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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr12 | genome | chr12:506722..509373 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01700.1 vs.
Match: XP_005856113.1 (atpase family aaa domain-containing protein 3 [Nannochloropsis gaditana CCMP526]; EKU20249.1 atpase family aaa domain-containing protein 3 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 901.0 bits (2327), Expect = 2.000e-258 Identity = 485/549 (88.34%), Postives = 513/549 (93.44%), Query Frame = 0
Query: 52 LERAAKAAKELDKSTNAREALKLIELQEVTKQREADSRRTEYEAHVKSLEIQRAQKEGEEARKTLDSQTEHEKRRAEYRDQLERKRYVDQLNAEKYRKEEELRKQEEYLAKQESIKRKTLEYEAELRQQTELARVKAETEGRIKQERQNHDLRVAQARAEAKEYRETVLEGIRLASVQVGKGLQEFLADKERLTSAAVALSALALGIYTAKTSTGVAGRYIEARMGKPSLVRDTSRRTALQVLKNPVPTLRRLLTSAKAEDALKGVILEQGLTERLTRVAISTANTKANGAPFRNLLLHGPPGTGKTLFAKGLAANSGLDYAILTGGDVAPLGKEAVTEIHKVFDWAQTTRKGVLLFVDEADAFLRRRSTEHMSEELRNALNAFLYRTGEASDKFMVVFASNQPEQFDWAINDRIDEMVDFDLPGEEERLQMVTMYLEKYVLNPPSAKARPITVMGVGEEEVKEAARLTVGFSGREISKLAIAWQAAAYGASGEAAVLDKELFVRVLDQHLVAKRKKKGWLDAALSTLPGAGGKEGVGALVMEELPPKK 601
+ AAKAAKELDKSTNAREALKLIELQEV+KQREA++RRTEYEAHVKSLEIQRAQKEGEEARKTLDSQTEHEKRRAEYRDQLERKRYVDQLNAEKYRKEEELRKQEEYLAKQE+IKRKTLEYEAELRQQTELARVKAETEGRIKQERQNHDLRVAQARAEAKEYRETVLEGI+LAS ++GKGLQEFL DKERLTSAAV LSA+ALG+Y AKTSTGVAGRYIEAR+GKPSLVRDTSRRTALQVL+NPVP+LRRLLT+ KAEDALKGV+LE+GLTERLTRVAISTANTKANGAPFRNLLLHGPPGTGKTLFAKGLAANSGLDYAILTGGDVAPLGKEAVTEIHKVFDWA TTRKGVLLFVDEADAFLRRRSTEHMSEELRNALNAFLYRTGEASDKFMVVFASNQPEQFDWAINDRIDEMVDF+LPGEEERL+MVT+YLEKYVLNPPS KARPITV G+GEEEVK AA++TVGFSGREISKLAIAWQAAAYGA A LDKELF+RVL+QHL +KRKKK W +A+L P GK + E P K
Sbjct: 1 MRSAAKAAKELDKSTNAREALKLIELQEVSKQREAEARRTEYEAHVKSLEIQRAQKEGEEARKTLDSQTEHEKRRAEYRDQLERKRYVDQLNAEKYRKEEELRKQEEYLAKQEAIKRKTLEYEAELRQQTELARVKAETEGRIKQERQNHDLRVAQARAEAKEYRETVLEGIKLASTELGKGLQEFLTDKERLTSAAVTLSAVALGVYAAKTSTGVAGRYIEARLGKPSLVRDTSRRTALQVLRNPVPSLRRLLTTTKAEDALKGVVLEKGLTERLTRVAISTANTKANGAPFRNLLLHGPPGTGKTLFAKGLAANSGLDYAILTGGDVAPLGKEAVTEIHKVFDWAGTTRKGVLLFVDEADAFLRRRSTEHMSEELRNALNAFLYRTGEASDKFMVVFASNQPEQFDWAINDRIDEMVDFNLPGEEERLEMVTIYLEKYVLNPPSTKARPITVEGIGEEEVKYAAKVTVGFSGREISKLAIAWQAAAYGAREGTATLDKELFLRVLEQHLASKRKKKDWFEASLPGGPEVEGKAWEALVTDGEGPSSK 549
