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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:980812..983004 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G03320.1 vs.
Match: XP_008903071.1 (hypothetical protein PPTG_10193 [Phytophthora parasitica INRA-310]; ETI50949.1 hypothetical protein F443_05579 [Phytophthora parasitica P1569]; ETK90845.1 hypothetical protein L915_05444 [Phytophthora parasitica]; ETL44256.1 hypothetical protein L916_05390 [Phytophthora parasitica]; ETL97423.1 hypothetical protein L917_05279 [Phytophthora parasitica]; ETM50580.1 hypothetical protein L914_05396 [Phytophthora parasitica]; ETN11254.1 hypothetical protein PPTG_10193 [Phytophthora parasitica INRA-310]; ETO79703.1 hypothetical protein F444_05630 [Phytophthora parasitica P1976]; ETP20716.1 hypothetical protein F441_05593 [Phytophthora parasitica CJ01A1]; ETP48659.1 hypothetical protein F442_05625 [Phytophthora parasitica P10297]; KUF64361.1 PNS1 protein [Phytophthora nicotianae]; KUF91149.1 IQ domain-containing protein G [Phytophthora nicotianae]) HSP 1 Score: 81.6 bits (200), Expect = 1.100e-11 Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 0
Query: 597 FIRTHHPLALVHVAAYKKSFSTAARDVWTLLVAAGLDSILRTDALSHTLHALGTT-AGCLTALMSLLLFGASAGVGVAVVLPGALAYILVMTALEPLLATVNAAYVSFAETPALVSQTFPLIFHRLDRIAEVRNF 731
FIRT+H A VH+A Y K + AA D W L+ G+++I+ D S L G AG ++AL + L GAS+ ++ L Y + A + + A + +V FAE P +SQ PLI+HR R+AE+++F
Sbjct: 408 FIRTYHKYAFVHIAGYNKPYYVAAHDAWKLIEHHGVEAIVDDDLTSRILLFGGNGWAGVMSALTASALAGASSHATFFTLVAFTLCYTTISLATQVIAAVIKTLFVCFAENPGRLSQLHPLIYHRFVRLAELKSF 542
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G03320.1 ID=NO13G03320.1|Name=NO13G03320.1|organism=Nannochloropsis oceanica|type=mRNA|length=2193bp ATGTGGCTATCGTCCTCCGCGGTGCCTCCTCCGCCTTCGGGCGCGGGCCA TCACCACGACGACTATGCCCCTCTCCCTCTCCCTCCTCCCTCTCCCTCGG GCCACCACAAGGAACTGCCCTTCTCCCACGACGGCGATGAGGAAACCATC ACCGAGACTCTCTCTCCATATTGTTCGAACTCCCAACATGCAAATACTCC CAACTCGTGTTCAAACTCTTCCCCTGCCGCCTCCTCCTCCTCTTCCCCCT