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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:404552..407163 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G01250.1 vs.
Match: EWM24673.1 (hypothetical protein Naga_100123g17 [Nannochloropsis gaditana]) HSP 1 Score: 910.6 bits (2352), Expect = 2.500e-261 Identity = 440/507 (86.79%), Postives = 480/507 (94.67%), Query Frame = 0
Query: 69 KGGRGSTFGNKGAWAAAVAAVDPAEGTKVEKEKSWRQKYTKYIVRQVQLGLNSPKNAVSIAQGGLDYCYKNFEFIRDGKTYKLGEALEKFGGSHAFETGVIEGDGKLPKFGPECQVPYGKKVLKGEALKAQLDKWASYGTIEPSARDAITYLVDNPKVLDLSDKYFVLLGAGSAMGPLLTLLSLGANIIAIDLDRQGIWERLIRETRNSPGTLIFPLKKKQSTLKSDAEIAAQAGGNLFTDTPEIRAWLMGVERGKDLVVGAYAYLDGELHVKVSLAMDAIIRDLTKMRKATPAYLCTPTDVHVITKEAHDAAAKEYKKINFTNVVSRLSPFALPGTGYLVKNALDPVKAEDGEELYLVDGIVGRQGPNYALAKRIQHWRAVVAREVDKVNVSSNIAPSTATVSVTSNKLFALAYKGFHFFAPLEVFQQETSNAVMAAMLIHDIRNPKVPSNPKNKLRNPLELFTYGSLHGGVWRMAYKIDSIGEPAAFLYLFTTPLGMMIVVAFWA 576
K GSTFGNKGAWAAAV AVD AEG K+EKEK WRQKY KYIVRQVQ+GL SPKNAVS+AQGGL+YCY+NFEFIRDGKTYKLGEA+EKFGGSH++ETGVI+G+GKLPKFGP CQVPYGKKVL+GEAL+AQ ++WA YGT+EPSARDAI+YL+DNPKVLDLSDKYFVLLGAGSAMGP LTLL+LGANIIAIDLDRQGIWERLIRETR SPGTLIFPLKKKQSTLK+D E+AAQAGGNLFTDTPE+RAWLMGVE GKDLVVGAYAYLDGELHVKVSLAMDAIIRDLT++RKATPAYLCTPTDVHVI+KEAHDAAA ++ +++ N+V +LS F LPG+GYLVKNAL PV+AEDGEE+Y VDGIVGRQGPNYALAKRIQHWRAVVAREVDKVNVSSNIAPSTATVSVTSNKLFALAYKGFHFF PLEVFQQETSNAVMAAMLIHDIRNP VPSNPKNK+RNPLELFTYGSLHGG+WRMAYKIDSIGEPAAFLYLFTTPLGM+++VAF+A
Sbjct: 57 KRAAGSTFGNKGAWAAAVGAVDKAEGLKIEKEKQWRQKYAKYIVRQVQVGLKSPKNAVSVAQGGLEYCYQNFEFIRDGKTYKLGEAMEKFGGSHSYETGVIKGEGKLPKFGPVCQVPYGKKVLEGEALRAQFEQWARYGTVEPSARDAISYLIDNPKVLDLSDKYFVLLGAGSAMGPFLTLLALGANIIAIDLDRQGIWERLIRETRKSPGTLIFPLKKKQSTLKTDPEVAAQAGGNLFTDTPELRAWLMGVETGKDLVVGAYAYLDGELHVKVSLAMDAIIRDLTRLRKATPAYLCTPTDVHVISKEAHDAAAAQHCELSLVNLVCKLSLFNLPGSGYLVKNALPPVRAEDGEEIYFVDGIVGRQGPNYALAKRIQHWRAVVAREVDKVNVSSNIAPSTATVSVTSNKLFALAYKGFHFFKPLEVFQQETSNAVMAAMLIHDIRNPNVPSNPKNKIRNPLELFTYGSLHGGIWRMAYKIDSIGEPAAFLYLFTTPLGMLVLVAFYA 563