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01700.1 ID=NO12G01700.1|Name=NO12G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2516bp
GTTGGAGGCATGGTGGGAGGCGGCGGCCCAGGACATTTCGCTTCGTCATA
CATGTTCTCACTCTAAAGCACAACTCCAAGCTCACCCAAGCAGATATCGG
AAGACAAAATGACTGTGGCGACAGCGCCGTGATTGGCAGATAAGCTGCCA
ACACAGGCGCCGGCGGCAAGGAAATGGACGGCCAGCAGCAGTCCTGTTCC
GCCGAGTATCTAACAAAAAAAGCACTGCATCGATGATGCCGCCTACTTAC
TAAACTAAATAATATACGCTTAATATCAACTCTTACGTGGACGTTTCGCT
AAAAGGAAAGTAGGAAGAAGCACACATGCTGCGTTCCTTAGGCTGCGCAA
TGCTCTTAGTTGCCTTGCTCCTCACTTATGCCCCATTTCCCCATATCCCG
TCCAATCCATACCACGTCGACACTCTTACAACCAATACACAAGGGTCATG
TTCAGTGGCATTTTCCCCAAGAAGCCGGACACGGCGGGGGAGAAGGCCCT
AGCACAGGCCTTGGGAGGGGGCGGGGAGGACGACGATGACAGCAGCAGCA
GGAGCAAAAAGGGCGGCGGCAAGGGTACCGGCTTGTTTGATCCGTCGGGA
CTGGAGCGGGCCGCCAAAGCCGCGAAAGAACTCGATAAATCTACCAATGC
CCGAGAAGCGTTGAAGCTGATTGAGCTGCAAGAGGTGACGAAGCAACGCG
AGGCAGACTCCAGGCGGACCGAGTACGAGGCCCACGTCAAGAGCTTAGAA
ATCCAACGCGCCCAAAAAGAAGGGGAAGAAGCCCGCAAGACCCTCGACTC
CCAAACGGAGCATGAGAAGCGTCGGGCAGAATATCGCGATCAGCTGGAGC
GCAAGCGGTATGTTGATCAGCTGAATGCAGAAAAGTACCGAAAAGAGGAA
GAGCTGCGGAAGCAGGAAGAGTACCTCGCCAAGCAAGAATCCATCAAACG
CAAGACCCTAGAATATGAAGCTGAACTCCGGCAACAAACCGAATTGGCAC
GGGTCAAGGCCGAGACGGAGGGGAGGATCAAGCAAGAGAGACAGAACCAT
GATTTGAGGGTCGCTCAGGCACGGGCGGAAGCTAAGGAGTATAGGGAGAC
GGTGTTAGAGGGGATTAGACTTGCCAGCGTTCAAGTGGGGAAGGGGCTCC
AGGAGTTTTTAGCGGACAAAGAACGGCTGACATCAGCAGCAGTGGCCCTC
TCGGCGTTAGCGCTCGGGATTTACACGGCGAAGACCTCCACTGGGGTAGC
AGGACGGTATATCGAAGCTAGGATGGGTAAGCCCTCCTTGGTCCGCGACA
CATCCCGACGGACTGCTCTACAGGTGCTGAAGAATCCCGTACCAACCCTC
CGTCGGCTCCTCACCTCGGCCAAAGCTGAGGACGCTCTAAAGGGGGTGAT
CCTCGAGCAGGGGTTAACGGAACGTTTGACGCGAGTGGCAATTTCCACGG
CCAATACCAAGGCGAACGGCGCACCTTTCCGAAACCTGCTTTTGCACGGG
CCACCCGGGACGGGGAAAACATTATTTGCCAAGGGTTTAGCGGCAAACAG
TGGGTTGGATTATGCGATTTTGACAGGGGGGGATGTGGCACCCTTGGGGA
AGGAGGCCGTGACGGAGATTCATAAGGTTTTCGACTGGGCGCAAACGACG
AGGAAGGGCGTGCTGTTGTTTGTGGATGAGGCAGACGCTTTTCTCCGGAG
AAGGAGTACTGAGCACATGTCGGAGGAGTTAAGGAATGCGTTGAATGCCT
TCTTGTATCGAACGGGGGAGGCCAGCGATAAGTTTATGGTGGTGTTTGCG
AGCAACCAGCCCGAGCAGTTTGATTGGGCAATCAATGACCGCATTGACGA
AATGGTCGATTTTGATTTGCCCGGGGAAGAAGAACGCTTGCAAATGGTGA
CGATGTACTTGGAGAAATACGTGCTGAATCCTCCGTCGGCAAAGGCAAGG