CCTCTTCCCCCTCCTCCTTCGTCCCCGGTGTGGGCATTATGAGCCTCCGT CGACCCCTCGCGTATAAGGACCGAGGTTTCACCGCCGTCTTTGCCTTGCA CGTCCTCACTTTGTTCCTCGTCCTGTCCACCGACAAAGAATTGTCTCCTC CGTCTTCCTCTTTTTCCCCATCACCACAAACACAAGGCGAGCAACCACCA ACGTATCACTTCTACCACACGGCCGCCCGTCTCCTCCTCTCCATCCTCGC TGGAGCTGCTCTGGCCTATTTTTTCATTCTCCGTGCAGTTTTTTACAATA AAAGTATCGGTGGTATTATCTCCCGCCGGCGACTGCTCCTCCATGCCTCC CACTTCTCCCTCGCCTCTCAAACCGTCCTCCTCTTCGTCCTCCTCTACTC CAATCCCTTTCCCCTACCCTTCCTCCTTCTCCTTCTCTTCCCTCTCTCCA TCAGCCTTTGGCACGAGCAACGCTATTGGCGTCGACGTGTACAAGAACAA GGAGAGTTCGTGGTTGTCCTGGGGGAAATGACCAGTGACATCCTCGCTCC CTCCCTCCCCCTCTGTTATGCTAGCCGGGGGATTCTCTTCCTCCAAACCT CCTTCCTCATACTATGGGCCATGGTCTTTGCCTCGGCCTTCTGCACCTCC GTCACAGAACCCTCTTCTACCACTGCTGCTATTCCTGCTACTGCTGCTGC TGCTGCCGCCACCAGGAGCAGAGGCACCCCGGCCTTCCTCCCCTTCGTCC TCCTCCTCCTTAACCTTTATTGGACCTCCCACCTGCTCCGCAAGACACTC CACGTCCTCCTCTCGGGCTCGGTGACCCGTTGGTTCTACAGTGCGCTCGA GGGAGGGGGGGAAGAAGAGAGGGAGGGAGGGAGGGACCGAAGGAGGACGA GAAGTAGCATCACCCAAGAAGCGGGAGGATTTGAATATGACCGGACCAAG AACCCGTTTTATGATGACGATGATGATGATCATGAGGAGAAGGAGGAACA GGGAGAGAATGACGTAGAAGGTGAGTTGCATAAGGGCTTTATGCTGTCGG AGCAGCAGCAGCAGCAGGAGGTTCAGCCAGGAAGGAAAATCAGGCAGCGA CGTGGTAGCCCCACAGGGATGACGGTTGACATTTACGGGGACGACGGGCC TGACGAGGACAGCAGCGACAGCCCTCCCTCCCCCCCGCCCTTCTCCTCCT CCAACTTGTCGGGGGAAGTCCTCCTGCATCACCTGGCCTGTGCCCTCAGC GTGTCCTTGGGCTCTCTGTGCCAGGCCGCTTTTTGTTGCCCCCTGGCCCA CGCGCTCTGGGCTTGGCAAGGCTACACGGTTTCCCACCAAGACTCGGACA TGCACACCATGCCCACGGCGGTCAGCCACCGCCCGACCTCGCATTCTTTC GTGCCGTCTGCTTCTTTGGCCTCGACCTTGCCCTCCCACGCGGCCTCGAG ACAGCGTGGGGGAGGGGGAGGAAGAACTGCAGGCGGGAAGCTCCCCTCGT CCTCCCCCTCGTCCTCCCCCTCCTCTTGCCCCTCCTCCTTCATCCGCACG CACCACCCTCTCGCCCTCGTCCACGTGGCAGCCTACAAGAAATCTTTTTC CACCGCCGCCCGCGACGTGTGGACCCTCCTCGTCGCTGCCGGCCTCGACT CGATCCTCCGTACCGATGCTTTGTCACACACCCTCCACGCACTGGGCACC ACAGCCGGGTGCTTGACCGCACTAATGTCCCTCCTCCTCTTTGGTGCTAG TGCGGGGGTGGGAGTTGCCGTGGTCTTGCCCGGTGCCCTGGCGTACATCT TGGTAATGACGGCCTTGGAACCCCTGCTCGCCACGGTTAATGCGGCTTAC GTGAGCTTCGCGGAGACCCCGGCTTTGGTGTCGCAGACCTTCCCGTTGAT CTTCCACCGCTTGGATCGCATTGCGGAGGTGCGAAATTTTTGA back to topprotein sequence