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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr12 | genome | chr12:270874..274684 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO12G00820.1 vs.
Match: EWM25941.1 (hypothetical protein Naga_100469g5 [Nannochloropsis gaditana]) HSP 1 Score: 807.0 bits (2083), Expect = 3.700e-230 Identity = 397/567 (70.02%), Postives = 450/567 (79.37%), Query Frame = 0
Query: 1 MRRTLRVCLALLSSLSVISQSHGQKLRRQTNADALQGMEELTLDDGYDAISEVEIDSEGGAFIAAPTYGVENERVIPASAASTAAAAAAEVAVAAAPVAITNAVVLIPPGEDQDKREAIEWDVDTNDTPRGITWPHCYFHAKYAMNYTAFGLIDPNAVYWGQLVRGSGANVAYKFKGKFPKSIYFSYQVYASQQSAEPDQKITDMNVKPLWGQNPFSNGSITPDETGGYEVYFTPSGQEGYTNELRLPSNPVNQLILRMYKVDPSLPPSTSIIDLEPPTMYMAHDMGEGKREWRALPRCSAHEEKLLADLSNIFYEIQYPRSSGTEGYGVIPVLRDMNCPMNPSKGNVSFVLFQGDWLDPSLAIARQSIDSPYMMYCINPYNDWTYYLNTLLKVRFKLPTLANALFSDIKVANVGEYEVRYVSMSTADGFFPTIASIDGKGMERFYN----RNSSWDGWVEIRVALNEQKARDCGFWSDDAIFLPLESAQVHPAKSIVMFYRSILAKGPKSAGAASKACGSGALCGNPPFLRSIMQDQYPELEVYHCDECAGKAPVVTRYADYFQGH 564
MRRTLR + LL S+ S QKL R T+AD+ + + ++ D + +V +D +G AF +PT G A A A + +P A + P + DKR AIEWDVDTN+ RG +WPHCY+HAKYA+NYT FGLIDPNAVYWGQLVRGSGANVAYK KG+FPKSIYFS+QVYASQ SA PDQKITD +VKPLWG NPFSN TP++ GGYEVY TPSG+EGY NELRLP+ +NQLILRMYK DP L PS SIIDLEPPT+YMAHDMGEGKREWRALPRCSA +EKLLADLSN +YEIQYP ++GTEG GVIP+LR+MNCPMNP+KGNVSFVLFQGDWL P LAIARQS DSPYMMYCINPYNDW +YLNTLLK+RFKLP +A+ LFS I+VANVG+YEVRY+SMSTADGF+PTIASIDG+GM+RFYN NSSWDGWVEIRVALNE KAR C FWSD AIFLPLE VHPAKSIV+F RSILA GPKSAGAASKACG+ ALCGNPPF+RSIMQ+QYPELEVYHCD C GK P+VTRY DYF+ H
Sbjct: 1 MRRTLRAMVGLLCFTSISSLGQSQKLLRSTDADSSEDQDTNSMRDSTNTKDQVIVDLDG-AF--SPTRG--------ADRAEGRAKTPKIRSTVGSPDRPPVAALQFPTVDQDDKRAAIEWDVDTNEVARGYSWPHCYWHAKYAINYTHFGLIDPNAVYWGQLVRGSGANVAYKMKGRFPKSIYFSWQVYASQTSAAPDQKITDFHVKPLWGTNPFSNPDATPEDMGGYEVYLTPSGEEGYVNELRLPNATINQLILRMYKPDPILGPSISIIDLEPPTLYMAHDMGEGKREWRALPRCSAAKEKLLADLSNAWYEIQYPHATGTEGRGVIPILREMNCPMNPTKGNVSFVLFQGDWLPPELAIARQSQDSPYMMYCINPYNDWRHYLNTLLKIRFKLPVIADGLFSGIRVANVGDYEVRYLSMSTADGFYPTIASIDGRGMQRFYNYSSAGNSSWDGWVEIRVALNEAKARACNFWSDQAIFLPLEVEDVHPAKSIVLFLRSILAHGPKSAGAASKACGNSALCGNPPFIRSIMQEQYPELEVYHCDSCEGKPPLVTRYEDYFKNH 556