CCGATTACAGTCATGGGAGTTGGGGAGGAGGAGGTGAAGGAGGCGGCGAG
GCTGACGGTGGGGTTCTCGGGGCGGGAGATATCCAAGCTGGCGATTGCGT
GGCAGGCGGCGGCTTATGGTGCGAGTGGGGAGGCAGCTGTTTTGGACAAA
GAATTGTTTGTGAGGGTGTTAGATCAGCACCTGGTGGCGAAAAGGAAGAA
GAAGGGCTGGCTGGATGCGGCCTTGTCGACGTTGCCCGGCGCGGGAGGGA
AGGAAGGAGTTGGGGCGTTGGTGATGGAGGAATTGCCACCAAAGAAGTGA
AAGTAGTTTTCAGGAAAAGGGATGGGGGGCTGACACGACAATGCGATGCT
ATTTAGCTTCTGTTTGGTGAAAACGTGCGTGACAAAGAGAAAATAGAGGA
GGTGTGTGAGTTAAGGAGTAATTGGGCAATCAAGAGGACGAAAATGAGCA
ATGTAAGATGGTCATGCGCTTGCCCCCGACTGCGACCGAGGAGAAGAAAC
AAGCAAGTGTGCGCATTTTGAGACTGCAACAAGGACACCAGAAGCTTAAC
AATCGCCTATCGATTA back to topprotein sequence of NO12G01700.1 >NO12G01700.1-protein ID=NO12G01700.1-protein|Name=NO12G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=601bp
MFSGIFPKKPDTAGEKALAQALGGGGEDDDDSSSRSKKGGGKGTGLFDPS
GLERAAKAAKELDKSTNAREALKLIELQEVTKQREADSRRTEYEAHVKSL
EIQRAQKEGEEARKTLDSQTEHEKRRAEYRDQLERKRYVDQLNAEKYRKE
EELRKQEEYLAKQESIKRKTLEYEAELRQQTELARVKAETEGRIKQERQN
HDLRVAQARAEAKEYRETVLEGIRLASVQVGKGLQEFLADKERLTSAAVA
LSALALGIYTAKTSTGVAGRYIEARMGKPSLVRDTSRRTALQVLKNPVPT
LRRLLTSAKAEDALKGVILEQGLTERLTRVAISTANTKANGAPFRNLLLH
GPPGTGKTLFAKGLAANSGLDYAILTGGDVAPLGKEAVTEIHKVFDWAQT
TRKGVLLFVDEADAFLRRRSTEHMSEELRNALNAFLYRTGEASDKFMVVF
ASNQPEQFDWAINDRIDEMVDFDLPGEEERLQMVTMYLEKYVLNPPSAKA
RPITVMGVGEEEVKEAARLTVGFSGREISKLAIAWQAAAYGASGEAAVLD
KELFVRVLDQHLVAKRKKKGWLDAALSTLPGAGGKEGVGALVMEELPPKK
* back to topmRNA from alignment at chr12:506722..509373- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01700.1 ID=NO12G01700.1|Name=NO12G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2652bp|location=Sequence derived from alignment at chr12:506722..509373- (Nannochloropsis oceanica)
GTTGGAGGCATGGTGGGAGGCGGCGGCCCAGGACATTTCGCTTCGTCATA
CATGTTCTCACTCTAAAGCACAACTCCAAGCTCACCCAAGCAGATATCGG
AAGACAAAATGACTGTGGCGACAGCGCCGTGATTGGCAGATAAGCTGCCA
ACACAGGCGCCGGCGGCAAGGAAATGGACGGCCAGCAGCAGTCCTGTTCC
GCCGAGTATCTAACAAAAAAAGCACTGCATCGATGATGCCGCCTACTTAC
TAAACTAAATAATATACGCTTAATATCAACTCTTACGTGGACGTTTCGCT
AAAAGGAAAGTAGGAAGAAGCACACATGCTGCGTTCCTTAGGCTGCGCAA
TGCTCTTAGTTGCCTTGCTCCTCACTTATGCCCCATTTCCCCATATCCCG
TCCAATCCATACCACGTCGACACTCTTACAACCAATACACAAGGGTCATG
TTCAGTGGCATTTTCCCCAAGAAGCCGGACACGGCGGGGGAGAAGGCCCT
AGCACAGGCCTTGGGAGGGGGCGGGGAGGACGACGATGACAGCAGCAGCA
