NO14G00570.1, NO14G00570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO14G00570.1
Unique NameNO14G00570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1413
Alignment locationchr14:219736..221148 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr14genomechr14:219736..221148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO14G00570.1 vs.
Match: XP_009826771.1 (hypothetical protein H257_04092 [Aphanomyces astaci]; ETV83341.1 hypothetical protein H257_04092 [Aphanomyces astaci])

HSP 1 Score: 130.6 bits (327), Expect = 1.300e-26
Identity = 125/479 (26.10%), Postives = 199/479 (41.54%), Query Frame = 0 
Query:    1 MVTSPAHQVLLFDYAAGAAQALALRGYQASDLKEINMSTVGMTPILLQSAAGKLYMRYDQSLARASA---PVDLTGTTNFMWAWAESGYPAIHDRHGAIKINWIAGTCKPSIE-------RFLLGGYWLLLLPFLGLLLTCTRLKRTSWGHSLLQHRLGPIPTQLSA---WMNTFTGGAIPTFLNLKYGEIWIMATYG--ILQLAFMVYWTMKEGAVGVRTTGIAFGKAALTNLMMTFLPVNKTTVWVRLFGISFERSVKFHRQLSYLAMATMTIHLVCMTPKGPVWDRTPLAS-GVVVAYSLLAFLSFTFMSLTAM--LRRWCYELFRYAH-YLYIAGTAFVLLHAPEAWQYLVIPCVIHIADFSWRWYNILHNPTWATLAALPGDVTQVDVRHRQEKRSRSNGGADGIGGESKWALPLESGSYVWVCIPQLSLLQWHLISISTAGLLHEGVQSEAEAPLFHLHIKSLGKGTWTNGLY 461
            M+  P +  ++FD A   AQ   L+GY ++ +  +     G+      SA G L   ++++LA  S     +D    TN +WA+  + +P+ H   GA+K+   +G    S           ++G     L+  LGL+ T         G   +  R    PTQ  A   W++           +LK GE  ++  Y   ++ +   V  T    +   R   +  G  AL  LM   LPV +   W  +FG S ER +KFHR L  +     T+HLV       V       S  VV  Y  +AF+SF  M+L A+  +RR  YE+F Y H  + + G  F LLH+      ++ P V++   + +R     +   +AT+    G  T         +              +KW       ++ W+ IPQ+SLLQWH  S    G++    QS          IK+   G++ + +Y
Sbjct:   79 MINEPNNNAVIFDAAKNTAQLHVLKGYSSAGVP-VQTDQSGLVVKKTSSANGVLSFTFERTLAAPSVYDVDIDPAVPTNLLWAYGNTAWPSFHTERGAVKLALGSGALMDSAPDAGCYGTTAIIGAITFALMALLGLVAT-----HAGSGWRFINQRTVFPPTQHRAPLPWISH-------AISDLKIGEAIVVILYVACVVAVGVSVQVTFPTASAS-RLASLVSGHIALVALMFLLLPVARGQHWEVVFGTSHERIIKFHRWLGRVWFVAGTVHLVLTVLSVNVTSTNLYGSQQVVPLYGFVAFVSFASMALLAIDYIRRTYYEVFYYYHRVVSVVGLVFALLHSKAVQYAMIFPLVVYGVTYLYRLRTYFNR--YATVPKAHGSNTVALTLPASAQ-------------TAKWVRTSNPCAFFWINIPQVSLLQWHPFS----GIVTPDGQS------ISFRIKAHAPGSFVDNVY 518
The following BLAST results are available for this feature:
BLAST of NO14G00570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009826771.11.300e-2626.10hypothetical protein H257_04092 [Aphanomyces astac... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G00570NO14G00570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO14G00570.1NO14G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO14G00570.1.cds1NO14G00570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO14G00570.1 ID=NO14G00570.1|Name=NO14G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp
ATGGTCACTTCACCGGCACACCAAGTCCTGCTCTTTGATTATGCCGCTGG
TGCAGCCCAAGCATTGGCGCTACGAGGCTATCAGGCAAGCGATTTGAAGG
