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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:353956..355512 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G01120.1 vs.
Match: EWM25901.1 (homoaconitate hydratase family protein [Nannochloropsis gaditana]) HSP 1 Score: 929.1 bits (2400), Expect = 6.000e-267 Identity = 465/523 (88.91%), Postives = 488/523 (93.31%), Query Frame = 0
Query: 1 MAPATPAVALLGATLAFANAFVPPTPTVTSSSRFGSI----RMMAGSVDGAAASKAPPMTLTEKILARAAGKESVAPNDNVWVQADNLLTHDVCGPGTFGLFKKEFGPRAKVWDKERVIIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVAMAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKFDLNGEIPDYLLAKDIILQVIGDIGVAGATYRAMEFGGDAIGQLSMEERQTLCNMAIEAGGKNGIIPADAVTQEYVDARNAGNRPYTIFQADPDAKYHSKYAYDLSSLEPVVAKPHSPDNRALAKDCRDIKIDRVYIGSCTGGKTEDFVAAARILQGNKVSVPTFLVPATRRVYDDLYSLTIGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEFSNTRHPAETLAS-APAKNSVFAKK 519
MAPA V +LGATLA NAFVPP P+ +S RF + R+ A DG A++KAPPMTLTEKILARAAGKESVAPNDNVWV+ADNL+THDVCGPGTFGLFKKEFG AKVWD+ERV+IIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVA+AQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKF+LNGEIPDYLLAKD+ILQ+IGDIGVAGATYRAMEFGG+AI QLSMEERQTLCNMAIEAGGKNGIIPAD VT YVDARNAG+RPYTIF+ADPDA Y +KYAYDLSSLEPVVAKPHSPDNRALA++CRDIKIDRVYIGSCTGGKTEDFVAAARILQ NKVSVPTFLVPATRRVYDDLYSLT+GGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEFS TR PAETLA+ APA SVFAKK
Sbjct: 1 MAPAAQIVTMLGATLALCNAFVPPVPS--TSPRFSKLAAPRRLAAAGADG-ASTKAPPMTLTEKILARAAGKESVAPNDNVWVRADNLMTHDVCGPGTFGLFKKEFGANAKVWDRERVLIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKFELNGEIPDYLLAKDMILQIIGDIGVAGATYRAMEFGGNAIRQLSMEERQTLCNMAIEAGGKNGIIPADEVTTAYVDARNAGSRPYTIFEADPDASYFAKYAYDLSSLEPVVAKPHSPDNRALARECRDIKIDRVYIGSCTGGKTEDFVAAARILQQNKVSVPTFLVPATRRVYDDLYSLTLGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLCVSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEFSQTRQPAETLATKAPA--SVFAKK 518
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G01120.1 ID=NO12G01120.1|Name=NO12G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp ATGGCACCAGCCACACCCGCTGTCGCCTTGCTGGGCGCCACGCTGGCGTT TGCAAATGCTTTCGTCCCCCCTACCCCCACCGTCACCTCCTCCTCCCGCT TCGGCAGCATTCGCATGATGGCTGGGAGTGTTGACGGCGCCGCTGCCTCC AAAGCCCCTCCAATGACCTTGACGGAAAAAATCCTGGCCCGAGCCGCGGG GAAGGAGAGTGTTGCTCCCAACGATAATGTGTGGGTGCAAGCTGATAACC TGCTGACTCACGACGTGTGCGGACCAGGAACGTTTGGATTGTTCAAGAAG GAGTTTGGCCCGCGTGCTAAGGTGTGGGACAAGGAACGAGTGATCATCAT TCCGGACCACTACATCTTTACGTCCGACCCACGGGCGAATCGCAACGTGG ACATCCTGCGTGATTTCGTACAGGAGCAAAATATCAAGTATTTTTACGAT ATCACCGACCGAGGTGAATTCAAAGCAAACCCCGATTACAAGGGTGTGTG CCACGTAGCCATGGCTCAGGAGGGACACACGCGACCGGGGGAGGTGTTGT TTGGCACGGACTCGCACACGTGCAATGCAGGGGCCTTTGGTCAGTTTGCA ACTGGAATCGGGAACACCGACGCAGCTTTTGTGTTGGGGACGGGCAAGCT