GGAGCAAAAAGGGCGGCGGCAAGGGTACCGGCTTGTTTGATCCGTCGGGA
CTGGAGCGGTGCGTTGATGAATGATTTGGCGTGATACTTGTTTTCAAGCG
GTGACGTCCAGTTGGCAACAGCTTTCCATAGATACAATCCGCTCACACAG
CCCCTTCTTTTTCCTCCCTTCTCTCCCTTCCGCACTCCATACAGGGCCGC
CAAAGCCGCGAAAGAACTCGATAAATCTACCAATGCCCGAGAAGCGTTGA
AGCTGATTGAGCTGCAAGAGGTGACGAAGCAACGCGAGGCAGACTCCAGG
CGGACCGAGTACGAGGCCCACGTCAAGAGCTTAGAAATCCAACGCGCCCA
AAAAGAAGGGGAAGAAGCCCGCAAGACCCTCGACTCCCAAACGGAGCATG
AGAAGCGTCGGGCAGAATATCGCGATCAGCTGGAGCGCAAGCGGTATGTT
GATCAGCTGAATGCAGAAAAGTACCGAAAAGAGGAAGAGCTGCGGAAGCA
GGAAGAGTACCTCGCCAAGCAAGAATCCATCAAACGCAAGACCCTAGAAT
ATGAAGCTGAACTCCGGCAACAAACCGAATTGGCACGGGTCAAGGCCGAG
ACGGAGGGGAGGATCAAGCAAGAGAGACAGAACCATGATTTGAGGGTCGC
TCAGGCACGGGCGGAAGCTAAGGAGTATAGGGAGACGGTGTTAGAGGGGA
TTAGACTTGCCAGCGTTCAAGTGGGGAAGGGGCTCCAGGAGTTTTTAGCG
GACAAAGAACGGCTGACATCAGCAGCAGTGGCCCTCTCGGCGTTAGCGCT
CGGGATTTACACGGCGAAGACCTCCACTGGGGTAGCAGGACGGTATATCG
AAGCTAGGATGGGTAAGCCCTCCTTGGTCCGCGACACATCCCGACGGACT
GCTCTACAGGTGCTGAAGAATCCCGTACCAACCCTCCGTCGGCTCCTCAC
CTCGGCCAAAGCTGAGGACGCTCTAAAGGGGGTGATCCTCGAGCAGGGGT
TAACGGAACGTTTGACGCGAGTGGCAATTTCCACGGCCAATACCAAGGCG
AACGGCGCACCTTTCCGAAACCTGCTTTTGCACGGGCCACCCGGGACGGG
GAAAACATTATTTGCCAAGGGTTTAGCGGCAAACAGTGGGTTGGATTATG
CGATTTTGACAGGGGGGGATGTGGCACCCTTGGGGAAGGAGGCCGTGACG
GAGATTCATAAGGTTTTCGACTGGGCGCAAACGACGAGGAAGGGCGTGCT
GTTGTTTGTGGATGAGGCAGACGCTTTTCTCCGGAGAAGGAGTACTGAGC
ACATGTCGGAGGAGTTAAGGAATGCGTTGAATGCCTTCTTGTATCGAACG
GGGGAGGCCAGCGATAAGTTTATGGTGGTGTTTGCGAGCAACCAGCCCGA
GCAGTTTGATTGGGCAATCAATGACCGCATTGACGAAATGGTCGATTTTG
ATTTGCCCGGGGAAGAAGAACGCTTGCAAATGGTGACGATGTACTTGGAG
AAATACGTGCTGAATCCTCCGTCGGCAAAGGCAAGGCCGATTACAGTCAT
GGGAGTTGGGGAGGAGGAGGTGAAGGAGGCGGCGAGGCTGACGGTGGGGT
TCTCGGGGCGGGAGATATCCAAGCTGGCGATTGCGTGGCAGGCGGCGGCT
TATGGTGCGAGTGGGGAGGCAGCTGTTTTGGACAAAGAATTGTTTGTGAG
GGTGTTAGATCAGCACCTGGTGGCGAAAAGGAAGAAGAAGGGCTGGCTGG
ATGCGGCCTTGTCGACGTTGCCCGGCGCGGGAGGGAAGGAAGGAGTTGGG
GCGTTGGTGATGGAGGAATTGCCACCAAAGAAGTGAAAGTAGTTTTCAGG
AAAAGGGATGGGGGGCTGACACGACAATGCGATGCTATTTAGCTTCTGTT
TGGTGAAAACGTGCGTGACAAAGAGAAAATAGAGGAGGTGTGTGAGTTAA
GGAGTAATTGGGCAATCAAGAGGACGAAAATGAGCAATGTAAGATGGTCA
TGCGCTTGCCCCCGACTGCGACCGAGGAGAAGAAACAAGCAAGTGTGCGC
ATTTTGAGACTGCAACAAGGACACCAGAAGCTTAACAATCGCCTATCGAT