AGATAAATATGTCCACAGTTGGTATGACGCCTATCTTGCTGCAAAGTGCA
GCTGGTAAGCTCTACATGCGGTACGATCAGTCGCTGGCTCGTGCGAGCGC
TCCTGTGGACCTCACTGGCACTACCAACTTTATGTGGGCCTGGGCCGAAT
CTGGCTACCCTGCGATTCACGACCGTCATGGAGCCATTAAAATAAACTGG
ATCGCAGGCACGTGCAAGCCTTCGATAGAGCGATTCCTCCTCGGAGGATA
CTGGCTCCTACTACTGCCTTTTCTTGGTCTACTTCTGACGTGTACAAGGC
TTAAACGGACATCTTGGGGCCACAGCCTTTTGCAACATCGCCTAGGTCCG
ATCCCCACTCAACTGTCCGCATGGATGAATACGTTCACAGGAGGTGCAAT
CCCCACTTTCCTCAACCTGAAGTACGGCGAGATATGGATAATGGCGACGT
ACGGCATCCTGCAATTAGCTTTCATGGTGTATTGGACCATGAAGGAAGGT
GCAGTGGGCGTCCGAACAACAGGAATTGCCTTCGGAAAAGCCGCGCTTAC
CAATCTGATGATGACATTCTTACCAGTAAACAAAACAACGGTGTGGGTGC
GGCTGTTTGGCATTTCATTCGAGCGGTCCGTCAAGTTTCACCGGCAGTTG
TCGTATCTAGCGATGGCCACGATGACCATCCATCTTGTGTGCATGACGCC
CAAGGGCCCCGTGTGGGACCGCACACCTCTCGCCAGTGGCGTCGTCGTGG
CCTACAGTCTCCTGGCTTTCCTTTCCTTTACATTTATGTCCTTGACGGCC
ATGCTCCGGCGGTGGTGCTATGAGCTGTTCCGGTACGCACACTACCTTTA
CATCGCAGGTACTGCCTTTGTCTTGCTCCATGCCCCGGAAGCTTGGCAAT
ATTTAGTTATTCCTTGCGTTATACACATCGCGGACTTTTCCTGGCGATGG
TATAACATCCTCCACAATCCTACTTGGGCCACACTTGCTGCCTTACCCGG
TGACGTGACGCAGGTGGACGTCAGACACAGACAGGAAAAACGCAGCCGCA
GCAATGGCGGCGCAGATGGCATAGGCGGCGAGAGCAAGTGGGCCTTACCC
TTAGAGTCCGGAAGCTATGTCTGGGTCTGCATTCCTCAATTGTCTCTACT
ACAATGGCATCTTATTTCCATATCAACAGCCGGCTTGCTGCATGAAGGGG
TGCAGTCGGAAGCGGAGGCGCCGCTCTTTCATCTTCACATCAAGAGCCTG
GGCAAGGGTACTTGGACCAATGGTCTTTACCAAGTAGCTGCTCAAGGAGT
CGTGCCCAAATAG
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protein sequence of NO14G00570.1

>NO14G00570.1-protein ID=NO14G00570.1-protein|Name=NO14G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MVTSPAHQVLLFDYAAGAAQALALRGYQASDLKEINMSTVGMTPILLQSA
AGKLYMRYDQSLARASAPVDLTGTTNFMWAWAESGYPAIHDRHGAIKINW
IAGTCKPSIERFLLGGYWLLLLPFLGLLLTCTRLKRTSWGHSLLQHRLGP
IPTQLSAWMNTFTGGAIPTFLNLKYGEIWIMATYGILQLAFMVYWTMKEG
AVGVRTTGIAFGKAALTNLMMTFLPVNKTTVWVRLFGISFERSVKFHRQL
SYLAMATMTIHLVCMTPKGPVWDRTPLASGVVVAYSLLAFLSFTFMSLTA
MLRRWCYELFRYAHYLYIAGTAFVLLHAPEAWQYLVIPCVIHIADFSWRW
YNILHNPTWATLAALPGDVTQVDVRHRQEKRSRSNGGADGIGGESKWALP
LESGSYVWVCIPQLSLLQWHLISISTAGLLHEGVQSEAEAPLFHLHIKSL
GKGTWTNGLYQVAAQGVVPK*
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mRNA from alignment at chr14:219736..221148-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO14G00570.1 ID=NO14G00570.1|Name=NO14G00570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp|location=Sequence derived from alignment at chr14:219736..221148- (Nannochloropsis oceanica)
ATGGTCACTTCACCGGCACACCAAGTCCTGCTCTTTGATTATGCCGCTGG
TGCAGCCCAAGCATTGGCGCTACGAGGCTATCAGGCAAGCGATTTGAAGG
AGATAAATATGTCCACAGTTGGTATGACGCCTATCTTGCTGCAAAGTGCA
GCTGGTAAGCTCTACATGCGGTACGATCAGTCGCTGGCTCGTGCGAGCGC
TCCTGTGGACCTCACTGGCACTACCAACTTTATGTGGGCCTGGGCCGAAT
CTGGCTACCCTGCGATTCACGACCGTCATGGAGCCATTAAAATAAACTGG
ATCGCAGGCACGTGCAAGCCTTCGATAGAGCGATTCCTCCTCGGAGGATA
CTGGCTCCTACTACTGCCTTTTCTTGGTCTACTTCTGACGTGTACAAGGC
TTAAACGGACATCTTGGGGCCACAGCCTTTTGCAACATCGCCTAGGTCCG
