NO12G03770.1, NO12G03770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03770.1
Unique NameNO12G03770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1505
Alignment locationchr12:1053765..1055376 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:1053765..1055376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO12G03770.1 vs.
Match: EWM25663.1 (Nicotinamide N-methyltransferase, putative [Nannochloropsis gaditana])

HSP 1 Score: 119.0 bits (297), Expect = 3.200e-23
Identity = 75/191 (39.27%), Postives = 96/191 (50.26%), Query Frame = 0 
Query:  174 ANSPPSTTTPAHSEFVPSDADRSLYVCLTDGHPDCLSSLRKCVALNKTRLPSGAKVEVQRLVWKEEGEQEIKDCDMTQKCHRQLHDNHTDEKSHHQGCCEPFDLIVAADVLFFERFHRALLHTLHTHLHPEGGEAWFLQPSRGGSLERFIALVKEEGGWEVVWEGERGGMQTGGDDCDYVESAPLQLLKLR 365
            ++S  S++ P+     P        VCLTDGH  C+SSLR+C+  N+        V+  +L+W +           T      L + H             FDLIV ADVLFFERFH ALL TL  +L+P GGE W LQPSRGGSLERF++  +E+GGWE       G   +   D        L LLKLR
Sbjct:   47 SSSSSSSSLPSLPPCPPPSFPPPYTVCLTDGHSACVSSLRRCLERNQASFSPHISVQAHQLLWTD-----------TIGSPPNLLEGHKPAS---------FDLIVGADVLFFERFHDALLKTLSVYLNPAGGEVWLLQPSRGGSLERFVSRSQEQGGWEASHTNVVGHRHSPDTDA-------LVLLKLR 210
The following BLAST results are available for this feature:
BLAST of NO12G03770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25663.13.200e-2339.27Nicotinamide N-methyltransferase, putative [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03770NO12G03770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03770.1NO12G03770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03770.1.cds1NO12G03770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO12G03770.1.cds2NO12G03770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03770.1 ID=NO12G03770.1|Name=NO12G03770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1505bp
ACAGGCGCAGCCCCGCCCGACTCCATTATGACGGTCCTGTCACCCCGGCC
TAGCAAGGCGCAGGCTCGGTGGAATCTCCTTCGGCAAGCCATCCTATCAT
CAGCAGGCTCCTCCTCCCCTGCCTCCTCCTCTTTGCCGCCGCATACCGGT
GGCATCAGGACGTACACGTTTCATCTTCCATGTCCTTCCACGTCATCGCC
ATTGCCTCTAACCATTGCTCTTCAACTCATCACGCCAAGCCCTCCTTCGA
CCCTCTCCTCGGCCTGCCCCTTGTCCTCCCCATTAGCCGCCCTTGTCTCC
CACCGCCCTGAGAATGTCGGCGTCGACAACACCGGCAATGTGCGAGTGTG
GCCGGCGGAAGAGGCGCTACTCTTACTGCTGCTGAAGAAAGGCCTGGACA
GACAGACTGGCATCAGGAGGCGGCCAAGGCGCATTCTTGAACTGGGCGCG
GGCTGCACGGGTTTGCTCGGTTTGGGGCTAGCCATGGCTTGGGGTGGTAA
TAGCTTGAATGGCGGTCCCTCCACCCCTTGTACGGTAATCACACAAGCTA
ACTCTCCACCATCAACGACAACACCCGCTCATTCAGAATTCGTGCCATCA
GACGCCGACCGATCGCTGTATGTGTGCCTTACTGACGGGCATCCAGACTG