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO12G00820.1 ID=NO12G00820.1|Name=NO12G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=2363bp GAGCGATGTCGACCTATGTGTTCCTTCCCCTCTCTTTACACCCACGCGAT GAGTCCAGGCGCACGAGTCGCAAGAAAGAAACGATTGTGTTCAGCAGAGA ATGATGTTGATCCTTTGGCGCACCGCATCTATTTATATGTGCCTCGCTCC ATGGAAAATACCTATTACGCGGTTGTCGATTGTCGGCAGAAAGAGATGGA AGTCCTCCCCATCTTGCCACCACATCCCAGACATTCTCCCCTCCTCCCAT AGCGCGCCTATTCATCAAATCCCTATATATTTTGACTACCTTTCTCCATA CACAGCAATCGTCAATCGTTCTCACGCTCCATGTCTTCTTTGTCTATTCT ACCCTAGAACACTAGGGCCAGTTTCCTTGTGTCAGGAAACGGGGAAGGAT GCGGAGGACTCTCAGAGTTTGCTTGGCGCTGCTTTCCTCTCTTAGTGTAA TCTCCCAAAGCCATGGCCAGAAGCTTCGGCGACAGACCAACGCCGACGCC CTTCAGGGGATGGAAGAACTCACTTTGGACGACGGGTACGATGCGATAAG TGAAGTAGAAATTGACTCGGAAGGCGGGGCATTCATTGCCGCACCCACAT ATGGGGTCGAGAATGAGAGGGTAATACCGGCTTCTGCTGCTTCTACTGCT GCTGCTGCTGCTGCTGAAGTTGCTGTTGCTGCTGCACCAGTTGCTATTAC TAATGCCGTGGTTTTGATACCGCCAGGGGAGGATCAGGATAAGCGCGAGG CGATTGAGTGGGACGTGGATACGAATGACACCCCCAGAGGCATCACTTGG CCACACTGCTACTTTCATGCCAAATACGCGATGAACTACACCGCTTTTGG CCTCATCGACCCCAACGCCGTCTACTGGGGCCAGCTCGTTAGGGGCTCCG GTGCTAACGTGGCCTATAAATTCAAGGGCAAGTTCCCCAAGTCCATCTAC TTTTCATATCAAGTCTATGCGTCGCAGCAGTCCGCAGAGCCGGACCAGAA GATCACAGACATGAATGTGAAGCCACTGTGGGGGCAAAACCCTTTTTCGA ACGGCAGCATTACGCCGGATGAGACTGGAGGCTACGAAGTTTACTTCACC CCCAGCGGCCAGGAGGGGTATACGAACGAGCTCCGCCTTCCGAGCAACCC AGTCAACCAGCTCATTCTCCGCATGTACAAGGTAGATCCCTCCCTCCCTC CTTCGACCTCGATCATTGACCTTGAACCTCCGACGATGTACATGGCCCAT GACATGGGCGAGGGGAAAAGGGAGTGGAGGGCCTTGCCGCGGTGCTCCGC TCATGAGGAGAAATTGCTGGCAGACTTAAGCAATATTTTCTATGAGATCC AATACCCGCGGTCCAGCGGGACGGAGGGGTACGGGGTGATTCCGGTTCTC CGCGACATGAACTGCCCGATGAACCCCTCGAAAGGGAACGTCTCCTTCGT CCTCTTCCAAGGTGACTGGCTTGACCCCAGCCTGGCCATCGCACGTCAGT CCATCGACTCCCCCTACATGATGTACTGCATCAACCCGTACAACGACTGG ACTTATTACCTGAACACGCTCTTGAAGGTCCGCTTCAAGCTTCCCACCCT