TA back to topCoding sequence (CDS) from alignment at chr12:506722..509373- >NO12G01700.1 ID=NO12G01700.1|Name=NO12G01700.1|organism=Nannochloropsis oceanica|type=CDS|length=1803bp|location=Sequence derived from alignment at chr12:506722..509373- (Nannochloropsis oceanica)
ATGTTCAGTGGCATTTTCCCCAAGAAGCCGGACACGGCGGGGGAGAAGGC
CCTAGCACAGGCCTTGGGAGGGGGCGGGGAGGACGACGATGACAGCAGCA
GCAGGAGCAAAAAGGGCGGCGGCAAGGGTACCGGCTTGTTTGATCCGTCG
GGACTGGAGCGGGCCGCCAAAGCCGCGAAAGAACTCGATAAATCTACCAA
TGCCCGAGAAGCGTTGAAGCTGATTGAGCTGCAAGAGGTGACGAAGCAAC
GCGAGGCAGACTCCAGGCGGACCGAGTACGAGGCCCACGTCAAGAGCTTA
GAAATCCAACGCGCCCAAAAAGAAGGGGAAGAAGCCCGCAAGACCCTCGA
CTCCCAAACGGAGCATGAGAAGCGTCGGGCAGAATATCGCGATCAGCTGG
AGCGCAAGCGGTATGTTGATCAGCTGAATGCAGAAAAGTACCGAAAAGAG
GAAGAGCTGCGGAAGCAGGAAGAGTACCTCGCCAAGCAAGAATCCATCAA
ACGCAAGACCCTAGAATATGAAGCTGAACTCCGGCAACAAACCGAATTGG
CACGGGTCAAGGCCGAGACGGAGGGGAGGATCAAGCAAGAGAGACAGAAC
CATGATTTGAGGGTCGCTCAGGCACGGGCGGAAGCTAAGGAGTATAGGGA
GACGGTGTTAGAGGGGATTAGACTTGCCAGCGTTCAAGTGGGGAAGGGGC
TCCAGGAGTTTTTAGCGGACAAAGAACGGCTGACATCAGCAGCAGTGGCC
CTCTCGGCGTTAGCGCTCGGGATTTACACGGCGAAGACCTCCACTGGGGT
AGCAGGACGGTATATCGAAGCTAGGATGGGTAAGCCCTCCTTGGTCCGCG
ACACATCCCGACGGACTGCTCTACAGGTGCTGAAGAATCCCGTACCAACC
CTCCGTCGGCTCCTCACCTCGGCCAAAGCTGAGGACGCTCTAAAGGGGGT
GATCCTCGAGCAGGGGTTAACGGAACGTTTGACGCGAGTGGCAATTTCCA
CGGCCAATACCAAGGCGAACGGCGCACCTTTCCGAAACCTGCTTTTGCAC
GGGCCACCCGGGACGGGGAAAACATTATTTGCCAAGGGTTTAGCGGCAAA
CAGTGGGTTGGATTATGCGATTTTGACAGGGGGGGATGTGGCACCCTTGG
GGAAGGAGGCCGTGACGGAGATTCATAAGGTTTTCGACTGGGCGCAAACG
ACGAGGAAGGGCGTGCTGTTGTTTGTGGATGAGGCAGACGCTTTTCTCCG
GAGAAGGAGTACTGAGCACATGTCGGAGGAGTTAAGGAATGCGTTGAATG
CCTTCTTGTATCGAACGGGGGAGGCCAGCGATAAGTTTATGGTGGTGTTT
GCGAGCAACCAGCCCGAGCAGTTTGATTGGGCAATCAATGACCGCATTGA
CGAAATGGTCGATTTTGATTTGCCCGGGGAAGAAGAACGCTTGCAAATGG
TGACGATGTACTTGGAGAAATACGTGCTGAATCCTCCGTCGGCAAAGGCA
AGGCCGATTACAGTCATGGGAGTTGGGGAGGAGGAGGTGAAGGAGGCGGC
GAGGCTGACGGTGGGGTTCTCGGGGCGGGAGATATCCAAGCTGGCGATTG
CGTGGCAGGCGGCGGCTTATGGTGCGAGTGGGGAGGCAGCTGTTTTGGAC
AAAGAATTGTTTGTGAGGGTGTTAGATCAGCACCTGGTGGCGAAAAGGAA
GAAGAAGGGCTGGCTGGATGCGGCCTTGTCGACGTTGCCCGGCGCGGGAG
GGAAGGAAGGAGTTGGGGCGTTGGTGATGGAGGAATTGCCACCAAAGAAG
TGA back to top
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