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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:367563..369123 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01170.1 vs.
Match: EWM25910.1 (aldo keto reductase [Nannochloropsis gaditana]) HSP 1 Score: 572.8 bits (1475), Expect = 8.700e-160 Identity = 314/462 (67.97%), Postives = 347/462 (75.11%), Query Frame = 0
Query: 1 MKKPSLSSWC-LVAAVIALAGCLRKSQAFNILSLSPSALSSRLPRAPATEFSPCFRTSTALHGSSLPPDIPSPTGENSRRRQSRFNKTPKQPEEPKKEARFSKDSHFYTGAIGIGTYSWGDRRDGFFYGDYPSNAMERSQMSCGAFNEQDIEEAFTFLEEAGLPMFDARELYPCEDFLGEMVNHWKKRQLKLQSDVKQI------TKPGPLYW-------GGEKA-----------------------------------IFEAVAQAKRMRLLDNVGVVGYVNEDDLRRVKTTAKSFGIDIKSNSFELSLANPAAALVDGTVAACKNMNIVPFANRPLAGGLAAGTYTMMDPSGGRSRKPRYTFPDLEPLYPIHKALREHAGKYTEKLGKRVNTAQVSINWVRAQGVIPLVGVKTAAQAKDMVEAAKWDLEPEDVKELSQVALDTYKKRRKITEMLAKARR 414
MK + S C +VAA +AL+ LR+S AF + + LS L STAL +SLPPD G SRRRQSRFNK PKQPEEPKK+ +FSKDSHFYTGAIGIGTYSWGDRRDGFFYGDYPSNAMERSQMSCGAFNEQDIEEAFT LEEAGLPMFDARELYPCEDFLGEMV HWKKRQLKLQS VKQ+ + L+ GG +A IFEAVAQAKRMRLLD+VGV+GY+ E+DLRR K AK GI+++SNSFELSLANPAAAL+DGTVAAC+ + I+P ANRPLAGGLAAGTYTMMDPSGGRSRKPRYTFPDLEPLYP+HKALRE AGKYTEKLG+RVNTAQVSINWVRAQGVIP+VGVKT AQAKDMV+AA WDLE EDV+ELS+VALDTY KRRKITE++AKARR
Sbjct: 1 MKNKMVKSACRIVAAAVALSPALRRSFAFQMPAQPHHFLSPSLVVRDGGILKLDQGFSTALRSASLPPD-GERAGLGSRRRQSRFNKEPKQPEEPKKDTKFSKDSHFYTGAIGIGTYSWGDRRDGFFYGDYPSNAMERSQMSCGAFNEQDIEEAFTCLEEAGLPMFDARELYPCEDFLGEMVAHWKKRQLKLQSGVKQVRPFIATSYQARLFGRGLLDVRGGRRAVLRALEHSLEALQATRVDLYQVTKPGPLYWGGEKAIFEAVAQAKRMRLLDHVGVIGYLTEEDLRRAKDVAKQHGINLRSNSFELSLANPAAALLDGTVAACEKLGIMPLANRPLAGGLAAGTYTMMDPSGGRSRKPRYTFPDLEPLYPVHKALREQAGKYTEKLGRRVNTAQVSINWVRAQGVIPVVGVKTGAQAKDMVDAAAWDLEAEDVQELSRVALDTYSKRRKITELIAKARR 461
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01170.1 ID=NO12G01170.1|Name=NO12G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp ATGAAGAAGCCCTCATTATCGTCATGGTGTCTGGTTGCCGCCGTGATCGC CCTGGCCGGCTGCTTGAGGAAAAGCCAGGCATTTAACATTTTATCTCTGT CACCATCAGCATTATCGTCAAGACTTCCACGAGCACCAGCGACGGAATTC AGTCCGTGTTTTCGCACGTCCACAGCTTTGCATGGCAGCTCCCTCCCTCC CGACATCCCTTCTCCTACAGGCGAGAACAGCAGGCGGCGGCAGTCCCGTT TCAATAAGACTCCCAAGCAACCAGAGGAGCCCAAGAAGGAGGCGCGATTT TCGAAAGACTCGCATTTTTACACGGGTGCTATTGGAATAGGCACGTACTC GTGGGGGGATCGGCGGGATGGCTTCTTCTATGGTGATTATCCATCCAACG CTATGGAACGTTCGCAAATGAGCTGCGGCGCCTTCAACGAACAAGACATC GAAGAGGCCTTCACCTTTCTAGAGGAAGCCGGCTTGCCTATGTTTGATGC