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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr13 | genome | chr13:226303..228097 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO13G00670.2 vs.
Match: EWM21739.1 (thioredoxin [Nannochloropsis gaditana]; EWM21740.1 thioredoxin [Nannochloropsis gaditana]) HSP 1 Score: 352.1 bits (902), Expect = 2.700e-93 Identity = 200/302 (66.23%), Postives = 229/302 (75.83%), Query Frame = 0
Query: 1 MYRRLLSDNTRRRITDVSLRYRSAPPPLPLVCCRGAASSKPPPSGRLPSTG---NGLIGMPPPPRSPPSTVKSKPKISPPAAAARAPSIIEVDVKNFVALLNSPVPVILDCYATWCDPCKKLTPVLEKIVGKYPGRVILGKLDVDKHPELAAQLKVSSLPAVFGLCEGKLVDRFVGMPTEPILAGFLDKMLSIIPPAGTDEGVDGAPSVAERQEADLAMADSLM-KGGNNGGKEEKDKATKAGALYKQVYEELAAEETPAPYLQARCLAGLARCALMGGAAEEARQIVQLLRTKHKAEMESI 299
M RL + + RR VS R R + + RG ASSK PPS P G NGLIG+PP PR PPS S+P +P A AR PS+IEVDVKNFVALL SPVPVILDCYA+WCDPCKKLTPVLE+IVGKYPGR+IL KLDVD H ELAAQL VSSLPAVFGLCEGKLVDRFVGMPTEP+LAGFLDKMLSIIP + EG G PS AE+QEA L AD+L+ +G GG E AT+AGALY+QVYEEL E+TPA YLQARCLAGLARCAL GGA EEA+++V +L+ +HKA+ME++
Sbjct: 40 MNSRLFAVSACRRA--VSARQRQPTSTVSRIALRGLASSKHPPSSPPPPQGMGANGLIGLPPNPRPPPSRKPSQP--TPTPATARMPSVIEVDVKNFVALLKSPVPVILDCYASWCDPCKKLTPVLERIVGKYPGRLILAKLDVDNHQELAAQLNVSSLPAVFGLCEGKLVDRFVGMPTEPVLAGFLDKMLSIIPTSSGQEG-KGEPSPAEKQEAVLKRADALLTEGTKEGGSGE--TATEAGALYRQVYEELGKEDTPATYLQARCLAGLARCALRGGAREEAKELVGMLKRQHKADMETM 334
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO13G00670.2 ID=NO13G00670.2|Name=NO13G00670.2|organism=Nannochloropsis oceanica|type=mRNA|length=1695bp AAACGCTCTTCTTACCGTCAGACAGGCCGCCATGTACCGTCGCTTGTTGT CTGACAACACGCGCAGGAGGATTACCGATGTCTCCCTACGCTATCGATCC GCCCCACCTCCTTTGCCCCTCGTATGCTGCCGGGGCGCAGCCTCCTCCAA ACCACCCCCCTCCGGCCGTCTACCCAGCACAGGCAACGGGCTGATAGGCA TGCCCCCTCCTCCCCGTTCCCCACCCTCTACAGTAAAGTCCAAGCCCAAG ATATCCCCTCCAGCGGCGGCCGCACGCGCGCCATCAATCATCGAGGTGGA CGTCAAAAATTTTGTGGCCTTACTCAACTCCCCCGTGCCCGTCATCCTGG ACTGTTACGCCACTTGGTGCGACCCTTGCAAGAAGCTCACTCCGGTGCTG GAGAAAATCGTGGGGAAGTATCCAGGTAGGGTTATTCTCGGAAAACTCGA