CGCGAATGCCCTCTTCTCGGACATCAAAGTCGCCAACGTCGGCGAATACG AAGTCCGTTACGTCTCCATGTCAACGGCTGACGGTTTTTTCCCCACCATA GCCTCCATCGATGGCAAGGGTATGGAACGCTTCTATAACCGCAACTCCTC CTGGGACGGGTGGGTCGAGATCCGGGTAGCCCTCAACGAACAAAAGGCTC GGGATTGTGGCTTTTGGAGCGACGACGCCATATTTCTCCCGTTGGAATCT GCGCAGGTGCACCCTGCCAAGAGCATTGTGATGTTTTACAGGTCCATCCT GGCCAAGGGCCCCAAAAGCGCAGGGGCAGCGTCCAAGGCCTGTGGAAGCG GTGCCTTGTGCGGGAATCCGCCGTTTCTACGGTCCATAATGCAGGATCAA TACCCCGAGCTGGAGGTCTACCATTGCGATGAATGTGCGGGCAAAGCGCC GGTGGTCACGAGATATGCTGACTATTTCCAGGGCCATTAGAGGAGGTGAG AGGATGAGAGAAAGGGAAAGAGGGGGAGGAAGAGAGAGAGGAGAAGAGAG AGAGAGAAGAAAAGAGTGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGGGAGGAGAAAAGTACGATTGTCCGGGCGATGTGGGACCGAC TAGGTTGTATGCTGTAAATTCACTATCACACACCCACCCGTAGTTGAAAG AGAAGGTAAGAATTACTGGTCCGAGGAGGAGCAATGAAACGAAATTTAAA ATTTTAAGGAAAG back to topprotein sequence of NO12G00820.1 >NO12G00820.1-protein ID=NO12G00820.1-protein|Name=NO12G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=564bp MRRTLRVCLALLSSLSVISQSHGQKLRRQTNADALQGMEELTLDDGYDAI SEVEIDSEGGAFIAAPTYGVENERVIPASAASTAAAAAAEVAVAAAPVAI TNAVVLIPPGEDQDKREAIEWDVDTNDTPRGITWPHCYFHAKYAMNYTAF GLIDPNAVYWGQLVRGSGANVAYKFKGKFPKSIYFSYQVYASQQSAEPDQ KITDMNVKPLWGQNPFSNGSITPDETGGYEVYFTPSGQEGYTNELRLPSN PVNQLILRMYKVDPSLPPSTSIIDLEPPTMYMAHDMGEGKREWRALPRCS AHEEKLLADLSNIFYEIQYPRSSGTEGYGVIPVLRDMNCPMNPSKGNVSF VLFQGDWLDPSLAIARQSIDSPYMMYCINPYNDWTYYLNTLLKVRFKLPT LANALFSDIKVANVGEYEVRYVSMSTADGFFPTIASIDGKGMERFYNRNS SWDGWVEIRVALNEQKARDCGFWSDDAIFLPLESAQVHPAKSIVMFYRSI LAKGPKSAGAASKACGSGALCGNPPFLRSIMQDQYPELEVYHCDECAGKA PVVTRYADYFQGH* back to topmRNA from alignment at chr12:270874..274684- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO12G00820.1 ID=NO12G00820.1|Name=NO12G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=3811bp|location=Sequence derived from alignment at chr12:270874..274684- (Nannochloropsis oceanica) GAGCGATGTCGACCTATGTGTTCCTTCCCCTCTCTTTACACCCACGCGAT
GAGTCCAGGCGCACGAGTCGCAAGAAAGAAACGATTGTGTTCAGCAGAGA
ATGATGTTGATCCTTTGGCGCACCGCATCTATTTATATGTGCCTCGCTCC