ATCCCCACTCAACTGTCCGCATGGATGAATACGTTCACAGGAGGTGCAAT
CCCCACTTTCCTCAACCTGAAGTACGGCGAGATATGGATAATGGCGACGT
ACGGCATCCTGCAATTAGCTTTCATGGTGTATTGGACCATGAAGGAAGGT
GCAGTGGGCGTCCGAACAACAGGAATTGCCTTCGGAAAAGCCGCGCTTAC
CAATCTGATGATGACATTCTTACCAGTAAACAAAACAACGGTGTGGGTGC
GGCTGTTTGGCATTTCATTCGAGCGGTCCGTCAAGTTTCACCGGCAGTTG
TCGTATCTAGCGATGGCCACGATGACCATCCATCTTGTGTGCATGACGCC
CAAGGGCCCCGTGTGGGACCGCACACCTCTCGCCAGTGGCGTCGTCGTGG
CCTACAGTCTCCTGGCTTTCCTTTCCTTTACATTTATGTCCTTGACGGCC
ATGCTCCGGCGGTGGTGCTATGAGCTGTTCCGGTACGCACACTACCTTTA
CATCGCAGGTACTGCCTTTGTCTTGCTCCATGCCCCGGAAGCTTGGCAAT
ATTTAGTTATTCCTTGCGTTATACACATCGCGGACTTTTCCTGGCGATGG
TATAACATCCTCCACAATCCTACTTGGGCCACACTTGCTGCCTTACCCGG
TGACGTGACGCAGGTGGACGTCAGACACAGACAGGAAAAACGCAGCCGCA
GCAATGGCGGCGCAGATGGCATAGGCGGCGAGAGCAAGTGGGCCTTACCC
TTAGAGTCCGGAAGCTATGTCTGGGTCTGCATTCCTCAATTGTCTCTACT
ACAATGGCATCTTATTTCCATATCAACAGCCGGCTTGCTGCATGAAGGGG
TGCAGTCGGAAGCGGAGGCGCCGCTCTTTCATCTTCACATCAAGAGCCTG
GGCAAGGGTACTTGGACCAATGGTCTTTACCAAGTAGCTGCTCAAGGAGT
CGTGCCCAAATAG
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Coding sequence (CDS) from alignment at chr14:219736..221148-

>NO14G00570.1 ID=NO14G00570.1|Name=NO14G00570.1|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr14:219736..221148- (Nannochloropsis oceanica)
ATGGTCACTTCACCGGCACACCAAGTCCTGCTCTTTGATTATGCCGCTGG
TGCAGCCCAAGCATTGGCGCTACGAGGCTATCAGGCAAGCGATTTGAAGG
AGATAAATATGTCCACAGTTGGTATGACGCCTATCTTGCTGCAAAGTGCA
GCTGGTAAGCTCTACATGCGGTACGATCAGTCGCTGGCTCGTGCGAGCGC
TCCTGTGGACCTCACTGGCACTACCAACTTTATGTGGGCCTGGGCCGAAT
CTGGCTACCCTGCGATTCACGACCGTCATGGAGCCATTAAAATAAACTGG
ATCGCAGGCACGTGCAAGCCTTCGATAGAGCGATTCCTCCTCGGAGGATA
CTGGCTCCTACTACTGCCTTTTCTTGGTCTACTTCTGACGTGTACAAGGC
TTAAACGGACATCTTGGGGCCACAGCCTTTTGCAACATCGCCTAGGTCCG
ATCCCCACTCAACTGTCCGCATGGATGAATACGTTCACAGGAGGTGCAAT
CCCCACTTTCCTCAACCTGAAGTACGGCGAGATATGGATAATGGCGACGT
ACGGCATCCTGCAATTAGCTTTCATGGTGTATTGGACCATGAAGGAAGGT
GCAGTGGGCGTCCGAACAACAGGAATTGCCTTCGGAAAAGCCGCGCTTAC
CAATCTGATGATGACATTCTTACCAGTAAACAAAACAACGGTGTGGGTGC
GGCTGTTTGGCATTTCATTCGAGCGGTCCGTCAAGTTTCACCGGCAGTTG
TCGTATCTAGCGATGGCCACGATGACCATCCATCTTGTGTGCATGACGCC
CAAGGGCCCCGTGTGGGACCGCACACCTCTCGCCAGTGGCGTCGTCGTGG
CCTACAGTCTCCTGGCTTTCCTTTCCTTTACATTTATGTCCTTGACGGCC
ATGCTCCGGCGGTGGTGCTATGAGCTGTTCCGGTACGCACACTACCTTTA
CATCGCAGGTACTGCCTTTGTCTTGCTCCATGCCCCGGAAGCTTGGCAAT
ATTTAGTTATTCCTTGCGTTATACACATCGCGGACTTTTCCTGGCGATGG
TATAACATCCTCCACAATCCTACTTGGGCCACACTTGCTGCCTTACCCGG
TGACGTGACGCAGGTGGACGTCAGACACAGACAGGAAAAACGCAGCCGCA
GCAATGGCGGCGCAGATGGCATAGGCGGCGAGAGCAAGTGGGCCTTACCC
TTAGAGTCCGGAAGCTATGTCTGGGTCTGCATTCCTCAATTGTCTCTACT
ACAATGGCATCTTATTTCCATATCAACAGCCGGCTTGCTGCATGAAGGGG
TGCAGTCGGAAGCGGAGGCGCCGCTCTTTCATCTTCACATCAAGAGCCTG
GGCAAGGGTACTTGGACCAATGGTCTTTACCAAGTAGCTGCTCAAGGAGT
CGTGCCCAAATAG
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Synonyms
Publications