TCGGGAGCTGTACCCTTGCGAAGATTTTTTGGGCGAGATGGTGAATCATT GGAAGAAACGTCAATTGAAACTACAGAGTGATGTGAAGCAGATCACGAAA CCCGGTCCGTTGTACTGGGGAGGTGAAAAGGCCATTTTTGAGGCCGTGGC CCAAGCGAAACGCATGCGTTTGCTTGATAATGTCGGGGTGGTGGGGTACG TGAACGAAGACGACTTACGACGCGTTAAGACTACTGCGAAATCCTTTGGG ATAGACATCAAAAGCAATTCGTTCGAACTTTCGCTGGCGAACCCGGCGGC GGCCTTGGTGGACGGAACCGTTGCGGCGTGCAAGAACATGAATATTGTGC CCTTTGCAAATCGGCCATTGGCGGGGGGGCTGGCGGCGGGGACTTACACG ATGATGGACCCTAGCGGGGGCAGAAGCCGGAAACCTAGGTACACCTTTCC GGACTTGGAGCCGCTCTACCCCATCCATAAGGCCTTGAGGGAACATGCAG GGAAGTACACGGAGAAACTCGGTAAACGCGTAAATACTGCCCAAGTGTCC ATTAATTGGGTGCGAGCCCAGGGGGTGATTCCGCTCGTAGGGGTCAAAAC TGCGGCGCAAGCCAAGGACATGGTGGAAGCCGCGAAATGGGATTTGGAGC CTGAGGATGTGAAGGAGTTAAGTCAGGTGGCGTTAGATACGTACAAGAAA CGGAGGAAGATCACTGAGATGCTGGCCAAGGCGCGTCGATAG back to topprotein sequence of NO12G01170.1 >NO12G01170.1-protein ID=NO12G01170.1-protein|Name=NO12G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp MKKPSLSSWCLVAAVIALAGCLRKSQAFNILSLSPSALSSRLPRAPATEF SPCFRTSTALHGSSLPPDIPSPTGENSRRRQSRFNKTPKQPEEPKKEARF SKDSHFYTGAIGIGTYSWGDRRDGFFYGDYPSNAMERSQMSCGAFNEQDI EEAFTFLEEAGLPMFDARELYPCEDFLGEMVNHWKKRQLKLQSDVKQITK PGPLYWGGEKAIFEAVAQAKRMRLLDNVGVVGYVNEDDLRRVKTTAKSFG IDIKSNSFELSLANPAAALVDGTVAACKNMNIVPFANRPLAGGLAAGTYT MMDPSGGRSRKPRYTFPDLEPLYPIHKALREHAGKYTEKLGKRVNTAQVS INWVRAQGVIPLVGVKTAAQAKDMVEAAKWDLEPEDVKELSQVALDTYKK RRKITEMLAKARR* back to topmRNA from alignment at chr12:367563..369123- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01170.1 ID=NO12G01170.1|Name=NO12G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1561bp|location=Sequence derived from alignment at chr12:367563..369123- (Nannochloropsis oceanica) ATGAAGAAGCCCTCATTATCGTCATGGTGTCTGGTTGCCGCCGTGATCGC
CCTGGCCGGCTGCTTGAGGAAAAGCCAGGCATTTAACATTTTATCTCTGT
CACCATCAGCATTATCGTCAAGACTTCCACGAGCACCAGCGACGGAATTC
AGTCCGTGTTTTCGCACGTCCACAGCTTTGCATGGCAGCTCCCTCCCTCC
CGACATCCCTTCTCCTACAGGCGAGAACAGCAGGCGGCGGCAGTCCCGTT
TCAATAAGACTCCCAAGCAACCAGAGGAGCCCAAGAAGGAGGCGCGATTT
TCGAAAGACTCGCATTTTTACACGGGTGCTATTGGAATAGGCACGTACTC
GTGGGGGGATCGGCGGGATGGCTTCTTCTATGGTGATGTAAGTTCGACGG
CAGAGAAGGAAGTGGAAGGGAAATGTAAGCGGTGCGGTAAAGAGATCAAA
GCAAGGATAGGAAAAGGTATAAAGAGAAGGGTTATCTTGTTTCGTATAAA
GCCACGTGCGAATCGACCCCTCCCTTTCTCCCTCTTTTCCTCCTTTTTAT
TCTTCTTCTCCAGTATCCATCCAACGCTATGGAACGTTCGCAAATGAGCT
GCGGCGCCTTCAACGAACAAGACATCGAAGAGGCCTTCACCTTTCTAGAG
GAAGCCGGCTTGCCTATGTTTGATGCTCGGGAGCTGTACCCTTGCGAAGA
TTTTTTGGGCGAGATGGTGAATCATTGGAAGAAACGTCAATTGAAACTAC
