|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:465020..467547 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01520.4 vs.
Match: EWM25858.1 (Nucleic acid-binding protein [Nannochloropsis gaditana]) HSP 1 Score: 328.9 bits (842), Expect = 1.300e-86 Identity = 164/220 (74.55%), Postives = 192/220 (87.27%), Query Frame = 0
Query: 13 SRSKHAQSMTLLQDLRPGMRLHGGVVGVTDFAAFLDVKVVRKGPGGKLVRCNAMLHPHDVPPGTTLIRDAPPGQARQQQPTPLETDPAVIRRGIHVTVYVKDVFPNSGRFSVTLDPTVDKQKVVIARRQKRELSKKRNKVKKLEGVEEGLEKKAQVVKLLRTALLVDIGLPVPAFLPHSSIPESVPLEDVRQVGVLMTVRLSEKTDKQIKCEMMRLLPPT 233
SRSK +Q++TLLQ LRPGMRLHGGVVGVT+FAAFLDVKVVR+GPGGKLVRCNAMLHPHDVP G L+RD+ QP PLETDP VIRRGIHV+VYVKDVFPNSGRFSVTLDP++DK KV+ AR+QKR L KKRNKVKKLEGVEEG EK+A+VVKLLRTALL+DIG+PVPAFLPH+ IP++VPLE +R +G L+ VR+ E+TD+QIKCEM+ + PP+
Sbjct: 94 SRSKQSQNVTLLQALRPGMRLHGGVVGVTEFAAFLDVKVVREGPGGKLVRCNAMLHPHDVPEGIKLLRDS------HNQPLPLETDPNVIRRGIHVSVYVKDVFPNSGRFSVTLDPSIDKAKVIAARKQKRLLGKKRNKVKKLEGVEEGAEKQARVVKLLRTALLLDIGMPVPAFLPHNYIPDTVPLESIRHLGALLRVRIKERTDRQIKCEMIEVEPPS 307
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01520.4 ID=NO12G01520.4|Name=NO12G01520.4|organism=Nannochloropsis oceanica|type=mRNA|length=1490bp CTCAAGGCAGCTCTTCACCATACATTCTTTCTTTTGCTATCGCCTCACAT TTTGTACACGCTCACAACATACACAAGCACAAGGCATCCATGCAGCAAAG AAGACACACCTCTGCCCAAGTGGCAGCGCTGCTCGTCCTTCTCCTTGTTC CTACCACCCCGTTCCTCTTCAAGCCTGCTCCGTCCACTCACATGGCCCGC CAGCACAAACGTCCTCTGATAAAGCAATACGCAAATGATTTGGAAGGGGA AGGCGCAAAACCCACCACCACGATCGAGATTCATCCTCCCCTCCCTGCTG CTGTCCAGGTGGAGGCAGAAGTGGAAGCGGCAAGGTAAGAAGAGGACGAG GACAGTATCCATTCCGAATCGCGCACCAATATTTGTGTCTCTATCGGTGG CTAGCATGAGCAGGTGGTTCAGCCCTTCTCCCGTATCATTACCTCTGGCC CCCTCCTTCACCAGCCGCAGCAGGCTTGAGCATCGGCCCCGTTCACTCCC ATCTTATCTTATGACTCGAAAGCATAGGCCACTCCTGATACATACTCCTC ATGACCAACCCTCCATTCCTCATTACTACCCTTTATTCCAGGTCCAAACA CGCCCAGAGCATGACGCTCCTCCAGGATCTGCGGCCAGGCATGCGTCTTC ATGGTGGGGTGGTGGGTGTGACAGATTTTGCTGCGTTCTTAGACGTGAAA GTGGTGCGAAAAGGACCCGGTGGGAAGCTGGTCCGCTGCAACGCCATGCT CCATCCCCACGACGTGCCCCCCGGCACCACTCTCATCCGTGACGCTCCCC CTGGCCAAGCCCGTCAACAGCAACCCACGCCTCTCGAGACCGACCCCGCA GTCATCCGTCGCGGTATCCATGTCACCGTGTACGTCAAGGACGTTTTCCC CAACTCCGGGAGGTTCTCGGTCACGCTCGACCCGACCGTGGACAAACAAA AGGTGGTGATCGCTCGAAGGCAGAAGCGAGAATTGAGCAAGAAGAGGAAC AAGGTTAAAAAGCTGGAGGGGGTCGAGGAAGGATTGGAGAAGAAGGCGCA AGTTGTGAAGCTTTTGCGGACAGCCTTGCTGGTCGATATTGGTCTACCCG TGCCAGCCTTTCTTCCACATAGCAGCATCCCAGAATCGGTGCCCTTGGAG