TCTCTCTTCCCTCCGTAAATGCGTCGCACTGAACAAAACCCGACTCCCAT
CAGGGGCGAAGGTCGAGGTGCAGAGGTTGGTATGGAAGGAGGAAGGGGAG
CAGGAAATAAAAGATTGCGATATGACGCAGAAATGTCACAGGCAACTCCA
TGACAATCATACGGACGAAAAGAGCCATCACCAAGGCTGCTGTGAGCCCT
TTGATCTCATCGTGGCGGCAGATGTCCTCTTCTTCGAGCGCTTCCATCGC
GCCCTCCTTCACACCCTCCACACACACTTGCATCCCGAGGGAGGCGAGGC
TTGGTTCTTGCAGCCGTCGCGGGGGGGGTCTTTGGAAAGATTCATTGCAC
TAGTGAAGGAGGAAGGGGGATGGGAAGTGGTGTGGGAGGGAGAGAGGGGT
GGGATGCAGACGGGAGGTGATGACTGTGATTATGTGGAGAGTGCCCCGTT
GCAGCTGCTCAAATTGCGGTGTACGCGGCAATCTGACGGCGGAATCGATC
AGAGTATAACTTATGTTGCTAGCTAATGGAGTGTGTAGTTGTCCCAAGTA
CCCACATGCAACGTTGCTTCCATCTCGCCTTCCTACGAATGCATGTTCAT
TCACGATATAGCACATTACGTCACCACGTTGTGGCCGGTAGAGCGCAGGA
AACAGATGATGAAGATTAACAATCAATGACAGGGCGCCCTGTACGTATGG
ACATGCCAGAAGCTTCATGGTGAAGAGGCTAGTCTCAAAAAGACTTTGCC
CATTGCATTTCTCATAAGTAAACCTGCCCTTGAACTTTGCGCCGTTAACA
ACAAAATTTAATAGGGAGGTCCGTCATGGTGATTACAACTAATGTGGGTT
GAGTG
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protein sequence of NO12G03770.1

>NO12G03770.1-protein ID=NO12G03770.1-protein|Name=NO12G03770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MTVLSPRPSKAQARWNLLRQAILSSAGSSSPASSSLPPHTGGIRTYTFHL
PCPSTSSPLPLTIALQLITPSPPSTLSSACPLSSPLAALVSHRPENVGVD
NTGNVRVWPAEEALLLLLLKKGLDRQTGIRRRPRRILELGAGCTGLLGLG
LAMAWGGNSLNGGPSTPCTVITQANSPPSTTTPAHSEFVPSDADRSLYVC
LTDGHPDCLSSLRKCVALNKTRLPSGAKVEVQRLVWKEEGEQEIKDCDMT
QKCHRQLHDNHTDEKSHHQGCCEPFDLIVAADVLFFERFHRALLHTLHTH
LHPEGGEAWFLQPSRGGSLERFIALVKEEGGWEVVWEGERGGMQTGGDDC
DYVESAPLQLLKLRCTRQSDGGIDQSITYVAS*
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mRNA from alignment at chr12:1053765..1055376+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03770.1 ID=NO12G03770.1|Name=NO12G03770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1612bp|location=Sequence derived from alignment at chr12:1053765..1055376+ (Nannochloropsis oceanica)
ACAGGCGCAGCCCCGCCCGACTCCATTATGACGGTCCTGTCACCCCGGCC
TAGCAAGGCGCAGGCTCGGTGGAATCTCCTTCGGCAAGCCATCCTATCAT
CAGCAGGCTCCTCCTCCCCTGCCTCCTCCTCTTTGCCGCCGCATACCGGT
GGCATCAGGACGTACACGTTTCATCTTCCATGTCCTTCCACGTCATCGCC
ATTGCCTCTAACCATTGCTCTTCAACTCATCACGCCAAGCCCTCCTTCGA
CCCTCTCCTCGGCCTGCCCCTTGTCCTCCCCATTAGCCGCCCTTGTCTCC
CACCGCCCTGAGAATGTCGGCGTCGACAACACCGGCAATGTGCGAGTGTG
GCCGGCGGAAGAGGCGCTACTCTTACTGCTGCTGAAGAAAGGTATGGAAC
TGAATGGCTATTGTATGGCGCGGCTTACTTGTATACCCAGGGCAAAGCAA
CGAACAAGGCCTCAAGAATCTCATCTCCTACCCTCCCCTTCTCCCAAGGC
CTGGACAGACAGACTGGCATCAGGAGGCGGCCAAGGCGCATTCTTGAACT
GGGCGCGGGCTGCACGGGTTTGCTCGGTTTGGGGCTAGCCATGGCTTGGG
GTGGTAATAGCTTGAATGGCGGTCCCTCCACCCCTTGTACGGTAATCACA