AGAGTGATGTGAAGCAGGTGCGTCCTTTTATTGCGACCAATTACCAGGCA
AGATTGTTCGGCAAGGGTCTGTTGGATGTCAGGGGGGGAGAAGGGCGGTT
TTGAAGGCGCTAGAAGGTAGTTTAGAAGCATTGCAGGCGACAAGGGTTGA
TTTATATCAGATCACGAAACCCGGTCCGTTGTACTGGGGAGGTGAAAAGG
CCATTTTTGAGGCCGTGGCCCAAGCGAAACGCATGCGTTTGCTTGATAAT
GTCGGGGTGGTGGGGTACGTGAACGAAGACGACTTACGACGCGTTAAGAC
TACTGCGAAATCCTTTGGGATAGACATCAAAAGCAATTCGTTCGAACTTT
CGCTGGCGAACCCGGCGGCGGCCTTGGTGGACGGAACCGTTGCGGCGTGC
AAGAACATGAATATTGTGCCCTTTGCAAATCGGCCATTGGCGGGGGGGCT
GGCGGCGGGGACTTACACGATGATGGACCCTAGCGGGGGCAGAAGCCGGA
AACCTAGGTACACCTTTCCGGACTTGGAGCCGCTCTACCCCATCCATAAG
GCCTTGAGGGAACATGCAGGGAAGTACACGGAGAAACTCGGTAAACGCGT
AAATACTGCCCAAGTGTCCATTAATTGGGTGCGAGCCCAGGGGGTGATTC
CGCTCGTAGGGGTCAAAACTGCGGCGCAAGCCAAGGACATGGTGGAAGCC
GCGAAATGGGATTTGGAGCCTGAGGATGTGAAGGAGTTAAGTCAGGTGGC
GTTAGATACGTACAAGAAACGGAGGAAGATCACTGAGATGCTGGCCAAGG
CGCGTCGATAG back to topCoding sequence (CDS) from alignment at chr12:367563..369123- >NO12G01170.1 ID=NO12G01170.1|Name=NO12G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at chr12:367563..369123- (Nannochloropsis oceanica) ATGAAGAAGCCCTCATTATCGTCATGGTGTCTGGTTGCCGCCGTGATCGC CCTGGCCGGCTGCTTGAGGAAAAGCCAGGCATTTAACATTTTATCTCTGT CACCATCAGCATTATCGTCAAGACTTCCACGAGCACCAGCGACGGAATTC AGTCCGTGTTTTCGCACGTCCACAGCTTTGCATGGCAGCTCCCTCCCTCC CGACATCCCTTCTCCTACAGGCGAGAACAGCAGGCGGCGGCAGTCCCGTT TCAATAAGACTCCCAAGCAACCAGAGGAGCCCAAGAAGGAGGCGCGATTT TCGAAAGACTCGCATTTTTACACGGGTGCTATTGGAATAGGCACGTACTC GTGGGGGGATCGGCGGGATGGCTTCTTCTATGGTGATTATCCATCCAACG CTATGGAACGTTCGCAAATGAGCTGCGGCGCCTTCAACGAACAAGACATC GAAGAGGCCTTCACCTTTCTAGAGGAAGCCGGCTTGCCTATGTTTGATGC TCGGGAGCTGTACCCTTGCGAAGATTTTTTGGGCGAGATGGTGAATCATT GGAAGAAACGTCAATTGAAACTACAGAGTGATGTGAAGCAGATCACGAAA CCCGGTCCGTTGTACTGGGGAGGTGAAAAGGCCATTTTTGAGGCCGTGGC CCAAGCGAAACGCATGCGTTTGCTTGATAATGTCGGGGTGGTGGGGTACG TGAACGAAGACGACTTACGACGCGTTAAGACTACTGCGAAATCCTTTGGG ATAGACATCAAAAGCAATTCGTTCGAACTTTCGCTGGCGAACCCGGCGGC GGCCTTGGTGGACGGAACCGTTGCGGCGTGCAAGAACATGAATATTGTGC CCTTTGCAAATCGGCCATTGGCGGGGGGGCTGGCGGCGGGGACTTACACG ATGATGGACCCTAGCGGGGGCAGAAGCCGGAAACCTAGGTACACCTTTCC GGACTTGGAGCCGCTCTACCCCATCCATAAGGCCTTGAGGGAACATGCAG GGAAGTACACGGAGAAACTCGGTAAACGCGTAAATACTGCCCAAGTGTCC ATTAATTGGGTGCGAGCCCAGGGGGTGATTCCGCTCGTAGGGGTCAAAAC TGCGGCGCAAGCCAAGGACATGGTGGAAGCCGCGAAATGGGATTTGGAGC CTGAGGATGTGAAGGAGTTAAGTCAGGTGGCGTTAGATACGTACAAGAAA CGGAGGAAGATCACTGAGATGCTGGCCAAGGCGCGTCGATAG back to top
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