ATGGAAAATACCTATTACGCGGTTGTCGATTGTCGGCAGAAAGAGATGGA
AGTCCTCCCCATCTTGCCACCACATCCCAGACATTCTCCCCTCCTCCCAT
AGCGCGCCTATTCATCAAATCCCTATATATTTTGACTACCTTTCTCCATA
CACAGCAATCGTCAATCGTTCTCACGCTCCATGTCTTCTTTGTCTATTCT
ACCCTAGAACACTAGGGCCAGTTTCCTTGTGTCAGGAAACGGGGAAGGAT
GCGGAGGACTCTCAGAGTTTGCTTGGCGCTGCTTTCCTCTCTTAGGTAAG
GAAAAGAAATGCACAACGTCTTGCGCCAAGCGATACATCCAGTACACAGT
GTGGGTCTTGGGCAGGGGCTAGTGGTCAGAGTTAGCAAGAAAGCATGGGG
AAGGCGGGTGGGCTAGCCTAGTCTAATATCCTCCATCCCTTCCCTTATCA
AGACGCCTTCCTTGACATTCGGCCTCGTTCTCTTTACTTATTTTCTCCCG
CCTCCCTCCCACCCCTTCTCAATCTTCCTTAAGTGTAATGTCTCTTCTTC
ATCTCATCACCATCCTTCCCCCAATCCCCCTCCATCTTCCTACAGTGTAA
TCTCCCAAAGCCATGGCCAGAAGCTTCGGCGACAGACCAACGCCGACGCC
CTTCAGGGGATGGAAGAACTCACTTTGGACGACGGGTACGATGCGATAAG
TGAAGTAGAAATTGACTCGGAAGGCGGGGCATTCATTGCCGCACCCACAT
ATGGGGTCGAGAATGAGAGGGTAATACCGGCTTCTGCTGCTTCTACTGCT
GCTGCTGCTGCTGCTGAAGTTGCTGTTGCTGCTGCACCAGTTGCTATTAC
TAATGCCGTGGTTTTGATACCGCCAGGGGAGGATCAGGATAAGCGCGAGG
CGATTGAGTGGGACGTGGATACGAATGACACCCCCAGAGGCATCACTTGG
CCACACTGCTACTTTCATGCCAAATACGCGGTACGTCCCTCTCTCTCTTC
CTCTCTCCTACTCTTCCTCCCCTCCTTATTTCTCTTCGCTCACGCGCCCT
CCCTTCCGCCTTCAGATGAACTACACCGCTTTTGGCCTCATCGACCCCAA
CGCCGTCTACTGGGGCCAGCTCGTTAGGGGCTCCGGTGCTAACGTGGCCT
ATAAATTCAAGGGCAAGTTCCCCAAGTCCATCTACTTTTCATATCAAGTC
TATGCGTCGCAGCAGTCCGCAGAGCCGGACCAGAAGATCACAGACATGAA
TGTGCGTACTACCGCATCCCTTGGGCCTTCGTTCTTTCCCTCCCTCCCTC
CCTCCTCTTTCCCCACTCTCCTTTATTGTCTGCGCCCTTAGACCTTGATA
ATACCCTTCGAGTCACCTCCCTCTCCTTTTCTCATACTCCTTCTCACTCT
CTCCCTATTGGTTGGCAGGTGAAGCCACTGTGGGGGCAAAACCCTTTTTC
GAACGGCAGCATTACGCCGGATGAGACTGGAGGTGAGCAGGGAGAGAGGG
AGGGAGGGAGGAAGGGAGGGAAAAACAAATACCGAATGACACTTCTTTCC
TTCTCTTCTTCCCCTCCATCCATCCCTTCATCCTTTCTCCCTTTCCCCCC
CTCCTCCCAGGCTACGAAGTTTACTTCACCCCCAGCGGCCAGGAGGGGTA
TACGAACGAGCTCCGCCTTCCGAGCAACCCAGTCAACCAGCTCATTCTCC
GCATGTACAAGGTAGATCCCTCCCTCCCTCCTTCGACCTCGATCATTGAC
CTTGAACCTCCGACGATGTACATGGCCCATGACATGGGCGAGGGGAAAAG
GGAGTGGAGGGCCTTGCCGCGGTGCTCCGCTCATGAGGAGAAATTGCTGG
CAGACTTAAGCAATATTTTCTATGAGATCCAATACCCGCGGTCCAGCGGG