CAAGCTAACTCTCCACCATCAACGACAACACCCGCTCATTCAGAATTCGT
GCCATCAGACGCCGACCGATCGCTGTATGTGTGCCTTACTGACGGGCATC
CAGACTGTCTCTCTTCCCTCCGTAAATGCGTCGCACTGAACAAAACCCGA
CTCCCATCAGGGGCGAAGGTCGAGGTGCAGAGGTTGGTATGGAAGGAGGA
AGGGGAGCAGGAAATAAAAGATTGCGATATGACGCAGAAATGTCACAGGC
AACTCCATGACAATCATACGGACGAAAAGAGCCATCACCAAGGCTGCTGT
GAGCCCTTTGATCTCATCGTGGCGGCAGATGTCCTCTTCTTCGAGCGCTT
CCATCGCGCCCTCCTTCACACCCTCCACACACACTTGCATCCCGAGGGAG
GCGAGGCTTGGTTCTTGCAGCCGTCGCGGGGGGGGTCTTTGGAAAGATTC
ATTGCACTAGTGAAGGAGGAAGGGGGATGGGAAGTGGTGTGGGAGGGAGA
GAGGGGTGGGATGCAGACGGGAGGTGATGACTGTGATTATGTGGAGAGTG
CCCCGTTGCAGCTGCTCAAATTGCGGTGTACGCGGCAATCTGACGGCGGA
ATCGATCAGAGTATAACTTATGTTGCTAGCTAATGGAGTGTGTAGTTGTC
CCAAGTACCCACATGCAACGTTGCTTCCATCTCGCCTTCCTACGAATGCA
TGTTCATTCACGATATAGCACATTACGTCACCACGTTGTGGCCGGTAGAG
CGCAGGAAACAGATGATGAAGATTAACAATCAATGACAGGGCGCCCTGTA
CGTATGGACATGCCAGAAGCTTCATGGTGAAGAGGCTAGTCTCAAAAAGA
CTTTGCCCATTGCATTTCTCATAAGTAAACCTGCCCTTGAACTTTGCGCC
GTTAACAACAAAATTTAATAGGGAGGTCCGTCATGGTGATTACAACTAAT
GTGGGTTGAGTG
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Coding sequence (CDS) from alignment at chr12:1053765..1055376+

>NO12G03770.1 ID=NO12G03770.1|Name=NO12G03770.1|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at chr12:1053765..1055376+ (Nannochloropsis oceanica)
ATGACGGTCCTGTCACCCCGGCCTAGCAAGGCGCAGGCTCGGTGGAATCT
CCTTCGGCAAGCCATCCTATCATCAGCAGGCTCCTCCTCCCCTGCCTCCT
CCTCTTTGCCGCCGCATACCGGTGGCATCAGGACGTACACGTTTCATCTT
CCATGTCCTTCCACGTCATCGCCATTGCCTCTAACCATTGCTCTTCAACT
CATCACGCCAAGCCCTCCTTCGACCCTCTCCTCGGCCTGCCCCTTGTCCT
CCCCATTAGCCGCCCTTGTCTCCCACCGCCCTGAGAATGTCGGCGTCGAC
AACACCGGCAATGTGCGAGTGTGGCCGGCGGAAGAGGCGCTACTCTTACT
GCTGCTGAAGAAAGGCCTGGACAGACAGACTGGCATCAGGAGGCGGCCAA
GGCGCATTCTTGAACTGGGCGCGGGCTGCACGGGTTTGCTCGGTTTGGGG
CTAGCCATGGCTTGGGGTGGTAATAGCTTGAATGGCGGTCCCTCCACCCC
TTGTACGGTAATCACACAAGCTAACTCTCCACCATCAACGACAACACCCG
CTCATTCAGAATTCGTGCCATCAGACGCCGACCGATCGCTGTATGTGTGC
CTTACTGACGGGCATCCAGACTGTCTCTCTTCCCTCCGTAAATGCGTCGC
ACTGAACAAAACCCGACTCCCATCAGGGGCGAAGGTCGAGGTGCAGAGGT
TGGTATGGAAGGAGGAAGGGGAGCAGGAAATAAAAGATTGCGATATGACG
CAGAAATGTCACAGGCAACTCCATGACAATCATACGGACGAAAAGAGCCA
TCACCAAGGCTGCTGTGAGCCCTTTGATCTCATCGTGGCGGCAGATGTCC
TCTTCTTCGAGCGCTTCCATCGCGCCCTCCTTCACACCCTCCACACACAC
TTGCATCCCGAGGGAGGCGAGGCTTGGTTCTTGCAGCCGTCGCGGGGGGG
GTCTTTGGAAAGATTCATTGCACTAGTGAAGGAGGAAGGGGGATGGGAAG
TGGTGTGGGAGGGAGAGAGGGGTGGGATGCAGACGGGAGGTGATGACTGT
GATTATGTGGAGAGTGCCCCGTTGCAGCTGCTCAAATTGCGGTGTACGCG
GCAATCTGACGGCGGAATCGATCAGAGTATAACTTATGTTGCTAGCTAA
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Synonyms
Publications