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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr14 | genome | chr14:89408..91479 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO14G00250.1 vs.
Match: EWM24769.1 (ubiquitin-conjugating enzyme e2 j1 [Nannochloropsis gaditana]) HSP 1 Score: 375.9 bits (964), Expect = 1.500e-100 Identity = 225/396 (56.82%), Postives = 255/396 (64.39%), Query Frame = 0
Query: 1 MSEQAPKGNVKNPAIRRIHADIRELQKEPSDQYHAAPLEENLFEWHFTLRGPPASDYFNGIYHGRILLPAEYPFKPPNIMLMTPNGRFEVGKKICLSISAHHPEHWQPAWGVRLILEALISFFPTEPKGAVGSLDWTPRERQRLAVESQSWSCPRCGPAQALLPPLIHPSSSPSIEKVDEEGGEEGGKGVEQ---KSKYAEEISQLYMREMLDGTERQEEGQGGEGGGAGEERSGRGGGAEASLSESSSSSSSSAAAPAVSSGAVVPLPSLSPVLATGEGGGGGGDQGGLRRRVATTTSSSPSSLSTFASAATRPPTQLAAAEAAAAAAAATATATAGGAGGETVRVMEVEEEEEGEEEKEDKLFYLAVGLFCLLVLLVGRKMARSWAREGGAYFD 394
M E KGNVKNPAIRRIHADIRELQK+PSDQYHAAPLEENLFEWHFTLRGPPA+DY G+YHGRILLPAEYPFKPPNIML+TP+GRFE+GKKICLSISAHHPEHWQPAWG LILEALISFFPTEPKGAVGSLDWTP ER+RLAVESQSW C RCG + LLPPL S K EEG EEG G E K YAE +SQLY+R + QEE G + +E G+ G S S+A+P+ VP P+ + LR++ A TS + SSL+ SA TR + +AA A EE EGEEEKEDKLFYLAV LF LL+LLVGRK+AR+W R+ G Y +
Sbjct: 35 MDEHPRKGNVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDGGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWG-GLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESQSWCCARCGLIKTLLPPLNTVFGEES-GKEGEEGEEEGADGAENNGGKRTYAEAVSQLYVRAASESAASQEEALGED-----KEDGGQKDGGVKPYPTLKHESGGSSASPS------VPTPA----------------EPNLRQQAAAPTSITSSSLARQRSAGTRSSSINSAAVAFV-------------------------EENEGEEEKEDKLFYLAVFLFLLLILLVGRKLARAWIRQRGVYLE 376
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO14G00250.1 ID=NO14G00250.1|Name=NO14G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp ATGAGCGAGCAGGCCCCAAAAGGAAATGTCAAGAACCCGGCCATCCGCCG CATCCACGCGGACATTCGGGAATTGCAAAAAGAGCCGTCAGACCAATACC ATGCCGCCCCACTGGAGGAAAACCTATTTGAGTGGCATTTCACCTTGAGA GGGCCTCCTGCCAGTGACTACTTTAATGGTATCTACCACGGGCGCATCCT CCTCCCAGCAGAGTACCCATTCAAACCACCCAACATAATGCTCATGACGC CCAACGGCCGTTTCGAGGTCGGAAAGAAGATCTGCCTCTCCATCTCTGCC CATCATCCAGAGCATTGGCAGCCAGCTTGGGGGGTACGCCTTATTCTAGA AGCCCTTATTTCTTTCTTTCCCACAGAGCCTAAGGGGGCCGTCGGGTCCC TCGACTGGACGCCGCGAGAACGACAACGACTAGCGGTGGAGTCGCAAAGC TGGAGCTGTCCTCGTTGTGGCCCGGCCCAAGCCCTCCTTCCCCCCCTCAT TCACCCCAGCAGCAGCCCTTCTATTGAGAAAGTGGACGAGGAAGGGGGGG AGGAAGGGGGGAAGGGAGTGGAGCAGAAGAGTAAGTACGCCGAGGAGATC TCGCAGTTGTATATGAGGGAAATGCTGGACGGGACGGAGAGACAGGAGGA GGGGCAGGGAGGAGAGGGAGGAGGGGCAGGAGAGGAAAGGAGTGGAAGAG GAGGAGGGGCAGAAGCCTCTCTCTCAGAATCATCATCCTCCTCTTCCTCC