GACGTGCGTCAAGTAGGCGTATTAATGACAGTGCGTTTAAGCGAAAAGAC GGACAAGCAAATCAAATGTGAGATGATGAGGCTCTTACCCCCCACATCTA CAGCGCCAGGCAGGGTGGATGAGTGATGAGTGAAATAAGAAGTACCACAT GTCACACAAAGGACGACGACGACGATGTTGTTTAGTGAAGATATCAAGGA AAAGGTGGTAGAAAAAGCACACGCACGGTATCAAAATCGAAAGACAAGAT ACGTAAACCCTTAAAGCAAGTGGAGAAGAAAAAGATATGAAGCCATGAAC GAACAAACAAACACAAAAACAAAAACAAAAACAACTTCCA back to topprotein sequence of NO12G01520.4 >NO12G01520.4-protein ID=NO12G01520.4-protein|Name=NO12G01520.4|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp MTNPPFLITTLYSRSKHAQSMTLLQDLRPGMRLHGGVVGVTDFAAFLDVK VVRKGPGGKLVRCNAMLHPHDVPPGTTLIRDAPPGQARQQQPTPLETDPA VIRRGIHVTVYVKDVFPNSGRFSVTLDPTVDKQKVVIARRQKRELSKKRN KVKKLEGVEEGLEKKAQVVKLLRTALLVDIGLPVPAFLPHSSIPESVPLE DVRQVGVLMTVRLSEKTDKQIKCEMMRLLPPTSTAPGRVDE* back to topmRNA from alignment at chr12:465020..467547- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01520.4 ID=NO12G01520.4|Name=NO12G01520.4|organism=Nannochloropsis oceanica|type=mRNA|length=2528bp|location=Sequence derived from alignment at chr12:465020..467547- (Nannochloropsis oceanica) CTCAAGGCAGCTCTTCACCATACATTCTTTCTTTTGCTATCGCCTCACAT
TTTGTACACGCTCACAACATACACAAGCACAAGGCATCCATGCAGCAAAG
AAGACACACCTCTGCCCAAGTGGCAGCGCTGCTCGTCCTTCTCCTTGTTC
CTACCACCCCGTTCCTCTTCAAGCCTGCTCCGTCCACTCACATGGCCCGC
CAGCACAAACGTCCTCTGATAAAGCAATACGCAAATGATTTGGAAGGGGA
AGGCGCAAAACCCACCACCACGATCGAGATTCATCCTCCCCTCCCTGCTG
CTGTCCAGGTGGAGGCAGAAGTGGAAGCGGCAAGGTAAGAAGAGGACGAG
GACAGTATCCATTCCGAATCGCGCACCAATATTTGTGTCTCTATCGGTGG
CTAGCATGAGCAGGTGGTTCAGCCCTTCTCCCGTATCATTACCTCTGGCC
CCCTCCTTCACCAGCCGCAGCAGGCTTGAGCATCGGCCCCGTTCACTCCC
ATCTTATCTTATGACTCGAAAGCATAGGCCACTCCTGATACATACTCCTC
ATGACCAACCCTCCATTCCTCATTACTACCCTTTATTCCAGGTCCAAACA
CGCCCAGAGCATGACGCTCCTCCAGGATCTGCGGCCAGGCATGCGTCTTC
ATGGTGGGGTGGTGGGTGTGACAGATTTTGCTGCGTTCTTAGACGTGAAA
GTGGTGCGAAAAGGACCCGGTGGGAAGGTGAGTGCTGCAGTGCATCGGCT
ATGGAAAAGGAGATAGGGGAACGGAAAATGAAGGAAGGAGGGGGAAAAGA
GACAATTGTGTAGAGTAGGCATGCTGGATTATGCAGCTTTTTTTGTGGTG
GAGGGTGTGCGGCATGGGCCAGGAGGGAAGCAGAGCGTCGATACAAAGAG
AAGGAAGAAATGGAGAAAAGAGAGGAAAGGGGTATGAGAATGTCCATGAG
CGAAGCACCCGCGCTACAGACAATGCATGCAATGGATGCATGCAGTCTGG
CCCGCAGGTTACCAATGCCGTCAGTCGCTCAACCTGCGGTCGTATCAACG
CCAGACTCTCATCCAATTAATTAAAGGCGGGCCTTTCTGCAAGCTCGAGG
CGTGCAGCTACAACGCCATCCGCCTGCACCATCGCTTTTCCGCTTTTTCC
CTCTCTCCACGTTTGGGCCTGTAACAGATGGTATTATTTAAAGCCGTGCG