of NO13G03320.1 >NO13G03320.1-protein ID=NO13G03320.1-protein|Name=NO13G03320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=731bp MWLSSSAVPPPPSGAGHHHDDYAPLPLPPPSPSGHHKELPFSHDGDEETI TETLSPYCSNSQHANTPNSCSNSSPAASSSSSPSSSPSSFVPGVGIMSLR RPLAYKDRGFTAVFALHVLTLFLVLSTDKELSPPSSSFSPSPQTQGEQPP TYHFYHTAARLLLSILAGAALAYFFILRAVFYNKSIGGIISRRRLLLHAS HFSLASQTVLLFVLLYSNPFPLPFLLLLLFPLSISLWHEQRYWRRRVQEQ GEFVVVLGEMTSDILAPSLPLCYASRGILFLQTSFLILWAMVFASAFCTS VTEPSSTTAAIPATAAAAAATRSRGTPAFLPFVLLLLNLYWTSHLLRKTL HVLLSGSVTRWFYSALEGGGEEEREGGRDRRRTRSSITQEAGGFEYDRTK NPFYDDDDDDHEEKEEQGENDVEGELHKGFMLSEQQQQQEVQPGRKIRQR RGSPTGMTVDIYGDDGPDEDSSDSPPSPPPFSSSNLSGEVLLHHLACALS VSLGSLCQAAFCCPLAHALWAWQGYTVSHQDSDMHTMPTAVSHRPTSHSF VPSASLASTLPSHAASRQRGGGGGRTAGGKLPSSSPSSSPSSCPSSFIRT HHPLALVHVAAYKKSFSTAARDVWTLLVAAGLDSILRTDALSHTLHALGT TAGCLTALMSLLLFGASAGVGVAVVLPGALAYILVMTALEPLLATVNAAY VSFAETPALVSQTFPLIFHRLDRIAEVRNF* back to topmRNA from alignment at chr13:980812..983004- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G03320.1 ID=NO13G03320.1|Name=NO13G03320.1|organism=Nannochloropsis oceanica|type=mRNA|length=2193bp|location=Sequence derived from alignment at chr13:980812..983004- (Nannochloropsis oceanica) ATGTGGCTATCGTCCTCCGCGGTGCCTCCTCCGCCTTCGGGCGCGGGCCA
TCACCACGACGACTATGCCCCTCTCCCTCTCCCTCCTCCCTCTCCCTCGG
GCCACCACAAGGAACTGCCCTTCTCCCACGACGGCGATGAGGAAACCATC
ACCGAGACTCTCTCTCCATATTGTTCGAACTCCCAACATGCAAATACTCC
CAACTCGTGTTCAAACTCTTCCCCTGCCGCCTCCTCCTCCTCTTCCCCCT
CCTCTTCCCCCTCCTCCTTCGTCCCCGGTGTGGGCATTATGAGCCTCCGT
CGACCCCTCGCGTATAAGGACCGAGGTTTCACCGCCGTCTTTGCCTTGCA
CGTCCTCACTTTGTTCCTCGTCCTGTCCACCGACAAAGAATTGTCTCCTC
CGTCTTCCTCTTTTTCCCCATCACCACAAACACAAGGCGAGCAACCACCA
ACGTATCACTTCTACCACACGGCCGCCCGTCTCCTCCTCTCCATCCTCGC
TGGAGCTGCTCTGGCCTATTTTTTCATTCTCCGTGCAGTTTTTTACAATA
AAAGTATCGGTGGTATTATCTCCCGCCGGCGACTGCTCCTCCATGCCTCC
CACTTCTCCCTCGCCTCTCAAACCGTCCTCCTCTTCGTCCTCCTCTACTC
CAATCCCTTTCCCCTACCCTTCCTCCTTCTCCTTCTCTTCCCTCTCTCCA
TCAGCCTTTGGCACGAGCAACGCTATTGGCGTCGACGTGTACAAGAACAA
GGAGAGTTCGTGGTTGTCCTGGGGGAAATGACCAGTGACATCCTCGCTCC
