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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:609196..612134 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G02150.1 vs.
Match: EWM21878.1 (40s ribosomal protein s6 [Nannochloropsis gaditana]) HSP 1 Score: 406.4 bits (1043), Expect = 7.800e-110 Identity = 213/242 (88.02%), Postives = 223/242 (92.15%), Query Frame = 0
Query: 55 MKLNIANPSTGQQHVVEIDDEKRLRAFYDRRISQEVDGVHIGDEFKGYIFRISGGNDKQGFPMKQGVLTDQRVRLLLRKGLSCYRARRKGERKRKSVRGAIVGPDLSVLNLVVVKRGEEHVAGLTDSQVPRRLGPKRANKIRKLFNLSKEDDVTKFAISRTFENKKGKTVTKRPSIQRLVTPLTLQRKRQRLAAKKAATAKAKTEAAEYHRIFQQRLNERKESRRSAVSKRRSSRRASAKAE 297
MKLNIANP TGQQHVVEIDDEKRLRAFYDRRISQEVDG HIGDEFKGY+F+ISGGNDKQGFPMKQGVLTDQRVRLLLRKGLSCYRARRKGERKRKSVRGAIVGPDLSVLNLV+VKRGEE V GLTDS VPRRLGPKRAN IRKLFNLSK+ DVT + + R FENKKGKTV K+P IQRL+TPL LQ KR+RL AKKAAT KAK EAAEYHRIFQQRLNERKESRRSA+SKRRSSRRASAK E
Sbjct: 1 MKLNIANPQTGQQHVVEIDDEKRLRAFYDRRISQEVDGEHIGDEFKGYVFKISGGNDKQGFPMKQGVLTDQRVRLLLRKGLSCYRARRKGERKRKSVRGAIVGPDLSVLNLVLVKRGEEDVVGLTDSAVPRRLGPKRANNIRKLFNLSKDADVTTYPVERKFENKKGKTVVKKPKIQRLITPLRLQHKRRRLEAKKAATTKAKAEAAEYHRIFQQRLNERKESRRSAISKRRSSRRASAKVE 242
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G02150.1 ID=NO13G02150.1|Name=NO13G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2460bp TTTGATAAATATCTGCTCATGTTACTTTCTTTTCATTTCGGTTCCCTCCG GGCACTTGTTGCATGGAACTTACAACTCATTCCGATGTATAAGTGGAGCA CATTATAATGAGACTAAATTTTGGGTGTACACTGTGTAAACGGAAAATGT CAGCACCATGCCGGCTCCCATAAGGGTGCGGCTGTCGAGGGAGGAACGCC GGACGTTAACGGACGCGGAGGCGAGGGCGAAGACTGAGAGCCAGACACAA ATTCGGATTTTAGTGACAACGGCTACACTTGCAAATAGGAGGGACATGAG ACCCATGTAGTCGTAGACGTAGGGTTCTTCGACGCCGTCGCGGGCACTAA GAAGGTGAAAAGGAACGATCTGTGAGCGGTGGGGAATATGAGCAGAACGC GGAAAAGAATTGCCCCGGCTGCATATTTACCGTAGAGATAGGTAGGGAAA GACTTGTTTGGACCGCCGTGGGTCGGCATTCTGGGGCTGTGGAGCCGCGT GGAACGAGACGTGCTGCTGCATTTTGTCTCCACGACCCGACCTTCGCCTC TATAGCGTTTTTGCGTACCTGGAGAACCTTTCTCCTTGTCCTGGTCGTGG TGGCTAAATGTGTAATATTTTCTGCTGTAGATATACATATGTTGGTGTGG TGCATGTGAGTGTGGGTACAAACTTAAATGTTGCCTGCTTAAACGCACCT GAAGTATTGAGGCAACGGGAACAGGTCGGAGAGATGGCACGACGTCGCTA GCACAGGCCTGTGTTCTCTCTCGTGCTCCACCCTTCGCTTCCACACAAGC ATCAGAGAAGAACTTGTCACAATGTCTTTGTCCCCACCTTCCTCATGCCC GTAGGGCTCAAATTAATTCTGTGCGTCCATCCTCACCCATCCCCTTCAAT