NO12G03430.1, NO12G03430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO12G03430.1
Unique NameNO12G03430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1947
Alignment locationchr12:940385..942331 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr12genomechr12:940385..942331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO12G03430.1 vs.
Match: EWM25704.1 (cystathionine gamma-synthase [Nannochloropsis gaditana])

HSP 1 Score: 814.7 bits (2103), Expect = 2.000e-232
Identity = 419/612 (68.46%), Postives = 485/612 (79.25%), Query Frame = 0 
Query:   21 LPSSSTLARALTSVTATASTQSFHKICTRPLPTPRQRYRHTDATAVQLRKTLGAPIPLNDHAVSVTMPKWQHVVGYEEGDADVTDKLVLGYPRFVYHPFVKQLVDVWKAHAVEVGAIAAHEVVGALPFPSLGTAERCRRFLEDAHAHEPGFPVNLHPVGVMDTYIVTFPSFAAGEAKAYWQHSGEILSSRKAARVLASLGHPVSTLVNGFPSAAPLSSSTSSSTVAATAVGEARPGCYRQALKERISALTGQREEDVYLTISGMAAIFKAFHICKQARPNRRVVVFGFTYLDTLKICLRKEWNSHGVHFLGRGDVADLKTLEGILKEEEIMAVFTEFPSNPLLQCPDLGKLTELGREYGFPVVVDDTISNFDNVDLMGAERGREGGGYGGIDMSVSSLTKLFSGKGDVMAGSLVLNGKSPSYKELRRAMEEGKEGGREGGLGDDAELYEEDAKVVWENGRDFEERSRRINETTRGLVEWLVGEEGVEEVSYPSRTQKEIYDRFRRREGGYGGLFSVSLKEGLSPTAFYDALDVYKGPSLGTNFTLACPYTLLAHYNELDFARSHGVCPNLVRVSVGLEGLESLKEAFRVALEAARKPLP---ENGLYFPPGL 630
            L ++S   R++   +A++ + SF  +         +RY  TDA   +LRKTLG PIPL+DHAVSV +PKWQHVVGYEEGD DVT+K++LGYPRFVYHPFVKQLVD+WKA AVE GA+A HE+V ALPFPS+G+AERCRRFL +AH HEPGFPV +H +GV+DT++V+FP+ AA +AKAYWQHSGEILSSRKAARVLA LGHPV TL++G P++   S+S +     A+A   A P CYR+ L+ERI+ LTGQ   DV+LTI+GMAAIF AF++C+QARP R VVVFGFTYLDTLKICLRKEWN+HGVHFLG+GD  DL  LE +L+++E+MAVFTEFPSNPLLQ PDL +L  LGR YGFPVVVDDTISNF NVDLM     R GG  GG+DM VSSLTKLFSGK DVMAGSLVLN  SP Y  LR AME       EG  G+DAELYEEDA+VVWEN RDFEERSRRINETT  LVEWL  + GV EV YPSRTQ+ IYD F+R EGGYGGLFSVSL   LSPTAFYDALDV+KGPSLGTNFTLACPYTLLAHY ELDFAR HGVCPNLVRVSVGLE  E L++ F VAL++AR+P+P       YFPPGL