CGTGGACAAGCACCCAGAGCTGGCAGCGCAACTGAAAGTCAGCTCTCTCC CGGCCGTCTTCGGTCTCTGCGAGGGCAAGCTAGTCGATCGATTCGTAGGC ATGCCCACCGAGCCCATTCTGGCGGGATTCCTGGACAAGATGCTCTCCAT CATTCCACCTGCAGGCACCGATGAGGGAGTGGATGGAGCGCCTTCCGTGG CGGAGAGACAGGAGGCTGATCTGGCCATGGCCGATAGTTTGATGAAAGGA GGAAACAATGGGGGGAAAGAGGAGAAGGACAAGGCCACCAAAGCGGGTGC GTTGTATAAACAAGTGTATGAGGAACTGGCAGCAGAGGAAACACCAGCGC CTTATTTGCAGGCGCGATGCTTGGCGGGTTTGGCGCGGTGTGCATTGATG GGAGGAGCAGCGGAGGAGGCGAGGCAAATTGTGCAACTACTGAGGACGAA GCACAAGGCGGAGATGGAGAGTATACTGGAGGTTGCCAGTGCCGTCTCTT TCGCGGAAGTGGTTATGCAGGCGCCGCCAGAGGAAGGAGGGCTCTCAGTA GAGGACACATTAAAGAAGCTGCAGGGGGATGTACTTAAGGCACCGACTGA TCTGGAGGCCCGGTATCAGCTGGCGTTGAAGTGCTTCCAGCTGCAACGGT TCGAGGCAGCGATGAATGAGTGCTTGGAGGTGGGAAGTAAAAGGGAGGGA TGGAGGGAGGGGGAGAGAGATGAGGATAAAAGGAGGATTTTAATAGATTA TTTTCATTTAGAAACATATTTGACTGAAAATTGGACAATTTGTCATCTTG AAATATTCTCATTCTTGTCACCCTCTCCCCCTCCACCTACACAGATCATC AAGCGCGAGAAGGAGTGGAAGGAAGGGGCTGCCAAAGCCTTGCTACTCAA GATTTTTGAGGCCTTGGGCCCACAAAACGAAGTGACCAAGAAAGGACGGC AACGCATGACGAATTACCTTTTTTTGTAGATCCGGTTATAGGTGAAGAGG ATGCTTGTCCTTCCAACCCCCTCCTCCTGTCTCCTCCTTCTTTTACTCCC AGGCCTTCGCCTTTCTGCGCCGGAAGAATTTCATCAAAGAAGTATTTGCT CTTTCAAGATAACCAAGTGCGAGACATGCCTAGTACCAACAAAAATAGAA ATGAAGACGATGAGGAGAACGAGCAAGAGAGGAGAAATACAAAGAGGCCG TGGGACAAAAAGTAACAACCACATGTACAATGGAAAGAACAATGT back to topprotein sequence of NO13G00670.2 >NO13G00670.2-protein ID=NO13G00670.2-protein|Name=NO13G00670.2|organism=Nannochloropsis oceanica|type=polypeptide|length=466bp MYRRLLSDNTRRRITDVSLRYRSAPPPLPLVCCRGAASSKPPPSGRLPST GNGLIGMPPPPRSPPSTVKSKPKISPPAAAARAPSIIEVDVKNFVALLNS PVPVILDCYATWCDPCKKLTPVLEKIVGKYPGRVILGKLDVDKHPELAAQ LKVSSLPAVFGLCEGKLVDRFVGMPTEPILAGFLDKMLSIIPPAGTDEGV DGAPSVAERQEADLAMADSLMKGGNNGGKEEKDKATKAGALYKQVYEELA AEETPAPYLQARCLAGLARCALMGGAAEEARQIVQLLRTKHKAEMESILE VASAVSFAEVVMQAPPEEGGLSVEDTLKKLQGDVLKAPTDLEARYQLALK CFQLQRFEAAMNECLEVGSKREGWREGERDEDKRRILIDYFHLETYLTEN WTICHLEIFSFLSPSPPPPTQIIKREKEWKEGAAKALLLKIFEALGPQNE VTKKGRQRMTNYLFL* back