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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:402930..406327 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G01330.1 vs.
Match: EWM21797.1 (hypothetical protein Naga_100065g18 [Nannochloropsis gaditana]) HSP 1 Score: 148.3 bits (373), Expect = 8.600e-32 Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 0
Query: 547 TVNRHSRRKYSMDPASFVIVPTPKILLGSWFDKRPNRLCRTPGCRNRYRTPGYLCESCGGGKCQVKGCRRLHQGKQGLSDLFFCRAHRNVYAALMMKDGG 647
T + +RK S+D F IVP PK+L GS +KR NR CRTP C NRYRTPGYLCE+CGGG+CQ +GC RLHQGKQGLS+LFFCRAHRN+YA L + G
Sbjct: 322 TKAQRRKRKCSLDSVVFDIVPIPKVLPGSLLEKRRNRSCRTPHCTNRYRTPGYLCEACGGGRCQARGCERLHQGKQGLSNLFFCRAHRNIYARLQKEGKG 421
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G01330.1 ID=NO13G01330.1|Name=NO13G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=3296bp CGTGGTCCGGAGGCTCAGCGACCCTCCGGTCCCTTGGCCCAGCGATCCTC CGGCCGCAGTCTACTAGATGAAGGGCTCGCGCGTTCACGTTCAATGAATT TGCATGCCCCGTTGACCGCGAAAACAACCACATATGAAAATACAAACAGA TGGTACCTTCTCGACTTCTGTCGACCCCTTCTTGTGCCGACAACCACTCC TCCCCCGCTGCTGGTGCCACCTCTTCCCTTTACGAGAATGACAATGCCTT TTTGGAAGCCTCTCTCGATGCCACTGACATCCCGGCCAGTCCGGACCCTG TAAAGGCTGCGGGACACTGCCAGTCCCCTCACCAAGCAGAACAGCAGCCC CCAGTCAGTTATGGGCCACCCCAGCAGCACCAGCACCAGCAGCAGCAAGA TGTATCAGAACAAGCCAAAGGGGTGGCGATGCCTGACGATTCATGCGACT TCTTGCTGCATATTTCAGACTCCCCTTTCTCCCGCCTTCGGGTCCGAGGA GGGGTCGCCTGTACCAGAGGCAGAGGGGATGATGCAGGTGGTATCGGGGC CGACGAATTTGCCAGCACGTGCATGAGTCCAACCGCGGTTATTGGAGATC CTATCGAATCGACGATGATGGAGCTCAACTTCCTGGCGGACGCCGTGGGC CATCTGGAGGGCGTGGATGTGAACATGCTTGCTACACACGCAACTTGCGG CTCAGGGCACAGTCTGTATGCCTTTCCCCTGGATAGAGCAGAAGGCGAAC GACAACCCTCCCCATATTCGTATCACCCCGAGCACCAGCACAAGTACAAG CAGACCCAGCATCGTGCCGATAGCTATTCATTTTCCCCGCGACCCCACCA TGGTCAACAAGAGCGGCAGCAGCAAAAGCATTATTTGTCTGACGCTTCCC ATTACATGGCACATACGAACCAAGTTTCCTCTGTGGAAATAAACAGCGAA AGGCAAGGCCTCGACTCCTACCACCACCAGCACCACCAGCACCACCAGCA GCATCACCAGCAACCATATTATCAGCGCGATGCAAGCACCTCCATTGCCA ATAGCATTGAGAAGACAATCTTGCCTTCCTTCTCATCTCATCCTCATCCC CTTAAGCCTCACTGCCAACACCACCAGCACCATCTGCACGAGCGATCCTG CACCTTGAAAGCTGATGTGAACCCCGCCCCTATCACCTCCCCGTGTTGCC TCTATCGCCACGGCAATACCACAGATAGCTTACACCCGCACATTAACAGC TCTTGCAACATCAATGCGGCAGGCTGTATCACCAATCGAGCCTCCGTGTT GTACGACGATAAGGGGGAGGAAGAGGTTGCCATCGGCAGCTGCAGTAGCA