Sbjct:   15 LKAASRGRRSIRPSSASSLSPSFLNVGVLCKHLSVERYE-TDA---ELRKTLGMPIPLDDHAVSVALPKWQHVVGYEEGDVDVTEKMLLGYPRFVYHPFVKQLVDLWKAGAVESGAVAGHEIVEALPFPSMGSAERCRRFLLEAHKHEPGFPVGIHSLGVLDTHVVSFPAMAAKDAKAYWQHSGEILSSRKAARVLACLGHPVPTLLDGLPTSPRPSASCAPGARTASA---AVPDCYRRGLRERIADLTGQHMVDVHLTITGMAAIFMAFNMCRQARPGRPVVVFGFTYLDTLKICLRKEWNAHGVHFLGKGDARDLSVLEELLEKKEVMAVFTEFPSNPLLQNPDLSRLVALGRRYGFPVVVDDTISNFHNVDLM-----RVGGAGGGVDMCVSSLTKLFSGKSDVMAGSLVLNRASPLYGGLRTAMET-----MEG--GNDAELYEEDARVVWENARDFEERSRRINETTGRLVEWLGNQAGVAEVFYPSRTQRAIYDAFKRAEGGYGGLFSVSLSPSLSPTAFYDALDVFKGPSLGTNFTLACPYTLLAHYYELDFARRHGVCPNLVRVSVGLESFEHLQKVFEVALDSARRPIPTGVAREKYFPPGL 607
The following BLAST results are available for this feature:
BLAST of NO12G03430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25704.12.000e-23268.46cystathionine gamma-synthase [Nannochloropsis gadi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO12G03430NO12G03430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO12G03430.1NO12G03430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO12G03430.1.cds1NO12G03430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO12G03430.1 ID=NO12G03430.1|Name=NO12G03430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1947bp
ACAGGCTATACTAACAGGGCATTACGTCAAGCAGCTGGGGGATTGTTTCG
AATGCTCCGCCGGCCTCTGTTGTGCTTGTACGGCCACGCTGCGAGGCCAG
AACCATCAGTGTTGCCATCATCATCAACGCTTGCTCGCGCTTTGACCTCC
GTCACTGCCACTGCTAGTACCCAGTCCTTTCATAAAATATGCACGCGGCC
CTTGCCAACACCAAGGCAAAGATACCGCCACACCGATGCCACTGCAGTAC
AGCTGCGGAAGACGCTGGGTGCGCCCATCCCCTTGAATGACCACGCCGTG
TCCGTGACCATGCCCAAGTGGCAGCACGTGGTGGGTTACGAGGAAGGCGA
CGCCGACGTGACCGACAAGCTTGTGCTAGGATACCCCCGCTTTGTCTACC
ATCCGTTCGTGAAGCAATTGGTTGATGTGTGGAAGGCACATGCTGTCGAG
GTAGGCGCCATCGCCGCACATGAAGTGGTTGGGGCCCTGCCCTTCCCCTC
ACTAGGTACAGCGGAGCGTTGCCGTCGTTTCCTGGAAGATGCGCACGCGC
ACGAGCCAGGGTTTCCTGTGAATTTGCATCCTGTGGGTGTCATGGACACT
TACATTGTCACATTCCCCTCTTTTGCCGCAGGAGAGGCGAAGGCATACTG
GCAACACAGTGGGGAAATCTTGTCCTCGCGCAAGGCCGCGCGGGTGCTGG
CGTCGTTGGGTCATCCTGTCTCTACCTTGGTCAACGGCTTCCCATCTGCT
GCCCCTCTCTCCTCCTCTACTTCGTCCTCTACTGTAGCTGCAACGGCAGT
GGGCGAGGCAAGGCCTGGGTGCTACCGACAGGCCTTGAAGGAACGAATAA
GCGCCTTGACCGGTCAACGGGAGGAAGACGTGTACCTGACAATCAGTGGC
ATGGCCGCCATCTTCAAGGCATTCCATATATGCAAGCAAGCCCGTCCGAA
CCGTCGGGTGGTGGTGTTCGGCTTCACCTACCTCGACACCCTCAAGATTT
GTCTACGGAAGGAGTGGAACAGTCATGGGGTCCATTTCCTGGGAAGGGGC
GACGTCGCCGATCTCAAGACACTCGAGGGCATCCTGAAAGAAGAGGAGAT