to topmRNA from alignment at chr13:226303..228097- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO13G00670.2 ID=NO13G00670.2|Name=NO13G00670.2|organism=Nannochloropsis oceanica|type=mRNA|length=1795bp|location=Sequence derived from alignment at chr13:226303..228097- (Nannochloropsis oceanica) AAACGCTCTTCTTACCGTCAGACAGGCCGCCATGTACCGTCGCTTGTTGT
CTGACAACACGCGCAGGAGGATTACCGATGTCTCCCTACGCTATCGATCC
GCCCCACCTCCTTTGCCCCTCGTATGCTGCCGGGGCGCAGCCTCCTCCAA
ACCACCCCCCTCCGGCCGTCTACCCAGCACAGGCAACGGGCTGATAGGCA
TGCCCCCTCCTCCCCGTTCCCCACCCTCTACAGTAAAGTCCAAGCCCAAG
ATATCCCCTCCAGCGGCGGCCGCACGCGCGCCATCAATCATCGAGGTGGA
CGTCAAAAATTTTGTGGCCTTACTCAACTCCCCCGTGCCCGTCATCCTGG
ACTGTTACGCCACTTGGTGCGACCCTTGCAAGAAGCTCACTCCGGTGCTG
GAGAAAATCGTGGGGAAGTATCCAGGTAGGGTTATTCTCGGAAAACTCGA
CGTGGACAAGCACCCAGAGCTGGCAGCGCAACTGAAAGTCAGCTCTCTCC
CGGCCGTCTTCGGTCTCTGCGAGGGCAAGCTAGTCGATCGATTCGTAGGC
ATGCCCACCGAGCCCATTCTGGCGGGATTCCTGGACAAGATGCTCTCCAT
CATTCCACCTGCAGGCACCGATGAGGGAGTGGATGGAGCGCCTTCCGTGG
CGGAGAGACAGGAGGCTGATCTGGCCATGGCCGATAGTTTGATGAAAGGA
GGAAACAATGGGGGGAAAGAGGAGAAGGACAAGGCCACCAAAGCGGGTGC
GTTGTATAAACAAGTGTATGAGGAACTGGCAGCAGAGGAAACACCAGCGC
CTTATTTGCAGGCGCGATGCTTGGCGGGTTTGGCGCGGTGTGCATTGATG
GGAGGAGCAGCGGAGGAGGCGAGGCAAATTGTGCAACTACTGAGGACGAA
GCACAAGGCGGAGATGGAGAGTATACTGGTAAGAGAAAGGAAGGGAAGGA
CAGGGGAAAGAAGAAGTCCTGTTGAGATGCTGATGCACGACTTCTCGTCT
ATATTCCGCCCTGCATTTCCCGTAACAGGAGGTTGCCAGTGCCGTCTCTT
TCGCGGAAGTGGTTATGCAGGCGCCGCCAGAGGAAGGAGGGCTCTCAGTA
GAGGACACATTAAAGAAGCTGCAGGGGGATGTACTTAAGGCACCGACTGA
TCTGGAGGCCCGGTATCAGCTGGCGTTGAAGTGCTTCCAGCTGCAACGGT
TCGAGGCAGCGATGAATGAGTGCTTGGAGGTGGGAAGTAAAAGGGAGGGA
TGGAGGGAGGGGGAGAGAGATGAGGATAAAAGGAGGATTTTAATAGATTA
TTTTCATTTAGAAACATATTTGACTGAAAATTGGACAATTTGTCATCTTG
AAATATTCTCATTCTTGTCACCCTCTCCCCCTCCACCTACACAGATCATC
AAGCGCGAGAAGGAGTGGAAGGAAGGGGCTGCCAAAGCCTTGCTACTCAA
GATTTTTGAGGCCTTGGGCCCACAAAACGAAGTGACCAAGAAAGGACGGC
AACGCATGACGAATTACCTTTTTTTGTAGATCCGGTTATAGGTGAAGAGG
ATGCTTGTCCTTCCAACCCCCTCCTCCTGTCTCCTCCTTCTTTTACTCCC