TTTGTTGAAGGTCCCGGCGTCGATGAAATTTGATTTGAATGGCGAGATCC CTGATTATCTGCTGGCGAAAGACATCATCCTGCAGGTCATCGGTGACATT GGTGTGGCGGGTGCAACATATCGTGCCATGGAGTTTGGGGGAGACGCCAT CGGCCAACTTTCAATGGAGGAACGTCAGACGTTGTGTAATATGGCCATTG AAGCCGGCGGGAAGAATGGTATTATCCCTGCGGATGCGGTTACCCAGGAG TATGTGGACGCTCGCAATGCTGGGAACAGGCCTTATACGATTTTCCAGGC GGACCCCGACGCGAAGTACCATTCGAAGTATGCTTATGATTTGAGCAGCC TGGAGCCGGTGGTTGCCAAGCCGCACTCGCCTGATAACCGGGCGTTGGCG AAGGATTGTAGGGACATCAAGATTGACCGTGTTTACATTGGGTCTTGCAC GGGGGGGAAGACGGAGGATTTTGTGGCGGCGGCGCGGATTTTGCAAGGCA ATAAGGTGTCGGTCCCGACATTTTTGGTGCCGGCCACGAGGAGAGTGTAT GATGATTTGTACTCCTTGACGATCGGAGGGAGGACCCTCGCGCAGATCTT TAGAGACGCTGGATGCATTGACCCGGCCTCGCCGAGCTGCGCGGCGTGCT TGGGGGGACCGGCGGATACGTTCGCGAGGATGAATGAACCCTTGTTGTGC GTGAGTACTACCAACAGGAATTTCCCCGGCCGCATGGGCCACAAGGACGC AGGGATCTTCCTTGCCTCTCCTTACACTGCTGCTGCTTCAGCCGTGACTG GGTATGTAACGGACCCGCGGGAGGTGTTTGAATTTTCAAATACGAGGCAC CCGGCCGAGACGTTGGCCTCCGCCCCGGCGAAGAATAGCGTGTTTGCCAA GAAGTAA back to topprotein sequence of NO12G01120.1 >NO12G01120.1-protein ID=NO12G01120.1-protein|Name=NO12G01120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp MAPATPAVALLGATLAFANAFVPPTPTVTSSSRFGSIRMMAGSVDGAAAS KAPPMTLTEKILARAAGKESVAPNDNVWVQADNLLTHDVCGPGTFGLFKK EFGPRAKVWDKERVIIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYD ITDRGEFKANPDYKGVCHVAMAQEGHTRPGEVLFGTDSHTCNAGAFGQFA TGIGNTDAAFVLGTGKLLLKVPASMKFDLNGEIPDYLLAKDIILQVIGDI GVAGATYRAMEFGGDAIGQLSMEERQTLCNMAIEAGGKNGIIPADAVTQE YVDARNAGNRPYTIFQADPDAKYHSKYAYDLSSLEPVVAKPHSPDNRALA KDCRDIKIDRVYIGSCTGGKTEDFVAAARILQGNKVSVPTFLVPATRRVY DDLYSLTIGGRTLAQIFRDAGCIDPASPSCAACLGGPADTFARMNEPLLC VSTTNRNFPGRMGHKDAGIFLASPYTAAASAVTGYVTDPREVFEFSNTRH PAETLASAPAKNSVFAKK* back to topmRNA from alignment at chr12:353956..355512+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G01120.1 ID=NO12G01120.1|Name=NO12G01120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp|location=Sequence derived from alignment at chr12:353956..355512+ (Nannochloropsis oceanica) ATGGCACCAGCCACACCCGCTGTCGCCTTGCTGGGCGCCACGCTGGCGTT
TGCAAATGCTTTCGTCCCCCCTACCCCCACCGTCACCTCCTCCTCCCGCT
TCGGCAGCATTCGCATGATGGCTGGGAGTGTTGACGGCGCCGCTGCCTCC
AAAGCCCCTCCAATGACCTTGACGGAAAAAATCCTGGCCCGAGCCGCGGG
GAAGGAGAGTGTTGCTCCCAACGATAATGTGTGGGTGCAAGCTGATAACC
TGCTGACTCACGACGTGTGCGGACCAGGAACGTTTGGATTGTTCAAGAAG
GAGTTTGGCCCGCGTGCTAAGGTGTGGGACAAGGAACGAGTGATCATCAT
TCCGGACCACTACATCTTTACGTCCGACCCACGGGCGAATCGCAACGTGG
ACATCCTGCGTGATTTCGTACAGGAGCAAAATATCAAGTATTTTTACGAT
ATCACCGACCGAGGTGAATTCAAAGCAAACCCCGATTACAAGGGTGTGTG
CCACGTAGCCATGGCTCAGGAGGGACACACGCGACCGGGGGAGGTGTTGT
TTGGCACGGACTCGCACACGTGCAATGCAGGGGCCTTTGGTCAGTTTGCA
ACTGGAATCGGGAACACCGACGCAGCTTTTGTGTTGGGGACGGGCAAGCT
TTTGTTGAAGGTCCCGGCGTCGATGAAATTTGATTTGAATGGCGAGATCC
CTGATTATCTGCTGGCGAAAGACATCATCCTGCAGGTCATCGGTGACATT
GGTGTGGCGGGTGCAACATATCGTGCCATGGAGTTTGGGGGAGACGCCAT