CCTGCAGCACCTGCAGCGGTAGCAGCAGCATCAACGGTAGTGAGGAGGAG CTGCGCTTGCTTACGACGGAAAATTATGAAACTCATTTTGCGTCGAGCGC GGGAGCGGAAGCCTACATAGGCTCGAGTGGTGGGATTTCTTCTCCCTCTT TGACCACTTCTGAAGAGGATGATGAGGAGTTGCCGCATCATCATTCTCTG CCCGCCACCTCGAGGATCAGGCGCAATGCTGCCATTGTAGCAGCTGCTGC TCTTGCCGCAGACTCGGGCAGCAGGAGCCGGAGGAGGTCGGTCCATGTAG AGGGGTATAGCAGCACCAGGAGTAGCATCACCGGCGACAGCAGCAGCTCT TCCACTGCCACCTTCATTCTCCCTTTCCATCCCACCACCACCGCAAGCAG CGGAGGGATAGGGGGAGGGTACTGGCCCCCCCTCAAGACGGTCAATCGTC ATAGTCGTCGGAAATATTCGATGGACCCAGCCAGTTTTGTCATCGTTCCC ACCCCCAAGATACTACTCGGGAGCTGGTTTGATAAGCGGCCAAACCGTCT GTGTCGGACACCTGGGTGTAGGAATCGGTATAGAACTCCTGGATACTTGT GTGAGTCTTGTGGGGGAGGAAAGTGTCAAGTAAAGGGGTGTAGACGCTTG CATCAGGGGAAGCAGGGGTTGTCGGATCTGTTCTTTTGTCGGGCACATCG GAACGTGTACGCGGCGTTGATGATGAAGGATGGGGGGGATGCGCGGTGGA GGAACAGGAACGAGAGAAAGAGCAGGAGCAGGAGCAGGAGCTGGAGCTGG AGCTGGGGCGAGAAATGACGGCATGAGTGGAGGAAGTGCATGCCGCTGCC TTTTTAAAAGGTGTACGTGTTCTGTGCACATTCGAGCCCAAGCAACCAAA GTCTCCCCCTCCACACCACCTCCTTCCCTCCTGCCCTAATACCTTGGGTG GACGCTTGGGGAGGTTTCCTTCTATGTATGTATATATGTGCTCGTGGCGT TGTGTGTGTCCATGAATGAGCAAGATAGGATTAAATCAAGCCGGGATGCT TGAAGAAATCCTCGTCTCACTCCACCTACCGGATTAAATGACTGAGTTGA TCACGGGTAAATAACAAACGAATATCCTCACGAATTAAAAGACAGCATGT GCCCTCTAATGTCTCACTCCGTTTCCACCAGTTAGAGACGGCATATATAT GAATTAGGTTAATCGCCACTTAAGGCGATGCTTACCCGCCATAAAGGTTC AGTAACCGCAACTGCGACAATAGTTTTCTACCAGATTGCATGAGTAGTAG AGAAGAAAAAACCGAATTCGAGCTAGCAGAATGATCACAATAAAGCATCT TGCGGTAGCGATGCAATAGAATATAAGGAAAACAAATCCTGATCTTGAGT GCCTGTGTATGGTGCGGAGAAGAAGGAGGTCCTTCTATACCTTATTGTGC GTACAGAATATCCCATCTGCAGGAAGATGGCGCGCATAAGGGGGGAAGGG GAGGGAAAGAAGGCAGAGAGAAAGAGAGAAGGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAATTGTAGAATGCCTTATGTTTTTGAAT GAGCCCTAAAACCGTCAAGCAAATCCTTATACTTTTGAAAAATAATATGT GTACCCAAAATCTTGCCCTCAGGAAAAAGACAAGAAGATGAGAAAGAGAA AGCGAGAAAGAGAAAGGGGTCGTCAAAGAGGAATAAAGCGAGACATGAAG ATACAGAAATCTAGAAAGAAGCATACTCTTTCCTCTATTTTTTGTAAGGA AATATGATGCGATATGCCTGTCCGGTCCCCATCGACCCGCCAAGAGATGC GAATGAAAGAAATGAGATTGTAATGATGGGCATCCGAACCACCTTATCAA TCATTTTCTCATTGAATATAAAAACAGAATGCGACATACGTGAGAT back to topprotein sequence of NO13G01330.1 >NO13G01330.1-protein ID=NO13G01330.1-protein|Name=NO13G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=673bp MVPSRLLSTPSCADNHSSPAAGATSSLYENDNAFLEASLDATDIPASPDP VKAAGHCQSPHQAEQQPPVSYGPPQQHQHQQQQDVSEQAKGVAMPDDSCD