GTAGGCCCCAGAGGTGCAGGGACCTGATCAGGCTGTCGGTTGTGGACGGC TGTGAGAAGCCTCGCCCCCCCCACTTCCGCCCTCACTTGTTTTCGTCCAA GAGGAAAGAGGGAACGGCGTTGGCCTTGATCATGGACATCCAGGAGGACT GTGCATCAGACCTAGGCGAATGCCGTCCATGGGCGCATTTAAATTTCTGC GTCGTTGGATGGAGAGAGACTATGGAGGAGCACTCCGTCATCAGCACCCA GCCACCATCCTTACGCTAACGCCATGCCCTGTCCCCCGTACACATCAAAC AGGAGGCCGTCTCATTTCGGACAACGCCGTTATGAAGCTCAATATTGCCA ACCCTTCAACGGGCCAGCAACACGTGGTAGAGATTGACGATGAGAAGCGT CTGCGCGCGTTCTATGACCGACGCATCTCCCAAGAGGTGGATGGCGTGCA CATCGGAGACGAGTTTAAGGGCTACATCTTCCGAATTTCCGGTGGCAACG ACAAGCAAGGTTTTCCCATGAAGCAGGGCGTGCTTACGGATCAGCGTGTC CGCCTCCTCCTCCGTAAGGGTCTCTCCTGCTATCGCGCGCGCCGAAAGGG CGAGCGTAAGCGCAAGTCCGTGCGTGGTGCCATCGTGGGGCCCGACCTTT CGGTCCTGAACCTAGTAGTGGTGAAGCGAGGGGAGGAGCACGTGGCCGGC TTGACCGACAGCCAGGTGCCGCGTCGTCTGGGCCCAAAGCGCGCTAATAA GATACGCAAGCTCTTCAACTTGTCTAAGGAGGATGATGTGACCAAGTTCG CAATCTCCCGCACATTCGAGAACAAGAAGGGCAAGACCGTTACTAAGCGG CCCAGCATCCAGCGACTTGTCACGCCCCTCACCCTGCAGCGCAAGCGACA GCGTTTGGCAGCTAAGAAGGCAGCGACTGCCAAGGCTAAGACAGAGGCAG CTGAATACCATCGTATCTTCCAGCAGCGCCTCAACGAGCGTAAGGAGTCT CGTCGTTCTGCCGTTTCCAAGCGTCGGTCCTCTAGACGTGCCTCGGCCAA GGCCGAGTAAGACTCAGACTTGACTTGCGATGTGGTGCTGACTTGAAAGA AAGAAGGATAGACTTTTGGGTAGGGTGTTACGCGTCATCGATCACGGGGT TTTGATTTTGGTCGGGAATAGAACTGGGACACGCGCTTGATCAGAAATAG AGAAGAGACGCTGGGCATCAACATTGCAGGACATCAACAGCAAGAGAAGA GTGAGGTGGGAGGGCCAATCGGGAACGAAGAGGCGCTGGTTGTTAGTGAT GGCTTTTTCGTTTTCTCAAGGTCGGAAGGAACATGATGGGGTGCGAGAGT GGCTTGGCGTGCTCAACTGGAGCCCTGGGGGTACTAAAGGCTATACGAGA CGACAAAATCCAGACTAGTACACCATTTACAACAGCGGCAGCTGCAGTAG CAACAACAACAACGACGACAACAACAAGCAGAACAACAAAAAGAAGAAGA TGAAGAACAAGAACAAGAACAAGAACAACAACAACAACAACATCAACATC AACAACACAA back to topprotein sequence of NO13G02150.1 >NO13G02150.1-protein ID=NO13G02150.1-protein|Name=NO13G02150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp MPSMGAFKFLRRWMERDYGGALRHQHPATILTLTPCPVPRTHQTGGRLIS DNAVMKLNIANPSTGQQHVVEIDDEKRLRAFYDRRISQEVDGVHIGDEFK GYIFRISGGNDKQGFPMKQGVLTDQRVRLLLRKGLSCYRARRKGERKRKS VRGAIVGPDLSVLNLVVVKRGEEHVAGLTDSQVPRRLGPKRANKIRKLFN LSKEDDVTKFAISRTFENKKGKTVTKRPSIQRLVTPLTLQRKRQRLAAKK AATAKAKTEAAEYHRIFQQRLNERKESRRSAVSKRRSSRRASAKAE* back to topmRNA from alignment at chr13:609196..612134- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G02150.1 ID=NO13G02150.1|Name=NO13G02150.1|organism=Nannochloropsis oceanica|type=mRNA|length=2939bp|location=Sequence derived from alignment at chr13:609196..612134- (Nannochloropsis oceanica) TTTGATAAATATCTGCTCATGTTACTTTCTTTTCATTTCGGTTCCCTCCG
