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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:536062..537951 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01830.1 vs.
Match: EWM21824.1 (superoxide dismutase [Nannochloropsis gaditana]) HSP 1 Score: 430.6 bits (1106), Expect = 3.100e-117 Identity = 207/235 (88.09%), Postives = 218/235 (92.77%), Query Frame = 0
Query: 1 MKTYCVVLGAASLAVASHAFLMGNPLKAAPKAAACSSTTCMAVTLPALPYADTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAAKGKNQGLFNNAAQVWNHNFYWNCLKPNGGGVPTGKIAALIDRDLGGYEAFRKQFAADSNGNFGSGWTWLAMKGDKLQIVKTSNADVPITDGMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNSNLA 236
MKTYC V GA SLAVASHAF++G+PL KA A SST MAV LP LP+ DTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAAKGKNQGLFNNAAQVWNHNFYWNC+KPNGGG PTGK+AALIDRDLGG+EAFRKQFAADSNGNFGSGWTWLAM GDKL+IVKTSNAD+P+T GMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVN+NLA
Sbjct: 1 MKTYCAVFGAVSLAVASHAFMVGSPLTGVSKAPASSSTVRMAVALPPLPFEDTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAAKGKNQGLFNNAAQVWNHNFYWNCIKPNGGGKPTGKVAALIDRDLGGFEAFRKQFAADSNGNFGSGWTWLAMDGDKLKIVKTSNADLPLTQGMTPLLVIDVWEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNANLA 235
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01830.1 ID=NO13G01830.1|Name=NO13G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp ACACACAGCAATCTATCTATCAACATCATGAAGACCTACTGCGTCGTCCT CGGGGCCGCATCCCTTGCCGTGGCAAGCCACGCCTTTCTGATGGGCAACC CCTTGAAAGCTGCACCCAAGGCTGCTGCTTGCTCATCCACCACCTGCATG GCCGTCACCCTGCCGGCCCTTCCCTACGCCGACACCGCCCTGGAACCCTT GATCTCCAAGAGGACCTTGGACATCCACCATGGGAAGCACCACGCCAAGT ACGTGACGGTGACGAACGAGATGATCAAGGGCACCGACCTCGAGAATGCC TCGTTGGAGGAGATCGTTAAGGCGGCTAAGGGCAAGAACCAGGGTCTGTT CAACAACGCCGCGCAGGTCTGGAACCACAACTTTTACTGGAACTGCCTCA AGCCCAATGGTGGGGGCGTGCCCACGGGCAAGATTGCAGCCTTGATTGAT CGGGACTTGGGGGGTTACGAGGCTTTCAGGAAGCAGTTCGCGGCAGACTC GAACGGGAACTTCGGAAGTGGGTGGACCTGGTTGGCGATGAAGGGTGACA AGCTTCAGATCGTCAAGACTAGCAATGCCGATGTTCCCATTACGGACGGG ATGACGCCCCTGCTGGTGATTGATGTGTGGGAGCACGCGTATTACCTGGA CGTGCAGAACGTGCGCGCGCAGTACGTGGACAACTTTCTCGATAAGCTCG TCAACTGGGACTTCGTCAATTCCAACCTTGCCTAAATCAAGAGGATGGTG ACTCGCTAGTCCCGTCTCTTCTCTCGCTTCTTCTACGGAAGGAGGAGGGA GTATGAGGAAGGAGGACGAAGACCCGAATGACTCTTGAAGACACAAGGAA TGGAGGAGGGAAGGAGGAAATGCATCTGAGGGAGCTGATGTTTCTCATAA AATGTGTGGCGGCATGAAGAAGAATATGTATTTGCCCCCCCTTTGTGCGT GCCGGAATGACTGAAGGACTTTTTTGGGAATGTTACAGACTAAAGCGATT CTGGAGTGAGACTAGGGTGAAAGTTAGGCTTAAGGCATTGAGATGTAACG GGCAAAGCGGTGGATGACGGACAAAAAGAGAAATGAGAAAGAGATGCCTC GAGCATTTAGTAG back to topprotein sequence of NO13G01830.1 >NO13G01830.1-protein ID=NO13G01830.1-protein|Name=NO13G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp MKTYCVVLGAASLAVASHAFLMGNPLKAAPKAAACSSTTCMAVTLPALPY ADTALEPLISKRTLDIHHGKHHAKYVTVTNEMIKGTDLENASLEEIVKAA KGKNQGLFNNAAQVWNHNFYWNCLKPNGGGVPTGKIAALIDRDLGGYEAF RKQFAADSNGNFGSGWTWLAMKGDKLQIVKTSNADVPITDGMTPLLVIDV WEHAYYLDVQNVRAQYVDNFLDKLVNWDFVNSNLA* back to topmRNA from alignment at chr13:536062..537951+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01830.1 ID=NO13G01830.1|Name=NO13G01830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1890bp|location=Sequence derived from alignment at chr13:536062..537951+ (Nannochloropsis oceanica) ACACACAGCAATCTATCTATCAACATCATGAAGACCTACTGCGTCGTCCT