CTCCCTCCCCCTCTGTTATGCTAGCCGGGGGATTCTCTTCCTCCAAACCT
CCTTCCTCATACTATGGGCCATGGTCTTTGCCTCGGCCTTCTGCACCTCC
GTCACAGAACCCTCTTCTACCACTGCTGCTATTCCTGCTACTGCTGCTGC
TGCTGCCGCCACCAGGAGCAGAGGCACCCCGGCCTTCCTCCCCTTCGTCC
TCCTCCTCCTTAACCTTTATTGGACCTCCCACCTGCTCCGCAAGACACTC
CACGTCCTCCTCTCGGGCTCGGTGACCCGTTGGTTCTACAGTGCGCTCGA
GGGAGGGGGGGAAGAAGAGAGGGAGGGAGGGAGGGACCGAAGGAGGACGA
GAAGTAGCATCACCCAAGAAGCGGGAGGATTTGAATATGACCGGACCAAG
AACCCGTTTTATGATGACGATGATGATGATCATGAGGAGAAGGAGGAACA
GGGAGAGAATGACGTAGAAGGTGAGTTGCATAAGGGCTTTATGCTGTCGG
AGCAGCAGCAGCAGCAGGAGGTTCAGCCAGGAAGGAAAATCAGGCAGCGA
CGTGGTAGCCCCACAGGGATGACGGTTGACATTTACGGGGACGACGGGCC
TGACGAGGACAGCAGCGACAGCCCTCCCTCCCCCCCGCCCTTCTCCTCCT
CCAACTTGTCGGGGGAAGTCCTCCTGCATCACCTGGCCTGTGCCCTCAGC
GTGTCCTTGGGCTCTCTGTGCCAGGCCGCTTTTTGTTGCCCCCTGGCCCA
CGCGCTCTGGGCTTGGCAAGGCTACACGGTTTCCCACCAAGACTCGGACA
TGCACACCATGCCCACGGCGGTCAGCCACCGCCCGACCTCGCATTCTTTC
GTGCCGTCTGCTTCTTTGGCCTCGACCTTGCCCTCCCACGCGGCCTCGAG
ACAGCGTGGGGGAGGGGGAGGAAGAACTGCAGGCGGGAAGCTCCCCTCGT
CCTCCCCCTCGTCCTCCCCCTCCTCTTGCCCCTCCTCCTTCATCCGCACG
CACCACCCTCTCGCCCTCGTCCACGTGGCAGCCTACAAGAAATCTTTTTC
CACCGCCGCCCGCGACGTGTGGACCCTCCTCGTCGCTGCCGGCCTCGACT
CGATCCTCCGTACCGATGCTTTGTCACACACCCTCCACGCACTGGGCACC
ACAGCCGGGTGCTTGACCGCACTAATGTCCCTCCTCCTCTTTGGTGCTAG
TGCGGGGGTGGGAGTTGCCGTGGTCTTGCCCGGTGCCCTGGCGTACATCT
TGGTAATGACGGCCTTGGAACCCCTGCTCGCCACGGTTAATGCGGCTTAC
GTGAGCTTCGCGGAGACCCCGGCTTTGGTGTCGCAGACCTTCCCGTTGAT
CTTCCACCGCTTGGATCGCATTGCGGAGGTGCGAAATTTTTGA back to topCoding sequence (CDS) from alignment at chr13:980812..983004- >NO13G03320.1 ID=NO13G03320.1|Name=NO13G03320.1|organism=Nannochloropsis oceanica|type=CDS|length=2193bp|location=Sequence derived from alignment at chr13:980812..983004- (Nannochloropsis oceanica) ATGTGGCTATCGTCCTCCGCGGTGCCTCCTCCGCCTTCGGGCGCGGGCCA TCACCACGACGACTATGCCCCTCTCCCTCTCCCTCCTCCCTCTCCCTCGG GCCACCACAAGGAACTGCCCTTCTCCCACGACGGCGATGAGGAAACCATC ACCGAGACTCTCTCTCCATATTGTTCGAACTCCCAACATGCAAATACTCC CAACTCGTGTTCAAACTCTTCCCCTGCCGCCTCCTCCTCCTCTTCCCCCT CCTCTTCCCCCTCCTCCTTCGTCCCCGGTGTGGGCATTATGAGCCTCCGT