FLLHISDSPFSRLRVRGGVACTRGRGDDAGGIGADEFASTCMSPTAVIGD PIESTMMELNFLADAVGHLEGVDVNMLATHATCGSGHSLYAFPLDRAEGE RQPSPYSYHPEHQHKYKQTQHRADSYSFSPRPHHGQQERQQQKHYLSDAS HYMAHTNQVSSVEINSERQGLDSYHHQHHQHHQQHHQQPYYQRDASTSIA NSIEKTILPSFSSHPHPLKPHCQHHQHHLHERSCTLKADVNPAPITSPCC LYRHGNTTDSLHPHINSSCNINAAGCITNRASVLYDDKGEEEVAIGSCSS TCSTCSGSSSINGSEEELRLLTTENYETHFASSAGAEAYIGSSGGISSPS LTTSEEDDEELPHHHSLPATSRIRRNAAIVAAAALAADSGSRSRRRSVHV EGYSSTRSSITGDSSSSSTATFILPFHPTTTASSGGIGGGYWPPLKTVNR HSRRKYSMDPASFVIVPTPKILLGSWFDKRPNRLCRTPGCRNRYRTPGYL CESCGGGKCQVKGCRRLHQGKQGLSDLFFCRAHRNVYAALMMKDGGDARW RNRNERKSRSRSRSWSWSWGEK* back to topmRNA from alignment at chr13:402930..406327+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G01330.1 ID=NO13G01330.1|Name=NO13G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=3398bp|location=Sequence derived from alignment at chr13:402930..406327+ (Nannochloropsis oceanica) CGTGGTCCGGAGGCTCAGCGACCCTCCGGTCCCTTGGCCCAGCGATCCTC
CGGCCGCAGTCTACTAGATGAAGGGCTCGCGCGTTCACGTTCAATGAATT
TGCATGCCCCGTTGACCGCGAAAACAACCACATATGAAAATACAAACAGA
TGGTACCTTCTCGACTTCTGTCGACCCCTTCTTGTGCCGACAACCACTCC
TCCCCCGCTGCTGGTGCCACCTCTTCCCTTTACGAGAATGACAATGCCTT
TTTGGAAGCCTCTCTCGATGCCACTGACATCCCGGCCAGTCCGGACCCTG
TAAAGGCTGCGGGACACTGCCAGTCCCCTCACCAAGCAGAACAGCAGCCC
CCAGTCAGTTATGGGCCACCCCAGCAGCACCAGCACCAGCAGCAGCAAGA
TGTATCAGAACAAGCCAAAGGGGTGGCGATGCCTGACGATTCATGCGACT
TCTTGCTGCATATTTCAGACTCCCCTTTCTCCCGCCTTCGGGTCCGAGGA
GGGGTCGCCTGTACCAGAGGCAGAGGGGATGATGCAGGTGGTATCGGGGC
CGACGAATTTGCCAGCACGTGCATGAGTCCAACCGCGGTTATTGGAGATC
CTATCGAATCGACGATGATGGAGGTAAATTATGTTACTGGGTGCATGTAT
GGGTGTATTCGGTACATTCTGATCTCTACTGTCGATCCAGCAGTCACTAA
CATCTTACACCTACATGAACCACAGCTCAACTTCCTGGCGGACGCCGTGG
GCCATCTGGAGGGCGTGGATGTGAACATGCTTGCTACACACGCAACTTGC
GGCTCAGGGCACAGTCTGTATGCCTTTCCCCTGGATAGAGCAGAAGGCGA
ACGACAACCCTCCCCATATTCGTATCACCCCGAGCACCAGCACAAGTACA
AGCAGACCCAGCATCGTGCCGATAGCTATTCATTTTCCCCGCGACCCCAC
CATGGTCAACAAGAGCGGCAGCAGCAAAAGCATTATTTGTCTGACGCTTC
CCATTACATGGCACATACGAACCAAGTTTCCTCTGTGGAAATAAACAGCG
AAAGGCAAGGCCTCGACTCCTACCACCACCAGCACCACCAGCACCACCAG
CAGCATCACCAGCAACCATATTATCAGCGCGATGCAAGCACCTCCATTGC
CAATAGCATTGAGAAGACAATCTTGCCTTCCTTCTCATCTCATCCTCATC
CCCTTAAGCCTCACTGCCAACACCACCAGCACCATCTGCACGAGCGATCC
TGCACCTTGAAAGCTGATGTGAACCCCGCCCCTATCACCTCCCCGTGTTG
CCTCTATCGCCACGGCAATACCACAGATAGCTTACACCCGCACATTAACA