GGCACTTGTTGCATGGAACTTACAACTCATTCCGATGTATAAGTGGAGCA
CATTATAATGAGACTAAATTTTGGGTGTACACTGTGTAAACGGAAAATGT
CAGCACCATGCCGGCTCCCATAAGGGTGCGGCTGTCGAGGGAGGAACGCC
GGACGTTAACGGACGCGGAGGCGAGGGCGAAGACTGAGAGCCAGACACAA
ATTCGGATTTTAGTGACAACGGCTACACTTGCAAATAGGAGGGACATGAG
ACCCATGTAGTCGTAGACGTAGGGTTCTTCGACGCCGTCGCGGGCACTAA
GAAGGTGAAAAGGAACGATCTGTGAGCGGTGGGGAATATGAGCAGAACGC
GGAAAAGAATTGCCCCGGCTGCATATTTACCGTAGAGATAGGTAGGGAAA
GACTTGTTTGGACCGCCGTGGGTCGGCATTCTGGGGCTGTGGAGCCGCGT
GGAACGAGACGTGCTGCTGCATTTTGTCTCCACGACCCGACCTTCGCCTC
TATAGCGTTTTTGCGTACCTGGAGAACCTTTCTCCTTGTCCTGGTCGTGG
TGGCTAAATGTGTAATATTTTCTGCTGTAGATATACATATGTTGGTGTGG
TGCATGTGAGTGTGGGTACAAACTTAAATGTTGCCTGCTTAAACGCACCT
GAAGTATTGAGGCAACGGGAACAGGTCGGAGAGATGGCACGACGTCGCTA
GCACAGGCCTGTGTTCTCTCTCGTGCTCCACCCTTCGCTTCCACACAAGC
ATCAGAGAAGAACTTGTCACAATGTCTTTGTCCCCACCTTCCTCATGCCC
GTAGGGCTCAAATTAATTCTGTGCGTCCATCCTCACCCATCCCCTTCAAT
GTAGGCCCCAGAGGTGCAGGGACCTGATCAGGCTGTCGGTTGTGGACGGC
TGTGAGAAGCCTCGCCCCCCCCACTTCCGCCCTCACTTGTTTTCGTCCAA
GAGGAAAGAGGGAACGGCGTTGGCCTTGATCATGGACATCCAGGAGGACT
GTGCATCAGACCTAGGCGAATGCCGTCCATGGGCGCATTTAAATTTCTGC
GTCGTTGGATGGAGAGAGACTATGGAGGAGCACTCCGTCATCAGCACCCA
GCCACCATCCTTACGCTAACGCCATGCCCTGTCCCCCGTACACATCAAAC
AGGAGGCCGTCTCATTTCGGACAACGCCGTTATGAAGGTAAGCATGCGTC
TTGTGTGCGTCTGCAATATCTCCTCCATTTCTTCCCTCTCATGGGTAGAG
GTATGACCACTCACTCACTTGCTGCCCTCCCTCCCTATCCTTTCCTCGTC
CACAGCTCAATATTGCCAACCCTTCAACGGGCCAGCAACACGTGGTAGAG
ATTGACGATGAGAAGCGTCTGCGCGCGTTCTATGACCGACGCATCTCCCA
AGAGGTGGATGGCGTGCACATCGGAGACGAGTTTAAGGGCTACATCTTCC
GAATTTCCGGTGGCAACGACAAGCAAGGTTTTCCCATGAAGCAGGGCGTG
CTTACGGATCAGCGTGTCCGCCTCCTCCTCCGTAAGGGTCTCTCCTGCTA
TCGCGCGCGCCGAAAGGGCGAGCGTAAGCGCAAGTCCGTGCGTGGTGCCA
TCGTGGGGCCCGACCTTTCGGTCCTGAACCTAGTAGTGGTGAAGCGAGGG
GAGGAGCACGTGGCCGGCTTGACCGACAGCCAGGTGCCGCGTCGTCTGGG
CCCAAAGCGCGCTAATAAGATACGCAAGCTCTTCAACTTGTCTAAGGAGG
ATGATGTGACCAAGTTCGCAATCTCCCGCACATTCGAGAACAAGAAGGGC
AAGACCGTTACTAAGCGGCCCAGCATCCAGCGACTTGTCACGCCCCTCAC
CCTGCAGGTTCGCGACTGGGATGGAGAAAGAGAAGAACAAGGAGGAGGAA
GAGAGGGAGGAGGGTTGAAAAGATGATAAAACACCATGTCACAGACCTGT