CGACCCCTCGCGTATAAGGACCGAGGTTTCACCGCCGTCTTTGCCTTGCA CGTCCTCACTTTGTTCCTCGTCCTGTCCACCGACAAAGAATTGTCTCCTC CGTCTTCCTCTTTTTCCCCATCACCACAAACACAAGGCGAGCAACCACCA ACGTATCACTTCTACCACACGGCCGCCCGTCTCCTCCTCTCCATCCTCGC TGGAGCTGCTCTGGCCTATTTTTTCATTCTCCGTGCAGTTTTTTACAATA AAAGTATCGGTGGTATTATCTCCCGCCGGCGACTGCTCCTCCATGCCTCC CACTTCTCCCTCGCCTCTCAAACCGTCCTCCTCTTCGTCCTCCTCTACTC CAATCCCTTTCCCCTACCCTTCCTCCTTCTCCTTCTCTTCCCTCTCTCCA TCAGCCTTTGGCACGAGCAACGCTATTGGCGTCGACGTGTACAAGAACAA GGAGAGTTCGTGGTTGTCCTGGGGGAAATGACCAGTGACATCCTCGCTCC CTCCCTCCCCCTCTGTTATGCTAGCCGGGGGATTCTCTTCCTCCAAACCT CCTTCCTCATACTATGGGCCATGGTCTTTGCCTCGGCCTTCTGCACCTCC GTCACAGAACCCTCTTCTACCACTGCTGCTATTCCTGCTACTGCTGCTGC TGCTGCCGCCACCAGGAGCAGAGGCACCCCGGCCTTCCTCCCCTTCGTCC TCCTCCTCCTTAACCTTTATTGGACCTCCCACCTGCTCCGCAAGACACTC CACGTCCTCCTCTCGGGCTCGGTGACCCGTTGGTTCTACAGTGCGCTCGA GGGAGGGGGGGAAGAAGAGAGGGAGGGAGGGAGGGACCGAAGGAGGACGA GAAGTAGCATCACCCAAGAAGCGGGAGGATTTGAATATGACCGGACCAAG AACCCGTTTTATGATGACGATGATGATGATCATGAGGAGAAGGAGGAACA GGGAGAGAATGACGTAGAAGGTGAGTTGCATAAGGGCTTTATGCTGTCGG AGCAGCAGCAGCAGCAGGAGGTTCAGCCAGGAAGGAAAATCAGGCAGCGA CGTGGTAGCCCCACAGGGATGACGGTTGACATTTACGGGGACGACGGGCC TGACGAGGACAGCAGCGACAGCCCTCCCTCCCCCCCGCCCTTCTCCTCCT CCAACTTGTCGGGGGAAGTCCTCCTGCATCACCTGGCCTGTGCCCTCAGC GTGTCCTTGGGCTCTCTGTGCCAGGCCGCTTTTTGTTGCCCCCTGGCCCA CGCGCTCTGGGCTTGGCAAGGCTACACGGTTTCCCACCAAGACTCGGACA TGCACACCATGCCCACGGCGGTCAGCCACCGCCCGACCTCGCATTCTTTC GTGCCGTCTGCTTCTTTGGCCTCGACCTTGCCCTCCCACGCGGCCTCGAG ACAGCGTGGGGGAGGGGGAGGAAGAACTGCAGGCGGGAAGCTCCCCTCGT CCTCCCCCTCGTCCTCCCCCTCCTCTTGCCCCTCCTCCTTCATCCGCACG CACCACCCTCTCGCCCTCGTCCACGTGGCAGCCTACAAGAAATCTTTTTC CACCGCCGCCCGCGACGTGTGGACCCTCCTCGTCGCTGCCGGCCTCGACT CGATCCTCCGTACCGATGCTTTGTCACACACCCTCCACGCACTGGGCACC ACAGCCGGGTGCTTGACCGCACTAATGTCCCTCCTCCTCTTTGGTGCTAG TGCGGGGGTGGGAGTTGCCGTGGTCTTGCCCGGTGCCCTGGCGTACATCT TGGTAATGACGGCCTTGGAACCCCTGCTCGCCACGGTTAATGCGGCTTAC GTGAGCTTCGCGGAGACCCCGGCTTTGGTGTCGCAGACCTTCCCGTTGAT CTTCCACCGCTTGGATCGCATTGCGGAGGTGCGAAATTTTTGA back to top
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