NO14G00890.1, NO14G00890.1 (mRNA) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO14G00890.1 vs.
Match: EWM24731.1 (Ankyrin repeat-containing domain protein [Nannochloropsis gaditana]) HSP 1 Score: 171.4 bits (433), Expect = 5.500e-39 Identity = 135/368 (36.68%), Postives = 196/368 (53.26%), Query Frame = 0 Query: 41 SRSSVNYQDEQGRSPLGVVATMAGRPMVDFVKMLVGP-LTKLRIKDARLRTPLLLAAENDRTEIFIYLLERLSQYETGWQLTEEKDCYQRGPLHYMCQHRNVAGVRALLAVAGAPPVGAKVREDGEEEKKKKERIKVVVNARTSSGETPLFWLAQS---STFSSQEKERMEGGGNRQKERSSRDCSSIDDKNTADAVEIAELLLAAGADPQVVNAMGQKPMDVLDEGEGDDGKEGGVKNRLQALLSPERISRGRGETEKEEEEKEEQEAERKVAEKKGCENSSIAINTPFPKTA-AVAPPGGMLSSFPTRGVGFDA-------GNSSRIGIGSGSRSGSS------GGSAPKRLKIKLKAPAARAKDK 391 S VNYQDEQGRSPLGV T G+ D VK LV L ++DARLRTPLLLA+E ++T +YLL++L W+L +E+DC++RGPLHYMC+H NV GV+AL++VA A + E+G + ++VN +TSSGETPLFWLAQS + S+EK + + + C D +T D +EIA LL+ AGA+P+ NA+GQ P ++++ KEG V+ + L + + G+ E E+ E K+E + +S ++ P + P L+S P R G A G +G + R G++ GG+ K+L+IK++AP K Sbjct: 41 SLDEVNYQDEQGRSPLGVAVTREGQS--DLVKALVEEGNASLGLRDARLRTPLLLASEFNQTSNVLYLLKKLQAQNNKWRLADERDCFRRGPLHYMCKHWNVEGVQALVSVARAQASDVQNPENGNSSSV----LSLLVNEKTSSGETPLFWLAQSIADTNKKSKEKRFERAEAHDHTDEAVAHCHD-DKASTNDILEIARLLVGAGAEPRAGNALGQSPATLVNQMRA-RAKEGRVEELKEGLQALFLAAEGKCEDEEAWEVKKEDVRGASGVAVEASRDSPTGSSSTLPGVSQGPQPCRNSLASLPARREGSSATLSPGGVGLVRALGGQTNGRQGAAGGGRGPGGAVGKKLRIKMRAPTGEQDAK 400 The following BLAST results are available for this feature:
BLAST of NO14G00890.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1) Total hits: 1
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G00890.1 ID=NO14G00890.1|Name=NO14G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1173bpback to top protein sequence of NO14G00890.1 >NO14G00890.1-protein ID=NO14G00890.1-protein|Name=NO14G00890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=391bpback to top mRNA from alignment at chr14:304758..305930+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>NO14G00890.1 ID=NO14G00890.1|Name=NO14G00890.1|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp|location=Sequence derived from alignment at chr14:304758..305930+ (Nannochloropsis oceanica)back to top Coding sequence (CDS) from alignment at chr14:304758..305930+ >NO14G00890.1 ID=NO14G00890.1|Name=NO14G00890.1|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at chr14:304758..305930+ (Nannochloropsis oceanica)back to top Synonyms
Publications
|