCTTTCGATGAGGCGCTCGAGATATGGGTTGCTGCTTCTTTATCCTAT
GCCCATCCTGCCGAACCTCTAGCGGCATCCATGCATTTGCCATTACAAAT
GACGCGACAGCCAGATCCGGCGTTGATGCTGTATAAGAGATTAAGGCAGT
GGGAGGAGGCCTTTAGACACTTGTACACTCTTTACAGGCATGATCCTTCG
CTCACATTTTATTCGCAAGCCCCGGACTTCACGGTAGTTTGGACGAGGGA
GGAGGATGGGGGGGGCGGGAGGGACGAAGTTGGGGATGGCATGGAGTATG
ATGGTGTTAAAGAGGAGAGGGGAAAAGGAGGGACGAAGGAAGTGTCGCAG
CTGAAGGTGGTTATTTCGCATTCCAGACGCTGGCTGCGGGCACGGCTTCG
TGAGGCGGATATCCCTTTTTCTGTCCCCCTAGCGCCGGACGCCGAGGCTC
GTGACAACGAAGAGGCAACCCTCCCACATATCACTGTTATGGCCGGTGGT
GGTAATAGTGACAGGATACCGAGAGGCAAGGTAGGAGCGGAGGAAGAGTT
GCAAGAACTGTTGTCATCCGTGACGGGCCAGATGGCTGGAGGGATGGGGA
TGGTGGAGATGCAGAGCCGACGTCGACCCAAGCACCTGAATGACTTACCT
CGGCAACGATCACAGTTGGTGCTCAAGGGGCATGAGGCTGTACATGGCTT
GTTTAATTTCTTGCTGAATTTGGAGAATGGCTTGGGTCCCAGTTCTGTTG
CGGATGTCCCTCGTTTGTTGGCAGATCGGCCTTTTATGCATGGGAGCATG
CAAAGGCTACAGGTGGCGTTCAATGGACAGGTGCAACGGACGCTGCTCCA
GGGAAGTGGTGGCGATGCGAGGGGAAAGCGTGGGAGGTATTTTGCGGATG
AGGGGGAGGAGGATGAGGGGGAGGAGAAAGGGATGGGGGGGATGGAGACT
GTGTATCAGCTTAAGTTGTGTGGTCCGGTGTTGCCTGGGCAGCTTAGGCG
GTTGGCGGGGGTGGTGCATTTTTTGCAGCAGGATCGAAAAGGGAAGGAAG
TAGGGGTGGGGAAGAATAGGTGGAAGAAGCAGAAGACATCGGGGTCGGGA
GGGGATTGGAGCTTGGTAATGGAGCCGTTGAATGGAACCGAGGCGTTTAA
CTTGCAGGAGGGAGGGAGGGAGGGAGAGGTAGGGGGAGGAGGAAGGGGAG
GAGAATTGGGTCGGACGCGAATGCGGAGTTTGAAGGAGGTGAGGTGGAGC
GCGGAGAAGGAAATGTTTGCTGTTATTACCACATGTTAG
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Synonyms
Publications