TCTGCTGCTGCTCCTGCTGTTTCCAGCGGTGCGGTGGTCCCTCTCCCTTC TCTTTCTCCTGTGCTCGCCACAGGAGAAGGAGGAGGAGGGGGAGGAGACC AGGGGGGACTGCGCCGTCGCGTGGCCACCACCACCTCTTCCTCCCCTTCC TCCTTGTCGACCTTCGCCTCAGCAGCTACGAGACCACCCACACAGCTGGC AGCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAG CAGGAGGTGCGGGGGGGGAAACAGTACGGGTTATGGAGGTGGAGGAGGAG GAAGAAGGGGAGGAAGAGAAGGAAGACAAGCTCTTCTACCTCGCCGTTGG CCTCTTCTGCCTGCTGGTGCTGTTGGTAGGACGAAAGATGGCGAGATCAT GGGCGAGGGAGGGAGGGGCGTACTTTGACGGGCTAGGGTCATGA back to topprotein sequence of NO14G00250.1 >NO14G00250.1-protein ID=NO14G00250.1-protein|Name=NO14G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp MSEQAPKGNVKNPAIRRIHADIRELQKEPSDQYHAAPLEENLFEWHFTLR GPPASDYFNGIYHGRILLPAEYPFKPPNIMLMTPNGRFEVGKKICLSISA HHPEHWQPAWGVRLILEALISFFPTEPKGAVGSLDWTPRERQRLAVESQS WSCPRCGPAQALLPPLIHPSSSPSIEKVDEEGGEEGGKGVEQKSKYAEEI SQLYMREMLDGTERQEEGQGGEGGGAGEERSGRGGGAEASLSESSSSSSS SAAAPAVSSGAVVPLPSLSPVLATGEGGGGGGDQGGLRRRVATTTSSSPS SLSTFASAATRPPTQLAAAEAAAAAAAATATATAGGAGGETVRVMEVEEE EEGEEEKEDKLFYLAVGLFCLLVLLVGRKMARSWAREGGAYFDGLGS* back to topmRNA from alignment at chr14:89408..91479- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO14G00250.1 ID=NO14G00250.1|Name=NO14G00250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2072bp|location=Sequence derived from alignment at chr14:89408..91479- (Nannochloropsis oceanica) ATGAGCGAGCAGGCCCCAAAAGGAAATGTCAAGAACCCGGCCATCCGCCG
CATCCACGCGGTGAGTGAATGTACACAGCAAATGACGGAGGAGAAGTATA
TGTCCATTTTTTGTCAAGGCAATAGGAAGGCTCAAGCGAAGGACTTCTCG
CTCACACCCCTCCCTCCCATTCCCACCCCCCGCATGGGTGTACAGGACAT
TCGGGAATTGCAAAAAGAGCCGTCAGACCAATACCATGCCGCCCCACTGG
AGGTAGGAGTTCAAAATTTAAGGAAGATAGACAGGAAGCGGGAGTCGATG
GACGCATGGTTGCTCATCGTCTCTTCTCCTTTTCCTTCCCCCCCTCCTTC
TTTCACCCTCCCTCCCCTTCCCTCCCCTCAAGGAAAACCTATTTGAGTGG
CATTTCACCTTGAGAGGGCCTCCTGCCAGTGACTACTTTAATGGTATCTA
CCACGGGCGCATCCTCCTCCCAGCAGAGTACCCATTCAAACCACCCAACA
TAATGCTCATGACGGTAAATGAAAGCCCCTCCCTCCCTCCCTCCTTCCTT
CCCTCCCTCTCCTTGCCTCCATCCATACCCACGCATTTAATAAGCGCGCC
CACCCGCTTTCTATTCCATGGCCCGCTGCCGTTTGGCAATTAAGCCTCCT
CTACCCATCTCACCCTCCCTCCCTCCCTCCCTTCCTTCCTCCCTCCCTTC
CTCTCTCCCTCCCTCCCTCTCTCTCCCCCTCCAGCCCAACGGCCGTTTCG
AGGTCGGAAAGAAGATCTGCCTCTCCATCTCTGCCCATCATCCAGAGCAT
TGGCAGCCAGCTTGGGGGGGTGAGTGGATGAGGGAGGGAGAGAGGGAGGG
AGGGAGGGAGGGGGAGCATCCCTTGTAGCAGTAGCAGTGACAACACTGAT
TTGTCATGACTCACCTTCAACTTCCTCCCTCCCGCCTTCCGTCCCTCCTT
CGAGTCTTCCTCTTCCTCTTTACTGAAGTTCTACTTTTCCCCCACCCCAC
TGAGTCAGATGACACCTACTCCGCCTCACCCTTCCCTCCCTCCCTCCCTC
CCTCCCTCCCGCGCAGTACGCCTTATTCTAGAAGCCCTTATTTCTTTCTT
TCCCACAGAGCCTAAGGGGGCCGTCGGGTCCCTCGACTGGACGCCGCGAG