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G01250.1 ID=NO14G01250.1|Name=NO14G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2411bp GTGGAGATGCTGAGGATGAGGAGGAATCAGACGTGCGAAGAAATCCGTCT TGCATGTAACCAGTGTGCTACTTATCTGTCGAACCCCAAAATTTTCAGTC CCGCGCAAGACGTGCAACAGAATGTCTCTGGGCAAGTATGTTGTCGATTG TGTCGGTTGCTAATTTCCCCCCCTTCACTCGCTCACTCCCTCTTCTTTCG TTCCTTCCCCTCCCCGACAGGAGGCAGCGGGACACAGCTCCTTACCACAC TTACACCTCTCCACACTCCGTCATCTTAAGAATGGGCAAGCCTCAGCGAC CCAAGGGACCGGAGGTGGGCCTCGTCTTCCCTACGGACAAGAAGGGTGGC CGTGGCTCCACGTTCGGCAACAAAGGCGCTTGGGCCGCAGCCGTCGCGGC TGTCGACCCCGCGGAGGGCACAAAGGTGGAGAAGGAAAAAAGCTGGCGCC AGAAATATACCAAGTACATCGTTCGTCAAGTGCAACTCGGACTTAATTCC CCCAAGAACGCTGTCAGCATCGCGCAGGGCGGCCTGGACTACTGCTACAA AAACTTTGAATTCATCCGAGATGGAAAGACCTACAAGCTGGGGGAGGCGC TGGAGAAATTTGGGGGGTCGCATGCCTTTGAAACGGGGGTGATTGAAGGG GACGGGAAGCTGCCCAAGTTTGGCCCGGAGTGCCAGGTGCCATACGGGAA GAAGGTCTTGAAGGGGGAGGCGTTGAAGGCGCAGTTGGACAAATGGGCGA GCTACGGGACCATCGAGCCGTCAGCCAGGGACGCAATCACGTACTTGGTG GACAACCCCAAGGTGCTGGATCTGTCGGACAAATACTTTGTCTTGCTGGG GGCGGGGTCGGCCATGGGGCCCCTCCTCACTCTCCTCTCCCTAGGTGCGA ACATAATTGCGATTGATCTGGACAGGCAAGGTATTTGGGAGAGGCTGATC CGAGAGACTCGAAACTCGCCGGGGACGTTGATTTTCCCGCTGAAGAAGAA GCAGTCGACCTTGAAAAGCGATGCGGAGATTGCGGCCCAAGCGGGAGGGA ACTTGTTCACAGACACCCCGGAGATTCGTGCGTGGCTGATGGGGGTGGAG AGGGGAAAGGATCTGGTGGTGGGGGCGTATGCCTACCTAGACGGGGAGTT GCACGTGAAGGTGTCTCTGGCCATGGACGCAATTATCCGGGATTTGACCA AGATGAGGAAGGCCACGCCCGCTTACCTCTGCACACCGACTGACGTCCAC GTCATTACCAAGGAGGCCCACGACGCGGCGGCGAAGGAGTACAAGAAGAT TAACTTCACCAATGTCGTCTCGAGGTTGAGCCCTTTTGCTCTGCCTGGTA CCGGGTACCTGGTCAAGAACGCCTTAGACCCTGTCAAGGCAGAGGACGGC GAGGAACTCTACCTTGTCGACGGGATCGTGGGAAGACAAGGACCGAACTA CGCCCTGGCGAAGCGGATTCAGCACTGGCGGGCGGTGGTGGCTCGGGAGG TGGATAAGGTCAATGTGTCCTCCAACATAGCGCCGTCCACGGCCACCGTG TCGGTGACGAGCAACAAGCTATTCGCCTTGGCCTACAAGGGATTCCACTT CTTTGCCCCGCTGGAGGTGTTCCAACAGGAGACGTCCAACGCCGTCATGG CCGCCATGCTGATCCACGATATTCGCAACCCCAAGGTGCCTTCCAACCCC AAGAACAAGCTCCGCAATCCGCTCGAGCTGTTTACGTATGGATCTCTCCA TGGCGGGGTCTGGCGCATGGCTTACAAGATTGACTCGATCGGCGAGCCCG CGGCGTTTTTGTACTTGTTCACCACACCCTTGGGAATGATGATTGTGGTG GCTTTCTGGGCGATAGTATTGGGTATCATCAAGGGATACGCTGGGTTTTA GGGAAAGGCAGGAGGGAGGTAGAGAGGCAAGGAGGGAAGGAGGGAGGGAG AGAGAGGTCTTTGTATGATGTTTTGAGTGAGTCCTTGTTTATCAGTATCG