GCTCTTGCAACATCAATGCGGCAGGCTGTATCACCAATCGAGCCTCCGTG
TTGTACGACGATAAGGGGGAGGAAGAGGTTGCCATCGGCAGCTGCAGTAG
CACCTGCAGCACCTGCAGCGGTAGCAGCAGCATCAACGGTAGTGAGGAGG
AGCTGCGCTTGCTTACGACGGAAAATTATGAAACTCATTTTGCGTCGAGC
GCGGGAGCGGAAGCCTACATAGGCTCGAGTGGTGGGATTTCTTCTCCCTC
TTTGACCACTTCTGAAGAGGATGATGAGGAGTTGCCGCATCATCATTCTC
TGCCCGCCACCTCGAGGATCAGGCGCAATGCTGCCATTGTAGCAGCTGCT
GCTCTTGCCGCAGACTCGGGCAGCAGGAGCCGGAGGAGGTCGGTCCATGT
AGAGGGGTATAGCAGCACCAGGAGTAGCATCACCGGCGACAGCAGCAGCT
CTTCCACTGCCACCTTCATTCTCCCTTTCCATCCCACCACCACCGCAAGC
AGCGGAGGGATAGGGGGAGGGTACTGGCCCCCCCTCAAGACGGTCAATCG
TCATAGTCGTCGGAAATATTCGATGGACCCAGCCAGTTTTGTCATCGTTC
CCACCCCCAAGATACTACTCGGGAGCTGGTTTGATAAGCGGCCAAACCGT
CTGTGTCGGACACCTGGGTGTAGGAATCGGTATAGAACTCCTGGATACTT
GTGTGAGTCTTGTGGGGGAGGAAAGTGTCAAGTAAAGGGGTGTAGACGCT
TGCATCAGGGGAAGCAGGGGTTGTCGGATCTGTTCTTTTGTCGGGCACAT
CGGAACGTGTACGCGGCGTTGATGATGAAGGATGGGGGGGATGCGCGGTG
GAGGAACAGGAACGAGAGAAAGAGCAGGAGCAGGAGCAGGAGCTGGAGCT
GGAGCTGGGGCGAGAAATGACGGCATGAGTGGAGGAAGTGCATGCCGCTG
CCTTTTTAAAAGGTGTACGTGTTCTGTGCACATTCGAGCCCAAGCAACCA
AAGTCTCCCCCTCCACACCACCTCCTTCCCTCCTGCCCTAATACCTTGGG
TGGACGCTTGGGGAGGTTTCCTTCTATGTATGTATATATGTGCTCGTGGC
GTTGTGTGTGTCCATGAATGAGCAAGATAGGATTAAATCAAGCCGGGATG
CTTGAAGAAATCCTCGTCTCACTCCACCTACCGGATTAAATGACTGAGTT
GATCACGGGTAAATAACAAACGAATATCCTCACGAATTAAAAGACAGCAT
GTGCCCTCTAATGTCTCACTCCGTTTCCACCAGTTAGAGACGGCATATAT
ATGAATTAGGTTAATCGCCACTTAAGGCGATGCTTACCCGCCATAAAGGT
TCAGTAACCGCAACTGCGACAATAGTTTTCTACCAGATTGCATGAGTAGT
AGAGAAGAAAAAACCGAATTCGAGCTAGCAGAATGATCACAATAAAGCAT
CTTGCGGTAGCGATGCAATAGAATATAAGGAAAACAAATCCTGATCTTGA
GTGCCTGTGTATGGTGCGGAGAAGAAGGAGGTCCTTCTATACCTTATTGT
GCGTACAGAATATCCCATCTGCAGGAAGATGGCGCGCATAAGGGGGGAAG
GGGAGGGAAAGAAGGCAGAGAGAAAGAGAGAAGGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAATTGTAGAATGCCTTATGTTTTTGA
ATGAGCCCTAAAACCGTCAAGCAAATCCTTATACTTTTGAAAAATAATAT
GTGTACCCAAAATCTTGCCCTCAGGAAAAAGACAAGAAGATGAGAAAGAG
AAAGCGAGAAAGAGAAAGGGGTCGTCAAAGAGGAATAAAGCGAGACATGA
AGATACAGAAATCTAGAAAGAAGCATACTCTTTCCTCTATTTTTTGTAAG
GAAATATGATGCGATATGCCTGTCCGGTCCCCATCGACCCGCCAAGAGAT
GCGAATGAAAGAAATGAGATTGTAATGATGGGCATCCGAACCACCTTATC