TATGGCGGTGTTCACCGAGTTTCCTTCAAATCCCTTGCTCCAGTGTCCAG
ATCTGGGGAAATTAACGGAGCTGGGGAGGGAGTATGGGTTCCCGGTGGTG
GTGGATGACACGATTTCGAACTTTGACAATGTGGATCTGATGGGAGCCGA
ACGAGGGAGGGAGGGCGGGGGGTATGGAGGGATAGACATGAGTGTCAGTA
GCTTGACGAAGCTGTTTTCGGGCAAGGGGGATGTGATGGCCGGTAGTTTG
GTGTTGAACGGCAAGAGCCCTTCATATAAGGAGTTGAGGCGGGCGATGGA
GGAAGGGAAAGAGGGGGGGAGGGAGGGAGGGTTAGGGGACGATGCAGAGT
TGTATGAGGAGGACGCAAAGGTTGTATGGGAGAACGGGAGGGATTTTGAG
GAAAGGTCGAGGAGAATCAACGAGACGACGAGGGGGCTGGTAGAATGGCT
GGTGGGGGAGGAGGGGGTGGAGGAAGTGTCTTACCCCAGTAGGACCCAAA
AAGAGATATACGATCGCTTCCGACGGAGGGAGGGAGGATACGGGGGACTC
TTTTCTGTGTCGTTGAAGGAGGGGCTGTCGCCGACGGCGTTTTATGATGC
CTTGGACGTGTATAAAGGGCCTAGTCTGGGAACGAATTTCACGCTGGCAT
GCCCATACACCCTCCTCGCCCACTACAACGAGCTGGACTTCGCAAGGAGT
CACGGCGTGTGCCCGAATCTGGTGCGGGTGTCGGTGGGTTTGGAAGGATT
GGAGAGCTTGAAGGAGGCGTTCAGGGTGGCCCTGGAAGCGGCAAGAAAGC
CGTTGCCGGAGAATGGATTGTACTTCCCACCGGGCTTGAGGATGTAG
back to top

protein sequence of NO12G03430.1

>NO12G03430.1-protein ID=NO12G03430.1-protein|Name=NO12G03430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MLRRPLLCLYGHAARPEPSVLPSSSTLARALTSVTATASTQSFHKICTRP
LPTPRQRYRHTDATAVQLRKTLGAPIPLNDHAVSVTMPKWQHVVGYEEGD
ADVTDKLVLGYPRFVYHPFVKQLVDVWKAHAVEVGAIAAHEVVGALPFPS
LGTAERCRRFLEDAHAHEPGFPVNLHPVGVMDTYIVTFPSFAAGEAKAYW
QHSGEILSSRKAARVLASLGHPVSTLVNGFPSAAPLSSSTSSSTVAATAV
GEARPGCYRQALKERISALTGQREEDVYLTISGMAAIFKAFHICKQARPN
RRVVVFGFTYLDTLKICLRKEWNSHGVHFLGRGDVADLKTLEGILKEEEI
MAVFTEFPSNPLLQCPDLGKLTELGREYGFPVVVDDTISNFDNVDLMGAE
RGREGGGYGGIDMSVSSLTKLFSGKGDVMAGSLVLNGKSPSYKELRRAME
EGKEGGREGGLGDDAELYEEDAKVVWENGRDFEERSRRINETTRGLVEWL
VGEEGVEEVSYPSRTQKEIYDRFRRREGGYGGLFSVSLKEGLSPTAFYDA
LDVYKGPSLGTNFTLACPYTLLAHYNELDFARSHGVCPNLVRVSVGLEGL
ESLKEAFRVALEAARKPLPENGLYFPPGLRM*
back to top

mRNA from alignment at chr12:940385..942331+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO12G03430.1 ID=NO12G03430.1|Name=NO12G03430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1947bp|location=Sequence derived from alignment at chr12:940385..942331+ (Nannochloropsis oceanica)
ACAGGCTATACTAACAGGGCATTACGTCAAGCAGCTGGGGGATTGTTTCG
AATGCTCCGCCGGCCTCTGTTGTGCTTGTACGGCCACGCTGCGAGGCCAG