AGTGTGTGAGGCGAGGCACCACATTCTTTTCTCACTTCTTTCCTTTATAG TGCTTTCATTCGGCAGAAAAGAGTGACAGAGTGGAGAGGAAGCATGTACA CCCCCATCAACGAAAAAAAGAGATGGGCAGAGGCGATGTTTGTCTAGCAT TGTATTCTCGATTCGGTTTCCTACTTTCATTTGAGCTCACACACAGCTGC TGCTATCGCATGCAGACAGTGTCGTGCCTAAGAAAAAGGGCGAGGAACAC CCAACACTTACTTACTTTATGTATACCATGGAAAGACAGTAACTCAAAAA AAGGAGCGGGGGAAGAAGAGGTATGTTCGTAGAAAATACAGCCGACGGAG ACAAGGAGCATCAGATGCAGCTTAGAAAAAGCAGGAACATAACACGCTGA GTTCAAAAGGC back to topprotein sequence of NO14G01250.1 >NO14G01250.1-protein ID=NO14G01250.1-protein|Name=NO14G01250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp MLSIVSVANFPPFTRSLPLLSFLPLPDRRQRDTAPYHTYTSPHSVILRMG KPQRPKGPEVGLVFPTDKKGGRGSTFGNKGAWAAAVAAVDPAEGTKVEKE KSWRQKYTKYIVRQVQLGLNSPKNAVSIAQGGLDYCYKNFEFIRDGKTYK LGEALEKFGGSHAFETGVIEGDGKLPKFGPECQVPYGKKVLKGEALKAQL DKWASYGTIEPSARDAITYLVDNPKVLDLSDKYFVLLGAGSAMGPLLTLL SLGANIIAIDLDRQGIWERLIRETRNSPGTLIFPLKKKQSTLKSDAEIAA QAGGNLFTDTPEIRAWLMGVERGKDLVVGAYAYLDGELHVKVSLAMDAII RDLTKMRKATPAYLCTPTDVHVITKEAHDAAAKEYKKINFTNVVSRLSPF ALPGTGYLVKNALDPVKAEDGEELYLVDGIVGRQGPNYALAKRIQHWRAV VAREVDKVNVSSNIAPSTATVSVTSNKLFALAYKGFHFFAPLEVFQQETS NAVMAAMLIHDIRNPKVPSNPKNKLRNPLELFTYGSLHGGVWRMAYKIDS IGEPAAFLYLFTTPLGMMIVVAFWAIVLGIIKGYAGF* back to topmRNA from alignment at chr14:404552..407163+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G01250.1 ID=NO14G01250.1|Name=NO14G01250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2612bp|location=Sequence derived from alignment at chr14:404552..407163+ (Nannochloropsis oceanica) GTGGAGATGCTGAGGATGAGGAGGAATCAGACGTGCGAAGAAATCCGTCT
TGCATGTAACCAGTGTGCTACTTATCTGTCGAACCCCAAAATTTTCAGTC
CCGCGCAAGACGTGCAACAGAATGTCTCTGGGCAAGTATGTTGTCGATTG
TGTCGGTTGCTAATTTCCCCCCCTTCACTCGCTCACTCCCTCTTCTTTCG
TTCCTTCCCCTCCCCGACAGGAGGCAGCGGGACACAGCTCCTTACCACAC
TTACACCTCTCCACACTCCGTCATCTTAAGAATGGGCAAGCCTCAGCGAC
CCAAGGGACCGGAGGTGGGCCTCGTCTTCCCTACGGACAAGAAGGGTGGC
CGGTACGTATAAGGGAACGGGATACAAAGAGGGGAGGGAAGGAGGGAGAG
CTCGAGGATCCTGATTACGCGGTAGGCCCGCTCCCGTGTGCGTGCATGCG
TGCGCATGGTCCTAATGCTGCCGATGGAGGGCATTGGGTCATTGGTCCGC
ACGATGAAAATTGCGGAAGAGTGACCCCTGATTCCTTCATCCCCTAACAA
CAGTGGCTCCACGTTCGGCAACAAAGGCGCTTGGGCCGCAGCCGTCGCGG