CGGGGCCGCATCCCTTGCCGTGGCAAGCCACGCCTTTCTGATGGGCAACC
CCTTGAAAGCTGCACCCAAGGCTGCTGCTTGCTCATCCACCACCTGCATG
GCCGTCACCCTGCCGGCCCTTCCCTGTGAGTGCAACCTTGTTACTGCTGA
CAGGGATTATTACAGAGCATGTCCTCGTACTTATTCTGGAACAAAAGCGT
GATTCAGTGATCCGTCCCGATCTCTAATTAGATGATCAGGCTTATCTCCA
GCTCATATATTTTAATCATGTGACACAGATACCTCATGTTCCCCCTTGCC
CTCCCGACCTTCCCTTTCTCGACCTTCCCTCCCCTTCCTCTAGACGCCGA
CACCGCCCTGGAACCCTTGATCTCCAAGAGGACCTTGGACATCCACCATG
GGAAGCACCACGCCAAGTACGTGACGGTGACGAACGAGATGATCAAGGGC
ACCGACCTCGAGAATGCCTCGTTGGAGGAGATCGTTAAGGCGGCTAAGGG
TGAGTTGAAAGGAGGTGGGAGTTAAACGGAAGGAGGGAGCAAGAGCTCAG
ACGGAATGCTTATGGAGAAGCAAAAGAGGGCATAAAATAGTTGATTTCCT
CAGTGATGATACAATTTCCTCTCAGCGTACGACAAAAAATTTCTCGCCCC
CGTATTATTTCCTCGTAGGCAAGAACCAGGGTCTGTTCAACAACGCCGCG
CAGGTCTGGAACCACAACTTTTACTGGAACTGCCTCAAGCCCAATGGTGG
GGGCGTGCCCACGGGCAAGATTGCAGCCTTGATTGATCGGGACTTGGGGG
GTTACGAGGCTTTCAGGTAAGATATGCAAACACAGAGTGGGATAGTGAAT
GAACGATAGCCTCTCGGTTGTTCTTCATTCGGGTTGCCTTCTTGCCTTTA
TGTTGCCGTCATCCACCGTCGACAAGAGATAATGAAGGTGAATGGATGAT
AAGCTCGTCTTCCTTTGTGCCTTCCTTCTTCCACCCCACATCCCTGGACA
AAACCGCAAAAAAAGAATGAAGCAACGTGAATTCTCACAAAATCGACACA
CCCATACATTGCATAACTAACTTGCAGGAAGCAGTTCGCGGCAGACTCGA
ACGGGAACTTCGGAAGTGGGTGGACCTGGTTGGCGATGAAGGGTGACAAG
CTTCAGATCGTCAAGACTAGCAATGCCGATGTTCCCATTACGGACGGGAT
GGTGAGTGCTTGGGAAGGGCAAGTGGAAAAAATATATCATAATTCGCTAA
ACTGCTGACGATTGAAGTTCTCGTAAATTACCATATATTCATTCTTGTTT
TTCCCCTCTCCTCCCTCCCTCCCGCCTAAGACGCCCCTGCTGGTGATTGA
TGTGTGGGAGCACGCGTATTACCTGGACGTGCAGAACGTGCGCGCGCAGT
ACGTGGACAACTTTCTCGATAAGCTCGTCAACTGGGACTTCGTCAATTCC
AACCTTGCCTAAATCAAGAGGATGGTGACTCGCTAGTCCCGTCTCTTCTC
TCGCTTCTTCTACGGAAGGAGGAGGGAGTATGAGGAAGGAGGACGAAGAC
CCGAATGACTCTTGAAGACACAAGGAATGGAGGAGGGAAGGAGGAAATGC
ATCTGAGGGAGCTGATGTTTCTCATAAAATGTGTGGCGGCATGAAGAAGA
ATATGTATTTGCCCCCCCTTTGTGCGTGCCGGAATGACTGAAGGACTTTT
TTGGGAATGTTACAGACTAAAGCGATTCTGGAGTGAGACTAGGGTGAAAG
TTAGGCTTAAGGCATTGAGATGTAACGGGCAAAGCGGTGGATGACGGACA
AAAAGAGAAATGAGAAAGAGATGCCTCGAGCATTTAGTAG back to topCoding sequence (CDS) from alignment at chr13:536062..537951+ >NO13G01830.1 ID=NO13G01830.1|Name=NO13G01830.1|organism=Nannochloropsis oceanica|type=CDS|length=708bp|location=Sequence derived from alignment at chr13:536062..537951+ (Nannochloropsis oceanica) ATGAAGACCTACTGCGTCGTCCTCGGGGCCGCATCCCTTGCCGTGGCAAG CCACGCCTTTCTGATGGGCAACCCCTTGAAAGCTGCACCCAAGGCTGCTG CTTGCTCATCCACCACCTGCATGGCCGTCACCCTGCCGGCCCTTCCCTAC GCCGACACCGCCCTGGAACCCTTGATCTCCAAGAGGACCTTGGACATCCA CCATGGGAAGCACCACGCCAAGTACGTGACGGTGACGAACGAGATGATCA AGGGCACCGACCTCGAGAATGCCTCGTTGGAGGAGATCGTTAAGGCGGCT AAGGGCAAGAACCAGGGTCTGTTCAACAACGCCGCGCAGGTCTGGAACCA CAACTTTTACTGGAACTGCCTCAAGCCCAATGGTGGGGGCGTGCCCACGG GCAAGATTGCAGCCTTGATTGATCGGGACTTGGGGGGTTACGAGGCTTTC AGGAAGCAGTTCGCGGCAGACTCGAACGGGAACTTCGGAAGTGGGTGGAC CTGGTTGGCGATGAAGGGTGACAAGCTTCAGATCGTCAAGACTAGCAATG CCGATGTTCCCATTACGGACGGGATGACGCCCCTGCTGGTGATTGATGTG TGGGAGCACGCGTATTACCTGGACGTGCAGAACGTGCGCGCGCAGTACGT GGACAACTTTCTCGATAAGCTCGTCAACTGGGACTTCGTCAATTCCAACC TTGCCTAA back to top
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