AACCATCAGTGTTGCCATCATCATCAACGCTTGCTCGCGCTTTGACCTCC
GTCACTGCCACTGCTAGTACCCAGTCCTTTCATAAAATATGCACGCGGCC
CTTGCCAACACCAAGGCAAAGATACCGCCACACCGATGCCACTGCAGTAC
AGCTGCGGAAGACGCTGGGTGCGCCCATCCCCTTGAATGACCACGCCGTG
TCCGTGACCATGCCCAAGTGGCAGCACGTGGTGGGTTACGAGGAAGGCGA
CGCCGACGTGACCGACAAGCTTGTGCTAGGATACCCCCGCTTTGTCTACC
ATCCGTTCGTGAAGCAATTGGTTGATGTGTGGAAGGCACATGCTGTCGAG
GTAGGCGCCATCGCCGCACATGAAGTGGTTGGGGCCCTGCCCTTCCCCTC
ACTAGGTACAGCGGAGCGTTGCCGTCGTTTCCTGGAAGATGCGCACGCGC
ACGAGCCAGGGTTTCCTGTGAATTTGCATCCTGTGGGTGTCATGGACACT
TACATTGTCACATTCCCCTCTTTTGCCGCAGGAGAGGCGAAGGCATACTG
GCAACACAGTGGGGAAATCTTGTCCTCGCGCAAGGCCGCGCGGGTGCTGG
CGTCGTTGGGTCATCCTGTCTCTACCTTGGTCAACGGCTTCCCATCTGCT
GCCCCTCTCTCCTCCTCTACTTCGTCCTCTACTGTAGCTGCAACGGCAGT
GGGCGAGGCAAGGCCTGGGTGCTACCGACAGGCCTTGAAGGAACGAATAA
GCGCCTTGACCGGTCAACGGGAGGAAGACGTGTACCTGACAATCAGTGGC
ATGGCCGCCATCTTCAAGGCATTCCATATATGCAAGCAAGCCCGTCCGAA
CCGTCGGGTGGTGGTGTTCGGCTTCACCTACCTCGACACCCTCAAGATTT
GTCTACGGAAGGAGTGGAACAGTCATGGGGTCCATTTCCTGGGAAGGGGC
GACGTCGCCGATCTCAAGACACTCGAGGGCATCCTGAAAGAAGAGGAGAT
TATGGCGGTGTTCACCGAGTTTCCTTCAAATCCCTTGCTCCAGTGTCCAG
ATCTGGGGAAATTAACGGAGCTGGGGAGGGAGTATGGGTTCCCGGTGGTG
GTGGATGACACGATTTCGAACTTTGACAATGTGGATCTGATGGGAGCCGA
ACGAGGGAGGGAGGGCGGGGGGTATGGAGGGATAGACATGAGTGTCAGTA
GCTTGACGAAGCTGTTTTCGGGCAAGGGGGATGTGATGGCCGGTAGTTTG
GTGTTGAACGGCAAGAGCCCTTCATATAAGGAGTTGAGGCGGGCGATGGA
GGAAGGGAAAGAGGGGGGGAGGGAGGGAGGGTTAGGGGACGATGCAGAGT
TGTATGAGGAGGACGCAAAGGTTGTATGGGAGAACGGGAGGGATTTTGAG
GAAAGGTCGAGGAGAATCAACGAGACGACGAGGGGGCTGGTAGAATGGCT
GGTGGGGGAGGAGGGGGTGGAGGAAGTGTCTTACCCCAGTAGGACCCAAA
AAGAGATATACGATCGCTTCCGACGGAGGGAGGGAGGATACGGGGGACTC
TTTTCTGTGTCGTTGAAGGAGGGGCTGTCGCCGACGGCGTTTTATGATGC
CTTGGACGTGTATAAAGGGCCTAGTCTGGGAACGAATTTCACGCTGGCAT
GCCCATACACCCTCCTCGCCCACTACAACGAGCTGGACTTCGCAAGGAGT
CACGGCGTGTGCCCGAATCTGGTGCGGGTGTCGGTGGGTTTGGAAGGATT
GGAGAGCTTGAAGGAGGCGTTCAGGGTGGCCCTGGAAGCGGCAAGAAAGC
CGTTGCCGGAGAATGGATTGTACTTCCCACCGGGCTTGAGGATGTAG
back to top

Coding sequence (CDS) from alignment at chr12:940385..942331+