TTTACCTCTTCACCCCCCATCCTCCCTCCCACCCTCCCTCCCCTCCCTGC
AGCTGGTCCGCTGCAACGCCATGCTCCATCCCCACGACGTGCCCCCCGGC
ACCACTCTCATCCGTGACGCTCCCCCTGGCCAAGCCCGTCAACAGCAACC
CACGCCTCTCGAGACCGACCCCGCAGTCATCCGTCGCGGTATCCATGTCA
CCGTGTACGTCAAGGACGTTTTCCCCAACTCCGGGAGGTTCTCGGTCACG
CTCGACCCGACCGTGGACAAACAAAAGGTGGTGATCGCTCGAAGGCAGAA
GCGAGAATTGAGCAAGAAGAGGAACAAGGTTAAAAAGCTGGAGGGGGTCG
AGGAAGGATTGGAGAAGAAGGCGCAAGTTGTGAAGGTATGTGGTTGAGAG
GGAGGAAGGGAAGGAGGGAGGGGCACGTTATGGCTTGGTTAAAAGGGGGC
TGTGATGTTATTAGACGAGAACAGCAATATGTCAAAGAATATAGGGGATA
GGGACGGAGGGAGGGGTGAAGGGACGGAGGAGGGAATCGAATTTCTCTAT
TTTCCAATTTGTAGAAGTCCACAATTTCTTCCATTCATTTTCACCTTTTT
GTTGACACGCAACACCAACACCGCACAGCTTTTGCGGACAGCCTTGCTGG
TCGATATTGGTCTACCCGTGCCAGCCTTTCTTCCACATAGCAGCATCCCA
GAATCGGTGCCCTTGGAGGTGCGTCTGTGTCTGTGTGGATTTGTGGATAT
CTGGGGGGGGGTGCTTGCTCGTCGTCGTGTTTCTGGCTGTTTTTTTTTTT
CCTCCCGGGCATTTCACCAGGTATCATGATTTGACACCAAGAGTCGAATC
AGTGCACGACAGTTATATCCACATGCTTCATCATCATATTTGCACTTATT
TGGACAACGCGACTGACCTCCTGTCCCCCTTCCCTTTCCTTCCTCTTCCC
CTTTTTTCCTCCTGTTGCCCCCTCTCTCAAAAACAAAGGACGTGCGTCAA
GTAGGCGTATTAATGACAGTGCGTTTAAGCGAAAAGACGGACAAGCAAAT
CAAATGTGAGATGATGAGGCTCTTACCCCCCACATCTACAGCGCCAGGCA
GGGTGGATGAGTGATGAGTGAAATAAGAAGTACCACATGTCACACAAAGG
ACGACGACGACGATGTTGTTTAGTGAAGATATCAAGGAAAAGGTGGTAGA
AAAAGCACACGCACGGTATCAAAATCGAAAGACAAGATACGTAAACCCTT
AAAGCAAGTGGAGAAGAAAAAGATATGAAGCCATGAACGAACAAACAAAC
ACAAAAACAAAAACAAAAACAACTTCCA back to topCoding sequence (CDS) from alignment at chr12:465020..467547- >NO12G01520.4 ID=NO12G01520.4|Name=NO12G01520.4|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at chr12:465020..467547- (Nannochloropsis oceanica) ATGACCAACCCTCCATTCCTCATTACTACCCTTTATTCCAGGTCCAAACA CGCCCAGAGCATGACGCTCCTCCAGGATCTGCGGCCAGGCATGCGTCTTC ATGGTGGGGTGGTGGGTGTGACAGATTTTGCTGCGTTCTTAGACGTGAAA GTGGTGCGAAAAGGACCCGGTGGGAAGCTGGTCCGCTGCAACGCCATGCT CCATCCCCACGACGTGCCCCCCGGCACCACTCTCATCCGTGACGCTCCCC CTGGCCAAGCCCGTCAACAGCAACCCACGCCTCTCGAGACCGACCCCGCA GTCATCCGTCGCGGTATCCATGTCACCGTGTACGTCAAGGACGTTTTCCC CAACTCCGGGAGGTTCTCGGTCACGCTCGACCCGACCGTGGACAAACAAA AGGTGGTGATCGCTCGAAGGCAGAAGCGAGAATTGAGCAAGAAGAGGAAC AAGGTTAAAAAGCTGGAGGGGGTCGAGGAAGGATTGGAGAAGAAGGCGCA AGTTGTGAAGCTTTTGCGGACAGCCTTGCTGGTCGATATTGGTCTACCCG TGCCAGCCTTTCTTCCACATAGCAGCATCCCAGAATCGGTGCCCTTGGAG GACGTGCGTCAAGTAGGCGTATTAATGACAGTGCGTTTAAGCGAAAAGAC GGACAAGCAAATCAAATGTGAGATGATGAGGCTCTTACCCCCCACATCTA CAGCGCCAGGCAGGGTGGATGAGTGA back to top
|