CTGTCGACCCCGCGGAGGGCACAAAGGTGGAGAAGGAAAAAAGCTGGCGC
CAGAAATATACCAAGTACATCGTTCGTCAAGTGCAACTCGGACTTAATTC
CCCCAAGAACGCTGTCAGCATCGCGCAGGGCGGCCTGGACTACTGCTACA
AAAACTTTGAATTCATCCGAGATGGAAAGACCTACAAGCTGGGGGAGGCG
CTGGAGAAATTTGGGGGGTCGCATGCCTTTGAAACGGGGGTGATTGAAGG
GGACGGGAAGCTGCCCAAGTTTGGCCCGGAGTGCCAGGTGCCATACGGGA
AGAAGGTCTTGAAGGGGGAGGCGTTGAAGGCGCAGTTGGACAAATGGGCG
AGCTACGGGACCATCGAGCCGTCAGCCAGGGACGCAATCACGTACTTGGT
GGACAACCCCAAGGTGCTGGATCTGTCGGACAAATACTTTGTCTTGCTGG
GGGCGGGGTCGGCCATGGGGCCCCTCCTCACTCTCCTCTCCCTAGGTGCG
AACATAATTGCGATTGATCTGGACAGGCAAGGTATTTGGGAGAGGCTGAT
CCGAGAGACTCGAAACTCGCCGGGGACGTTGATTTTCCCGCTGAAGAAGA
AGCAGTCGACCTTGAAAAGCGATGCGGAGATTGCGGCCCAAGCGGGAGGG
AACTTGTTCACAGACACCCCGGAGATTCGTGCGTGGCTGATGGGGGTGGA
GAGGGGAAAGGATCTGGTGGTGGGGGCGTATGCCTACCTAGACGGGGAGT
TGCACGTGAAGGTGTCTCTGGCCATGGACGCAATTATCCGGGATTTGACC
AAGATGAGGAAGGCCACGCCCGCTTACCTCTGCACACCGACTGACGTCCA
CGTCATTACCAAGGAGGCCCACGACGCGGCGGCGAAGGAGTACAAGAAGA
TTAACTTCACCAATGTCGTCTCGAGGTTGAGCCCTTTTGCTCTGCCTGGT
ACCGGGTACCTGGTCAAGAACGCCTTAGACCCTGTCAAGGCAGAGGACGG
CGAGGAACTCTACCTTGTCGACGGGATCGTGGGAAGACAAGGACCGAACT
ACGCCCTGGCGAAGCGGATTCAGCACTGGCGGGCGGTGGTGGCTCGGGAG
GTGGATAAGGTCAATGTGTCCTCCAACATAGCGCCGTCCACGGCCACCGT
GTCGGTGACGAGCAACAAGCTATTCGCCTTGGCCTACAAGGGATTCCACT
TCTTTGCCCCGCTGGAGGTGTTCCAACAGGAGACGTCCAACGCCGTCATG
GCCGCCATGCTGATCCACGATATTCGCAACCCCAAGGTGCCTTCCAACCC
CAAGAACAAGCTCCGCAATCCGCTCGAGCTGTTTACGTATGGATCTCTCC
ATGGCGGGGTCTGGCGCATGGCTTACAAGATTGACTCGATCGGCGAGCCC
GCGGCGTTTTTGTACTTGTTCACCACACCCTTGGGAATGATGATTGTGGT
GGCTTTCTGGGCGATAGTATTGGGTATCATCAAGGGATACGCTGGGTTTT
AGGGAAAGGCAGGAGGGAGGTAGAGAGGCAAGGAGGGAAGGAGGGAGGGA
GAGAGAGGTCTTTGTATGATGTTTTGAGTGAGTCCTTGTTTATCAGTATC
GAGTGTGTGAGGCGAGGCACCACATTCTTTTCTCACTTCTTTCCTTTATA
GTGCTTTCATTCGGCAGAAAAGAGTGACAGAGTGGAGAGGAAGCATGTAC
ACCCCCATCAACGAAAAAAAGAGATGGGCAGAGGCGATGTTTGTCTAGCA
TTGTATTCTCGATTCGGTTTCCTACTTTCATTTGAGCTCACACACAGCTG
CTGCTATCGCATGCAGACAGTGTCGTGCCTAAGAAAAAGGGCGAGGAACA
CCCAACACTTACTTACTTTATGTATACCATGGAAAGACAGTAACTCAAAA
AAAGGAGCGGGGGAAGAAGAGGTATGTTCGTAGAAAATACAGCCGACGGA
GACAAGGAGCATCAGATGCAGCTTAGAAAAAGCAGGAACATAACACGCTG