ACGGAGGGGTACGGGGTGATTCCGGTGAGTGTCTGCTATTTTCTAATATA
TTTTAAATTATTTTTGATTATTTTTTAATTTATTCATATTATATACATAT
TTAGATATATATATATATATTTATGTGTGTGTATATTATTTATATGTATA
CAAATGTGTGTACGTTGTATTATATTCATTTACTCGGTCTTTTTTGAAAT
GCATACCTGTTGATATATCTATTCATCAATCCGTTTTTGGAAATACATGC
ATTAAATCTTTTATTTTTCAATATTTATTTTTCAATATTTATTGATTCAT
TCATTTTCCCTCGCAGGTTCTCCGCGACATGAACTGCCCGATGAACCCCT
CGAAAGGGAACGTCTCCTTCGTCCTCTTCCAAGGTGACTGGCTTGACCCC
AGCCTGGCCATCGCACGTCAGTCCATCGACTCCCCCTACATGATGTACTG
CATCAACCCGTACAACGACTGGACTTATTACCTGAACACGCTCTTGAAGG
TGCTTCCCTCCCTCCTTTCCCCCCTCCCTCTCTTTTCCCCCTTTTCCGCT
TCCATATTTGTGCCAGGTCCGAATTAAAGTTTTCTGCCTCGTCGGCGGCT
TTTACTTAGTCCTTAGATCCCGCACCCGATGTATCAATCAAGTAAACCAT
GAATAAATTCGACACCCTCCCCCATCTGCCCCTCATTCATTCCCCCCCCT
TCCCTCTCTCCCTCCCTTCTTGCCCTAGGTCCGCTTCAAGCTTCCCACCC
TCGCGAATGCCCTCTTCTCGGACATCAAAGTCGCCAACGTCGGCGAATAC
GAAGTCCGTTACGTCTCCATGTCAACGGCTGACGGTTTTTTCCCCACCAT
AGCCTCCATCGATGGCAAGGGTATGGAACGCTTCTATAACCGCAACTCCT
CCTGGGACGGGTGGGTCGAGATCCGGGTAGCCCTCAACGAACAAAAGGCT
CGGGATTGTGGCTTTTGGAGCGACGACGCCATATTTCTCCCGTTGGAATC
TGCGCAGGTGCACCCTGCCAAGAGCATTGTGATGTTTTACAGGTCCATCC
TGGCCAAGGGCCCCAAAAGCGCAGGGGCAGCGTCCAAGGCCTGTGGAAGC
GGTGCCTTGTGCGGGAATCCGCCGTTTCTACGGTCCATAATGCAGGATCA
ATACCCCGGTAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGT
AGGTAGGTAGGTAGGCAGGTAGGGAGGTAGGGAGGAAGGGAGGGAGGAGG
GAAGGAGGAGGAAAGTAAACTTCCATACATATAAGACAGGAAAATGGCAG
GGAAGCCCACATTGGATATCTTATTGCTCACGTCTTTTCTCCCTTCTTCC
TTCCTTCCTCTTCTCGTCCCTCCCATGTCATTGTCTTCCCGCCTCATCAC
AACAGAGCTGGAGGTCTACCATTGCGATGAATGTGCGGGCAAAGCGCCGG
TGGTCACGAGATATGCTGACTATTTCCAGGGCCATTAGAGGAGGTGAGAG
GATGAGAGAAAGGGAAAGAGGGGGAGGAAGAGAGAGAGGAGAAGAGAGAG
AGAGAAGAAAAGAGTGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGGGAGGAGAAAAGTACGATTGTCCGGGCGATGTGGGACCGACTA
GGTTGTATGCTGTAAATTCACTATCACACACCCACCCGTAGTTGAAAGAG
AAGGTAAGAATTACTGGTCCGAGGAGGAGCAATGAAACGAAATTTAAAAT