TCTGAAAACCTGGGGGGCGGAGGGGGGACTCAAGGAAGGAGGGACGTGGA
AGGAAGAGGGGTTGAATAAATCTCTCTTCTTTCAACCCTCCTTTGCCTCC
TTCGTCTGCTTCCCGCTACGTGTGTGACACAACATGCACCACTATCTGAT
CAACACTGTGCATCCGCATTCAACACATATGCATCGCGCTCTGATCGAAT
GAATGATCCCTGCTGTTACTCACTCGTTTTCCCTTTTTCCGCCCTTCGCC
CCACTCAAACACTGACAGCGCAAGCGACAGCGTTTGGCAGCTAAGAAGGC
AGCGACTGCCAAGGCTAAGACAGAGGCAGCTGAATACCATCGTATCTTCC
AGCAGCGCCTCAACGAGCGTAAGGAGTCTCGTCGTTCTGCCGTTTCCAAG
CGTCGGTCCTCTAGACGTGCCTCGGCCAAGGCCGAGTAAGACTCAGACTT
GACTTGCGATGTGGTGCTGACTTGAAAGAAAGAAGGATAGACTTTTGGGT
AGGGTGTTACGCGTCATCGATCACGGGGTTTTGATTTTGGTCGGGAATAG
AACTGGGACACGCGCTTGATCAGAAATAGAGAAGAGACGCTGGGCATCAA
CATTGCAGGACATCAACAGCAAGAGAAGAGTGAGGTGGGAGGGCCAATCG
GGAACGAAGAGGCGCTGGTTGTTAGTGATGGCTTTTTCGTTTTCTCAAGG
TCGGAAGGAACATGATGGGGTGCGAGAGTGGCTTGGCGTGCTCAACTGGA
GCCCTGGGGGTACTAAAGGCTATACGAGACGACAAAATCCAGACTAGTAC
ACCATTTACAACAGCGGCAGCTGCAGTAGCAACAACAACAACGACGACAA
CAACAAGCAGAACAACAAAAAGAAGAAGATGAAGAACAAGAACAAGAACA
AGAACAACAACAACAACAACATCAACATCAACAACACAA back to topCoding sequence (CDS) from alignment at chr13:609196..612134- >NO13G02150.1 ID=NO13G02150.1|Name=NO13G02150.1|organism=Nannochloropsis oceanica|type=CDS|length=891bp|location=Sequence derived from alignment at chr13:609196..612134- (Nannochloropsis oceanica) ATGCCGTCCATGGGCGCATTTAAATTTCTGCGTCGTTGGATGGAGAGAGA CTATGGAGGAGCACTCCGTCATCAGCACCCAGCCACCATCCTTACGCTAA CGCCATGCCCTGTCCCCCGTACACATCAAACAGGAGGCCGTCTCATTTCG GACAACGCCGTTATGAAGCTCAATATTGCCAACCCTTCAACGGGCCAGCA ACACGTGGTAGAGATTGACGATGAGAAGCGTCTGCGCGCGTTCTATGACC GACGCATCTCCCAAGAGGTGGATGGCGTGCACATCGGAGACGAGTTTAAG GGCTACATCTTCCGAATTTCCGGTGGCAACGACAAGCAAGGTTTTCCCAT GAAGCAGGGCGTGCTTACGGATCAGCGTGTCCGCCTCCTCCTCCGTAAGG GTCTCTCCTGCTATCGCGCGCGCCGAAAGGGCGAGCGTAAGCGCAAGTCC GTGCGTGGTGCCATCGTGGGGCCCGACCTTTCGGTCCTGAACCTAGTAGT GGTGAAGCGAGGGGAGGAGCACGTGGCCGGCTTGACCGACAGCCAGGTGC CGCGTCGTCTGGGCCCAAAGCGCGCTAATAAGATACGCAAGCTCTTCAAC TTGTCTAAGGAGGATGATGTGACCAAGTTCGCAATCTCCCGCACATTCGA GAACAAGAAGGGCAAGACCGTTACTAAGCGGCCCAGCATCCAGCGACTTG TCACGCCCCTCACCCTGCAGCGCAAGCGACAGCGTTTGGCAGCTAAGAAG GCAGCGACTGCCAAGGCTAAGACAGAGGCAGCTGAATACCATCGTATCTT CCAGCAGCGCCTCAACGAGCGTAAGGAGTCTCGTCGTTCTGCCGTTTCCA AGCGTCGGTCCTCTAGACGTGCCTCGGCCAAGGCCGAGTAA back to top
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