AGTTCAAAAGGC back to topCoding sequence (CDS) from alignment at chr14:404552..407163+ >NO14G01250.1 ID=NO14G01250.1|Name=NO14G01250.1|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at chr14:404552..407163+ (Nannochloropsis oceanica) ATGTTGTCGATTGTGTCGGTTGCTAATTTCCCCCCCTTCACTCGCTCACT CCCTCTTCTTTCGTTCCTTCCCCTCCCCGACAGGAGGCAGCGGGACACAG CTCCTTACCACACTTACACCTCTCCACACTCCGTCATCTTAAGAATGGGC AAGCCTCAGCGACCCAAGGGACCGGAGGTGGGCCTCGTCTTCCCTACGGA CAAGAAGGGTGGCCGTGGCTCCACGTTCGGCAACAAAGGCGCTTGGGCCG CAGCCGTCGCGGCTGTCGACCCCGCGGAGGGCACAAAGGTGGAGAAGGAA AAAAGCTGGCGCCAGAAATATACCAAGTACATCGTTCGTCAAGTGCAACT CGGACTTAATTCCCCCAAGAACGCTGTCAGCATCGCGCAGGGCGGCCTGG ACTACTGCTACAAAAACTTTGAATTCATCCGAGATGGAAAGACCTACAAG CTGGGGGAGGCGCTGGAGAAATTTGGGGGGTCGCATGCCTTTGAAACGGG GGTGATTGAAGGGGACGGGAAGCTGCCCAAGTTTGGCCCGGAGTGCCAGG TGCCATACGGGAAGAAGGTCTTGAAGGGGGAGGCGTTGAAGGCGCAGTTG GACAAATGGGCGAGCTACGGGACCATCGAGCCGTCAGCCAGGGACGCAAT CACGTACTTGGTGGACAACCCCAAGGTGCTGGATCTGTCGGACAAATACT TTGTCTTGCTGGGGGCGGGGTCGGCCATGGGGCCCCTCCTCACTCTCCTC TCCCTAGGTGCGAACATAATTGCGATTGATCTGGACAGGCAAGGTATTTG GGAGAGGCTGATCCGAGAGACTCGAAACTCGCCGGGGACGTTGATTTTCC CGCTGAAGAAGAAGCAGTCGACCTTGAAAAGCGATGCGGAGATTGCGGCC CAAGCGGGAGGGAACTTGTTCACAGACACCCCGGAGATTCGTGCGTGGCT GATGGGGGTGGAGAGGGGAAAGGATCTGGTGGTGGGGGCGTATGCCTACC TAGACGGGGAGTTGCACGTGAAGGTGTCTCTGGCCATGGACGCAATTATC CGGGATTTGACCAAGATGAGGAAGGCCACGCCCGCTTACCTCTGCACACC GACTGACGTCCACGTCATTACCAAGGAGGCCCACGACGCGGCGGCGAAGG AGTACAAGAAGATTAACTTCACCAATGTCGTCTCGAGGTTGAGCCCTTTT GCTCTGCCTGGTACCGGGTACCTGGTCAAGAACGCCTTAGACCCTGTCAA GGCAGAGGACGGCGAGGAACTCTACCTTGTCGACGGGATCGTGGGAAGAC AAGGACCGAACTACGCCCTGGCGAAGCGGATTCAGCACTGGCGGGCGGTG GTGGCTCGGGAGGTGGATAAGGTCAATGTGTCCTCCAACATAGCGCCGTC CACGGCCACCGTGTCGGTGACGAGCAACAAGCTATTCGCCTTGGCCTACA AGGGATTCCACTTCTTTGCCCCGCTGGAGGTGTTCCAACAGGAGACGTCC AACGCCGTCATGGCCGCCATGCTGATCCACGATATTCGCAACCCCAAGGT GCCTTCCAACCCCAAGAACAAGCTCCGCAATCCGCTCGAGCTGTTTACGT ATGGATCTCTCCATGGCGGGGTCTGGCGCATGGCTTACAAGATTGACTCG ATCGGCGAGCCCGCGGCGTTTTTGTACTTGTTCACCACACCCTTGGGAAT GATGATTGTGGTGGCTTTCTGGGCGATAGTATTGGGTATCATCAAGGGAT ACGCTGGGTTTTAG back to top
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