>NO12G03430.1 ID=NO12G03430.1|Name=NO12G03430.1|organism=Nannochloropsis oceanica|type=CDS|length=1896bp|location=Sequence derived from alignment at chr12:940385..942331+ (Nannochloropsis oceanica)
ATGCTCCGCCGGCCTCTGTTGTGCTTGTACGGCCACGCTGCGAGGCCAGA
ACCATCAGTGTTGCCATCATCATCAACGCTTGCTCGCGCTTTGACCTCCG
TCACTGCCACTGCTAGTACCCAGTCCTTTCATAAAATATGCACGCGGCCC
TTGCCAACACCAAGGCAAAGATACCGCCACACCGATGCCACTGCAGTACA
GCTGCGGAAGACGCTGGGTGCGCCCATCCCCTTGAATGACCACGCCGTGT
CCGTGACCATGCCCAAGTGGCAGCACGTGGTGGGTTACGAGGAAGGCGAC
GCCGACGTGACCGACAAGCTTGTGCTAGGATACCCCCGCTTTGTCTACCA
TCCGTTCGTGAAGCAATTGGTTGATGTGTGGAAGGCACATGCTGTCGAGG
TAGGCGCCATCGCCGCACATGAAGTGGTTGGGGCCCTGCCCTTCCCCTCA
CTAGGTACAGCGGAGCGTTGCCGTCGTTTCCTGGAAGATGCGCACGCGCA
CGAGCCAGGGTTTCCTGTGAATTTGCATCCTGTGGGTGTCATGGACACTT
ACATTGTCACATTCCCCTCTTTTGCCGCAGGAGAGGCGAAGGCATACTGG
CAACACAGTGGGGAAATCTTGTCCTCGCGCAAGGCCGCGCGGGTGCTGGC
GTCGTTGGGTCATCCTGTCTCTACCTTGGTCAACGGCTTCCCATCTGCTG
CCCCTCTCTCCTCCTCTACTTCGTCCTCTACTGTAGCTGCAACGGCAGTG
GGCGAGGCAAGGCCTGGGTGCTACCGACAGGCCTTGAAGGAACGAATAAG
CGCCTTGACCGGTCAACGGGAGGAAGACGTGTACCTGACAATCAGTGGCA
TGGCCGCCATCTTCAAGGCATTCCATATATGCAAGCAAGCCCGTCCGAAC
CGTCGGGTGGTGGTGTTCGGCTTCACCTACCTCGACACCCTCAAGATTTG
TCTACGGAAGGAGTGGAACAGTCATGGGGTCCATTTCCTGGGAAGGGGCG
ACGTCGCCGATCTCAAGACACTCGAGGGCATCCTGAAAGAAGAGGAGATT
ATGGCGGTGTTCACCGAGTTTCCTTCAAATCCCTTGCTCCAGTGTCCAGA
TCTGGGGAAATTAACGGAGCTGGGGAGGGAGTATGGGTTCCCGGTGGTGG
TGGATGACACGATTTCGAACTTTGACAATGTGGATCTGATGGGAGCCGAA
CGAGGGAGGGAGGGCGGGGGGTATGGAGGGATAGACATGAGTGTCAGTAG
CTTGACGAAGCTGTTTTCGGGCAAGGGGGATGTGATGGCCGGTAGTTTGG
TGTTGAACGGCAAGAGCCCTTCATATAAGGAGTTGAGGCGGGCGATGGAG
GAAGGGAAAGAGGGGGGGAGGGAGGGAGGGTTAGGGGACGATGCAGAGTT
GTATGAGGAGGACGCAAAGGTTGTATGGGAGAACGGGAGGGATTTTGAGG
AAAGGTCGAGGAGAATCAACGAGACGACGAGGGGGCTGGTAGAATGGCTG
GTGGGGGAGGAGGGGGTGGAGGAAGTGTCTTACCCCAGTAGGACCCAAAA
AGAGATATACGATCGCTTCCGACGGAGGGAGGGAGGATACGGGGGACTCT
TTTCTGTGTCGTTGAAGGAGGGGCTGTCGCCGACGGCGTTTTATGATGCC
TTGGACGTGTATAAAGGGCCTAGTCTGGGAACGAATTTCACGCTGGCATG
CCCATACACCCTCCTCGCCCACTACAACGAGCTGGACTTCGCAAGGAGTC
ACGGCGTGTGCCCGAATCTGGTGCGGGTGTCGGTGGGTTTGGAAGGATTG
GAGAGCTTGAAGGAGGCGTTCAGGGTGGCCCTGGAAGCGGCAAGAAAGCC
GTTGCCGGAGAATGGATTGTACTTCCCACCGGGCTTGAGGATGTAG
back to top
Synonyms
Publications