AACGACAACGACTAGCGGTGGAGGTAGGGGGGGGGGGGGGGAGGAGGGAG
GGACGGCTGGTCGACACATAAAAGGCCGAATACCTTGTCCGCGGGTTTGT
CGTCATCGTCTCACATGTCCCTCTCTTTCTTGCCACTTTCCTCCCTCCTA
TCATTGACACCATTATAAGTCGCAAAGCTGGAGCTGTCCTCGTTGTGGCC
CGGCCCAAGCCCTCCTTCCCCCCCTCATTCACCCCAGCAGCAGCCCTTCT
ATTGAGAAAGTGGACGAGGAAGGGGGGGAGGAAGGGGGGAAGGGAGTGGA
GCAGAAGAGTAAGTACGCCGAGGAGATCTCGCAGTTGTATATGAGGGAAA
TGCTGGACGGGACGGAGAGACAGGAGGAGGGGCAGGGAGGAGAGGGAGGA
GGGGCAGGAGAGGAAAGGAGTGGAAGAGGAGGAGGGGCAGAAGCCTCTCT
CTCAGAATCATCATCCTCCTCTTCCTCCTCTGCTGCTGCTCCTGCTGTTT
CCAGCGGTGCGGTGGTCCCTCTCCCTTCTCTTTCTCCTGTGCTCGCCACA
GGAGAAGGAGGAGGAGGGGGAGGAGACCAGGGGGGACTGCGCCGTCGCGT
GGCCACCACCACCTCTTCCTCCCCTTCCTCCTTGTCGACCTTCGCCTCAG
CAGCTACGAGACCACCCACACAGCTGGCAGCAGCAGAAGCAGCAGCAGCA
GCAGCAGCAGCAACAGCAACAGCAACAGCAGGAGGTGCGGGGGGGGAAAC
AGTACGGGTTATGGAGGTGGAGGAGGAGGAAGAAGGGGAGGAAGAGAAGG
AAGACAAGCTCTTCTACCTCGCCGTTGGCCTCTTCTGCCTGCTGGTGCTG
TTGGTAGGACGAAAGATGGCGAGATCATGGGCGAGGGAGGGAGGGGCGTA
CTTTGACGGGCTAGGGTCATGA back to topCoding sequence (CDS) from alignment at chr14:89408..91479- >NO14G00250.1 ID=NO14G00250.1|Name=NO14G00250.1|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at chr14:89408..91479- (Nannochloropsis oceanica) ATGAGCGAGCAGGCCCCAAAAGGAAATGTCAAGAACCCGGCCATCCGCCG CATCCACGCGGACATTCGGGAATTGCAAAAAGAGCCGTCAGACCAATACC ATGCCGCCCCACTGGAGGAAAACCTATTTGAGTGGCATTTCACCTTGAGA GGGCCTCCTGCCAGTGACTACTTTAATGGTATCTACCACGGGCGCATCCT CCTCCCAGCAGAGTACCCATTCAAACCACCCAACATAATGCTCATGACGC CCAACGGCCGTTTCGAGGTCGGAAAGAAGATCTGCCTCTCCATCTCTGCC CATCATCCAGAGCATTGGCAGCCAGCTTGGGGGGTACGCCTTATTCTAGA AGCCCTTATTTCTTTCTTTCCCACAGAGCCTAAGGGGGCCGTCGGGTCCC TCGACTGGACGCCGCGAGAACGACAACGACTAGCGGTGGAGTCGCAAAGC TGGAGCTGTCCTCGTTGTGGCCCGGCCCAAGCCCTCCTTCCCCCCCTCAT TCACCCCAGCAGCAGCCCTTCTATTGAGAAAGTGGACGAGGAAGGGGGGG AGGAAGGGGGGAAGGGAGTGGAGCAGAAGAGTAAGTACGCCGAGGAGATC TCGCAGTTGTATATGAGGGAAATGCTGGACGGGACGGAGAGACAGGAGGA GGGGCAGGGAGGAGAGGGAGGAGGGGCAGGAGAGGAAAGGAGTGGAAGAG GAGGAGGGGCAGAAGCCTCTCTCTCAGAATCATCATCCTCCTCTTCCTCC TCTGCTGCTGCTCCTGCTGTTTCCAGCGGTGCGGTGGTCCCTCTCCCTTC TCTTTCTCCTGTGCTCGCCACAGGAGAAGGAGGAGGAGGGGGAGGAGACC AGGGGGGACTGCGCCGTCGCGTGGCCACCACCACCTCTTCCTCCCCTTCC TCCTTGTCGACCTTCGCCTCAGCAGCTACGAGACCACCCACACAGCTGGC AGCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAG CAGGAGGTGCGGGGGGGGAAACAGTACGGGTTATGGAGGTGGAGGAGGAG GAAGAAGGGGAGGAAGAGAAGGAAGACAAGCTCTTCTACCTCGCCGTTGG CCTCTTCTGCCTGCTGGTGCTGTTGGTAGGACGAAAGATGGCGAGATCAT GGGCGAGGGAGGGAGGGGCGTACTTTGACGGGCTAGGGTCATGA back to top
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