AGGCCTTCGCCTTTCTGCGCCGGAAGAATTTCATCAAAGAAGTATTTGCT
CTTTCAAGATAACCAAGTGCGAGACATGCCTAGTACCAACAAAAATAGAA
ATGAAGACGATGAGGAGAACGAGCAAGAGAGGAGAAATACAAAGAGGCCG
TGGGACAAAAAGTAACAACCACATGTACAATGGAAAGAACAATGT back to topCoding sequence (CDS) from alignment at chr13:226303..228097- >NO13G00670.2 ID=NO13G00670.2|Name=NO13G00670.2|organism=Nannochloropsis oceanica|type=CDS|length=1398bp|location=Sequence derived from alignment at chr13:226303..228097- (Nannochloropsis oceanica) ATGTACCGTCGCTTGTTGTCTGACAACACGCGCAGGAGGATTACCGATGT CTCCCTACGCTATCGATCCGCCCCACCTCCTTTGCCCCTCGTATGCTGCC GGGGCGCAGCCTCCTCCAAACCACCCCCCTCCGGCCGTCTACCCAGCACA GGCAACGGGCTGATAGGCATGCCCCCTCCTCCCCGTTCCCCACCCTCTAC AGTAAAGTCCAAGCCCAAGATATCCCCTCCAGCGGCGGCCGCACGCGCGC CATCAATCATCGAGGTGGACGTCAAAAATTTTGTGGCCTTACTCAACTCC CCCGTGCCCGTCATCCTGGACTGTTACGCCACTTGGTGCGACCCTTGCAA GAAGCTCACTCCGGTGCTGGAGAAAATCGTGGGGAAGTATCCAGGTAGGG TTATTCTCGGAAAACTCGACGTGGACAAGCACCCAGAGCTGGCAGCGCAA CTGAAAGTCAGCTCTCTCCCGGCCGTCTTCGGTCTCTGCGAGGGCAAGCT AGTCGATCGATTCGTAGGCATGCCCACCGAGCCCATTCTGGCGGGATTCC TGGACAAGATGCTCTCCATCATTCCACCTGCAGGCACCGATGAGGGAGTG GATGGAGCGCCTTCCGTGGCGGAGAGACAGGAGGCTGATCTGGCCATGGC CGATAGTTTGATGAAAGGAGGAAACAATGGGGGGAAAGAGGAGAAGGACA AGGCCACCAAAGCGGGTGCGTTGTATAAACAAGTGTATGAGGAACTGGCA GCAGAGGAAACACCAGCGCCTTATTTGCAGGCGCGATGCTTGGCGGGTTT GGCGCGGTGTGCATTGATGGGAGGAGCAGCGGAGGAGGCGAGGCAAATTG TGCAACTACTGAGGACGAAGCACAAGGCGGAGATGGAGAGTATACTGGAG GTTGCCAGTGCCGTCTCTTTCGCGGAAGTGGTTATGCAGGCGCCGCCAGA GGAAGGAGGGCTCTCAGTAGAGGACACATTAAAGAAGCTGCAGGGGGATG TACTTAAGGCACCGACTGATCTGGAGGCCCGGTATCAGCTGGCGTTGAAG TGCTTCCAGCTGCAACGGTTCGAGGCAGCGATGAATGAGTGCTTGGAGGT GGGAAGTAAAAGGGAGGGATGGAGGGAGGGGGAGAGAGATGAGGATAAAA GGAGGATTTTAATAGATTATTTTCATTTAGAAACATATTTGACTGAAAAT TGGACAATTTGTCATCTTGAAATATTCTCATTCTTGTCACCCTCTCCCCC TCCACCTACACAGATCATCAAGCGCGAGAAGGAGTGGAAGGAAGGGGCTG CCAAAGCCTTGCTACTCAAGATTTTTGAGGCCTTGGGCCCACAAAACGAA GTGACCAAGAAAGGACGGCAACGCATGACGAATTACCTTTTTTTGTAG back to top
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