TTTAAGGAAAG back to topCoding sequence (CDS) from alignment at chr12:270874..274684- >NO12G00820.1 ID=NO12G00820.1|Name=NO12G00820.1|organism=Nannochloropsis oceanica|type=CDS|length=1692bp|location=Sequence derived from alignment at chr12:270874..274684- (Nannochloropsis oceanica) ATGCGGAGGACTCTCAGAGTTTGCTTGGCGCTGCTTTCCTCTCTTAGTGT AATCTCCCAAAGCCATGGCCAGAAGCTTCGGCGACAGACCAACGCCGACG CCCTTCAGGGGATGGAAGAACTCACTTTGGACGACGGGTACGATGCGATA AGTGAAGTAGAAATTGACTCGGAAGGCGGGGCATTCATTGCCGCACCCAC ATATGGGGTCGAGAATGAGAGGGTAATACCGGCTTCTGCTGCTTCTACTG CTGCTGCTGCTGCTGCTGAAGTTGCTGTTGCTGCTGCACCAGTTGCTATT ACTAATGCCGTGGTTTTGATACCGCCAGGGGAGGATCAGGATAAGCGCGA GGCGATTGAGTGGGACGTGGATACGAATGACACCCCCAGAGGCATCACTT GGCCACACTGCTACTTTCATGCCAAATACGCGATGAACTACACCGCTTTT GGCCTCATCGACCCCAACGCCGTCTACTGGGGCCAGCTCGTTAGGGGCTC CGGTGCTAACGTGGCCTATAAATTCAAGGGCAAGTTCCCCAAGTCCATCT ACTTTTCATATCAAGTCTATGCGTCGCAGCAGTCCGCAGAGCCGGACCAG AAGATCACAGACATGAATGTGAAGCCACTGTGGGGGCAAAACCCTTTTTC GAACGGCAGCATTACGCCGGATGAGACTGGAGGCTACGAAGTTTACTTCA CCCCCAGCGGCCAGGAGGGGTATACGAACGAGCTCCGCCTTCCGAGCAAC CCAGTCAACCAGCTCATTCTCCGCATGTACAAGGTAGATCCCTCCCTCCC TCCTTCGACCTCGATCATTGACCTTGAACCTCCGACGATGTACATGGCCC ATGACATGGGCGAGGGGAAAAGGGAGTGGAGGGCCTTGCCGCGGTGCTCC GCTCATGAGGAGAAATTGCTGGCAGACTTAAGCAATATTTTCTATGAGAT CCAATACCCGCGGTCCAGCGGGACGGAGGGGTACGGGGTGATTCCGGTTC TCCGCGACATGAACTGCCCGATGAACCCCTCGAAAGGGAACGTCTCCTTC GTCCTCTTCCAAGGTGACTGGCTTGACCCCAGCCTGGCCATCGCACGTCA GTCCATCGACTCCCCCTACATGATGTACTGCATCAACCCGTACAACGACT GGACTTATTACCTGAACACGCTCTTGAAGGTCCGCTTCAAGCTTCCCACC CTCGCGAATGCCCTCTTCTCGGACATCAAAGTCGCCAACGTCGGCGAATA CGAAGTCCGTTACGTCTCCATGTCAACGGCTGACGGTTTTTTCCCCACCA TAGCCTCCATCGATGGCAAGGGTATGGAACGCTTCTATAACCGCAACTCC TCCTGGGACGGGTGGGTCGAGATCCGGGTAGCCCTCAACGAACAAAAGGC TCGGGATTGTGGCTTTTGGAGCGACGACGCCATATTTCTCCCGTTGGAAT CTGCGCAGGTGCACCCTGCCAAGAGCATTGTGATGTTTTACAGGTCCATC CTGGCCAAGGGCCCCAAAAGCGCAGGGGCAGCGTCCAAGGCCTGTGGAAG CGGTGCCTTGTGCGGGAATCCGCCGTTTCTACGGTCCATAATGCAGGATC AATACCCCGAGCTGGAGGTCTACCATTGCGATGAATGTGCGGGCAAAGCG CCGGTGGTCACGAGATATGCTGACTATTTCCAGGGCCATTAG back to top
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