AATCATTTTCTCATTGAATATAAAAACAGAATGCGACATACGTGAGAT back to topCoding sequence (CDS) from alignment at chr13:402930..406327+ >NO13G01330.1 ID=NO13G01330.1|Name=NO13G01330.1|organism=Nannochloropsis oceanica|type=CDS|length=2019bp|location=Sequence derived from alignment at chr13:402930..406327+ (Nannochloropsis oceanica) ATGGTACCTTCTCGACTTCTGTCGACCCCTTCTTGTGCCGACAACCACTC CTCCCCCGCTGCTGGTGCCACCTCTTCCCTTTACGAGAATGACAATGCCT TTTTGGAAGCCTCTCTCGATGCCACTGACATCCCGGCCAGTCCGGACCCT GTAAAGGCTGCGGGACACTGCCAGTCCCCTCACCAAGCAGAACAGCAGCC CCCAGTCAGTTATGGGCCACCCCAGCAGCACCAGCACCAGCAGCAGCAAG ATGTATCAGAACAAGCCAAAGGGGTGGCGATGCCTGACGATTCATGCGAC TTCTTGCTGCATATTTCAGACTCCCCTTTCTCCCGCCTTCGGGTCCGAGG AGGGGTCGCCTGTACCAGAGGCAGAGGGGATGATGCAGGTGGTATCGGGG CCGACGAATTTGCCAGCACGTGCATGAGTCCAACCGCGGTTATTGGAGAT CCTATCGAATCGACGATGATGGAGCTCAACTTCCTGGCGGACGCCGTGGG CCATCTGGAGGGCGTGGATGTGAACATGCTTGCTACACACGCAACTTGCG GCTCAGGGCACAGTCTGTATGCCTTTCCCCTGGATAGAGCAGAAGGCGAA CGACAACCCTCCCCATATTCGTATCACCCCGAGCACCAGCACAAGTACAA GCAGACCCAGCATCGTGCCGATAGCTATTCATTTTCCCCGCGACCCCACC ATGGTCAACAAGAGCGGCAGCAGCAAAAGCATTATTTGTCTGACGCTTCC CATTACATGGCACATACGAACCAAGTTTCCTCTGTGGAAATAAACAGCGA AAGGCAAGGCCTCGACTCCTACCACCACCAGCACCACCAGCACCACCAGC AGCATCACCAGCAACCATATTATCAGCGCGATGCAAGCACCTCCATTGCC AATAGCATTGAGAAGACAATCTTGCCTTCCTTCTCATCTCATCCTCATCC CCTTAAGCCTCACTGCCAACACCACCAGCACCATCTGCACGAGCGATCCT GCACCTTGAAAGCTGATGTGAACCCCGCCCCTATCACCTCCCCGTGTTGC CTCTATCGCCACGGCAATACCACAGATAGCTTACACCCGCACATTAACAG CTCTTGCAACATCAATGCGGCAGGCTGTATCACCAATCGAGCCTCCGTGT TGTACGACGATAAGGGGGAGGAAGAGGTTGCCATCGGCAGCTGCAGTAGC ACCTGCAGCACCTGCAGCGGTAGCAGCAGCATCAACGGTAGTGAGGAGGA GCTGCGCTTGCTTACGACGGAAAATTATGAAACTCATTTTGCGTCGAGCG CGGGAGCGGAAGCCTACATAGGCTCGAGTGGTGGGATTTCTTCTCCCTCT TTGACCACTTCTGAAGAGGATGATGAGGAGTTGCCGCATCATCATTCTCT GCCCGCCACCTCGAGGATCAGGCGCAATGCTGCCATTGTAGCAGCTGCTG CTCTTGCCGCAGACTCGGGCAGCAGGAGCCGGAGGAGGTCGGTCCATGTA GAGGGGTATAGCAGCACCAGGAGTAGCATCACCGGCGACAGCAGCAGCTC TTCCACTGCCACCTTCATTCTCCCTTTCCATCCCACCACCACCGCAAGCA GCGGAGGGATAGGGGGAGGGTACTGGCCCCCCCTCAAGACGGTCAATCGT CATAGTCGTCGGAAATATTCGATGGACCCAGCCAGTTTTGTCATCGTTCC CACCCCCAAGATACTACTCGGGAGCTGGTTTGATAAGCGGCCAAACCGTC TGTGTCGGACACCTGGGTGTAGGAATCGGTATAGAACTCCTGGATACTTG TGTGAGTCTTGTGGGGGAGGAAAGTGTCAAGTAAAGGGGTGTAGACGCTT GCATCAGGGGAAGCAGGGGTTGTCGGATCTGTTCTTTTGTCGGGCACATC GGAACGTGTACGCGGCGTTGATGATGAAGGATGGGGGGGATGCGCGGTGG AGGAACAGGAACGAGAGAAAGAGCAGGAGCAGGAGCAGGAGCTGGAGCTG GAGCTGGGGCGAGAAATGA back to top
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