CGGCCAACTTTCAATGGAGGAACGTCAGACGTTGTGTAATATGGCCATTG
AAGCCGGCGGGAAGAATGGTATTATCCCTGCGGATGCGGTTACCCAGGAG
TATGTGGACGCTCGCAATGCTGGGAACAGGCCTTATACGATTTTCCAGGC
GGACCCCGACGCGAAGTACCATTCGAAGTATGCTTATGATTTGAGCAGCC
TGGAGCCGGTGGTTGCCAAGCCGCACTCGCCTGATAACCGGGCGTTGGCG
AAGGATTGTAGGGACATCAAGATTGACCGTGTTTACATTGGGTCTTGCAC
GGGGGGGAAGACGGAGGATTTTGTGGCGGCGGCGCGGATTTTGCAAGGCA
ATAAGGTGTCGGTCCCGACATTTTTGGTGCCGGCCACGAGGAGAGTGTAT
GATGATTTGTACTCCTTGACGATCGGAGGGAGGACCCTCGCGCAGATCTT
TAGAGACGCTGGATGCATTGACCCGGCCTCGCCGAGCTGCGCGGCGTGCT
TGGGGGGACCGGCGGATACGTTCGCGAGGATGAATGAACCCTTGTTGTGC
GTGAGTACTACCAACAGGAATTTCCCCGGCCGCATGGGCCACAAGGACGC
AGGGATCTTCCTTGCCTCTCCTTACACTGCTGCTGCTTCAGCCGTGACTG
GGTATGTAACGGACCCGCGGGAGGTGTTTGAATTTTCAAATACGAGGCAC
CCGGCCGAGACGTTGGCCTCCGCCCCGGCGAAGAATAGCGTGTTTGCCAA
GAAGTAA back to topCoding sequence (CDS) from alignment at chr12:353956..355512+ >NO12G01120.1 ID=NO12G01120.1|Name=NO12G01120.1|organism=Nannochloropsis oceanica|type=CDS|length=1557bp|location=Sequence derived from alignment at chr12:353956..355512+ (Nannochloropsis oceanica) ATGGCACCAGCCACACCCGCTGTCGCCTTGCTGGGCGCCACGCTGGCGTT TGCAAATGCTTTCGTCCCCCCTACCCCCACCGTCACCTCCTCCTCCCGCT TCGGCAGCATTCGCATGATGGCTGGGAGTGTTGACGGCGCCGCTGCCTCC AAAGCCCCTCCAATGACCTTGACGGAAAAAATCCTGGCCCGAGCCGCGGG GAAGGAGAGTGTTGCTCCCAACGATAATGTGTGGGTGCAAGCTGATAACC TGCTGACTCACGACGTGTGCGGACCAGGAACGTTTGGATTGTTCAAGAAG GAGTTTGGCCCGCGTGCTAAGGTGTGGGACAAGGAACGAGTGATCATCAT TCCGGACCACTACATCTTTACGTCCGACCCACGGGCGAATCGCAACGTGG ACATCCTGCGTGATTTCGTACAGGAGCAAAATATCAAGTATTTTTACGAT ATCACCGACCGAGGTGAATTCAAAGCAAACCCCGATTACAAGGGTGTGTG CCACGTAGCCATGGCTCAGGAGGGACACACGCGACCGGGGGAGGTGTTGT TTGGCACGGACTCGCACACGTGCAATGCAGGGGCCTTTGGTCAGTTTGCA ACTGGAATCGGGAACACCGACGCAGCTTTTGTGTTGGGGACGGGCAAGCT TTTGTTGAAGGTCCCGGCGTCGATGAAATTTGATTTGAATGGCGAGATCC CTGATTATCTGCTGGCGAAAGACATCATCCTGCAGGTCATCGGTGACATT GGTGTGGCGGGTGCAACATATCGTGCCATGGAGTTTGGGGGAGACGCCAT CGGCCAACTTTCAATGGAGGAACGTCAGACGTTGTGTAATATGGCCATTG AAGCCGGCGGGAAGAATGGTATTATCCCTGCGGATGCGGTTACCCAGGAG TATGTGGACGCTCGCAATGCTGGGAACAGGCCTTATACGATTTTCCAGGC GGACCCCGACGCGAAGTACCATTCGAAGTATGCTTATGATTTGAGCAGCC TGGAGCCGGTGGTTGCCAAGCCGCACTCGCCTGATAACCGGGCGTTGGCG AAGGATTGTAGGGACATCAAGATTGACCGTGTTTACATTGGGTCTTGCAC GGGGGGGAAGACGGAGGATTTTGTGGCGGCGGCGCGGATTTTGCAAGGCA ATAAGGTGTCGGTCCCGACATTTTTGGTGCCGGCCACGAGGAGAGTGTAT GATGATTTGTACTCCTTGACGATCGGAGGGAGGACCCTCGCGCAGATCTT TAGAGACGCTGGATGCATTGACCCGGCCTCGCCGAGCTGCGCGGCGTGCT TGGGGGGACCGGCGGATACGTTCGCGAGGATGAATGAACCCTTGTTGTGC GTGAGTACTACCAACAGGAATTTCCCCGGCCGCATGGGCCACAAGGACGC AGGGATCTTCCTTGCCTCTCCTTACACTGCTGCTGCTTCAGCCGTGACTG GGTATGTAACGGACCCGCGGGAGGTGTTTGAATTTTCAAATACGAGGCAC CCGGCCGAGACGTTGGCCTCCGCCCCGGCGAAGAATAGCGTGTTTGCCAA GAAGTAA back to top
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