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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:1122342..1125630 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G03490.1 vs.
Match: EWM29163.1 (ubiquitin conjugating enzyme [Nannochloropsis gaditana]) HSP 1 Score: 306.2 bits (783), Expect = 1.000e-79 Identity = 137/147 (93.20%), Postives = 144/147 (97.96%), Query Frame = 0
Query: 131 MALKRINKELQDLGRDPPANCSAGPVGDDLFHWQATIMGPDDSPYSGAVFFLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAQLYRTDRGRHDATAREWTAKYAM 278
MALKR+NKELQD+ RDPPANCSAGPVGDDLFHWQATIMGP+DSPY+G V++LNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALT+SKVLLSICSLLTDPNPDDPLVPEIAQLYRTDR RHDATAREWTAKYAM
Sbjct: 1 MALKRVNKELQDISRDPPANCSAGPVGDDLFHWQATIMGPEDSPYAGGVYYLNIHFPADYPFKPPKVNFTTRIYHCNINANGGICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAQLYRTDRSRHDATAREWTAKYAM 147
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G03490.1 ID=NO11G03490.1|Name=NO11G03490.1|organism=Nannochloropsis oceanica|type=mRNA|length=2140bp AGTCATCACATGGGCCTCCGGACAAAGTTAATTTCGAGTTCTCTGGCCCT CAGGGAGGGTCAAGGAAAAGAGTCCTTCGCCCCCCCTTTCCCTAATGACG GTGATGGTCTGATCTCTACGTCATGCCACTGTTCACCCCTTCGACCACCA CTTAGTCCTCGTACGAACGGTTTCCCATCGGCATCCACCACCGGGGACGT GCTAAGTGTTTGGCTGGCCGGGTGGCGTCGCTGGGGTTCTAGAGCGAGCG AAGGGCCAACAACCGCCACCAGCAAACATCATCAATTCTCGCCTTGGCTC CACACCCACCCACTCACTCACCCACCCGACCTACGCCCGTCCCAACCCCA CCGTACATATGCACAGAAAGGTCACAGCAACCATTCAACTGACAACAGCA TGGCGCTCAAGCGGATCAACAAGGAATTGCAGGACCTGGGACGAGATCCG CCTGCAAACTGCTCGGCAGGCCCTGTGGGCGACGACCTTTTTCACTGGCA AGCCACCATCATGGGTCCTGATGACTCGCCTTACAGCGGCGCCGTCTTCT TCCTCAACATTCATTTCCCTGCCGACTACCCCTTTAAGCCCCCCAAGGTG AACTTCACGACGCGTATTTACCACTGCAACATTAACGCGAACGGCGGCAT CTGCCTGGACATCCTGAAGGACCAGTGGAGCCCTGCCCTGACAGTCTCCA AGGTCCTACTCTCCATCTGCTCCCTCCTGACTGACCCCAACCCAGACGAT CCCCTGGTGCCCGAGATCGCACAGCTGTACCGCACGGACCGGGGAAGGCA CGACGCCACCGCACGCGAGTGGACCGCCAAGTATGCGATGTAGTCGGAGC TTGGTCTCCTCCTCCCTGATGGACCCCCCCCCCCGAGCAGCACCAACAAG TACGAAAATAATCACAAGAAGAAGAGGAAGGTGAAGAATTGAATTAAGGA AGGAAGGAAAGGAAGGGAGATAGAATGGGAGGAAGGGAGGGAGGGAGAGA GGGAGGAAGGGGCTTGCCCTTCTAATAAGTGTACATATCATCGTCCATAG CGTCAGTCTCAGTGAGCAGTCTGTCATGTGGGCCACACATAGAGACAGGC GCCCAACACGCACTCACGAGAGAGAGAACAGAGAGGGTGCGAGGAGGAGA GAGAGAGGGTGGGGCTTGGGGAGAAGAGGGAAGGCGGGAATGAAAGGGAC GAGGCAAGACGAAGCAGCCCATACGTCGTGTACGTCCTCGGTGCATTGAG GATTGTGGAAGATATCGGGAGGAGTGAGAAGAAGGAGAAAGAAAAAGAGA GAGGAAACAATGAGGAATGTGGAAGGAGTAGGGAAAAGTGAGAGGAGAAG AAGAGAGAAAAAGAGAGAGGAAGAGAGAGGAAGGGGGTAAGGACAGGAGT ATTGTCGGTTTTGATTCAGAGTAGTTTTGAGAGGCAGCATGTCAGTGCTC TTTCTCTTCTTCTCCTAGTTTAATCGCTATTCCTCTTCCTTGTCCTCTTT CTGCCTATTTCCTGCGTATCCGTCCTCGTCTCTTTTGCCGGCCTTTATCT TTGTCTTGTGAGCACTCTGGACGTGGACGTACGGATGGTGGTGATTGGTC TTGTGAGGATGAGGGCGGTGCAGATGGTGGTGGTTGTGGTGATGATGGTG GTGGTAAGAAGAAATCACAAAAGAAGCAACGGACGGGCCTTGAAAACATT AAAAATCGCTGCGACTACAACCAACGCTCTTCCTCCTCCCTCTCCCTATA CCTATCTCCCTCCCCTGTCGACCTGGAACTATCTCCCTTCCCTGTCGACC TACGCTGTTCCGCGACCCCGGCATTGGTGCCAGGTGAATAAATGTTTACA CACTCATCACGAGCCTCGCCTTCTCGAGAGCGTCGTGTCTAACGAAGAAA ACCCAAAAACACACGAACACAAACACACAACACGCACAGCGTGGGGATGC CGTGCCATTCAATAGTTCTTCCACCGACAGGCATGGACAGGGGCAGGCAG GCGAGGCTGCTACATTTTAAGAATGAGTTGCTTCTCTTATAATCACACGA ATGCCTGGATTATATCATTCTTTCGTCCCTGCATGGCTTGCCCCTTTATC AGCTATACACGTCCTATTCCCTTCACCTCGGCCCATTTCC back to topprotein sequence of NO11G03490.1 >NO11G03490.1-protein ID=NO11G03490.1-protein|Name=NO11G03490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp MGLRTKLISSSLALREGQGKESFAPPFPNDGDGLISTSCHCSPLRPPLSP RTNGFPSASTTGDVLSVWLAGWRRWGSRASEGPTTATSKHHQFSPWLHTH PLTHPPDLRPSQPHRTYAQKGHSNHSTDNSMALKRINKELQDLGRDPPAN CSAGPVGDDLFHWQATIMGPDDSPYSGAVFFLNIHFPADYPFKPPKVNFT TRIYHCNINANGGICLDILKDQWSPALTVSKVLLSICSLLTDPNPDDPLV PEIAQLYRTDRGRHDATAREWTAKYAM* back to topmRNA from alignment at chr11:1122342..1125630+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G03490.1 ID=NO11G03490.1|Name=NO11G03490.1|organism=Nannochloropsis oceanica|type=mRNA|length=3289bp|location=Sequence derived from alignment at chr11:1122342..1125630+ (Nannochloropsis oceanica) AGTCATCACATGGGCCTCCGGACAAAGTTAATTTCGAGTTCTCTGGCCCT
CAGGGAGGGTCAAGGAAAAGAGTCCTTCGCCCCCCCTTTCCCTAATGACG
GTGATGGTCTGATCTCTACGTCATGCCACTGTTCACCCCTTCGACCACCA
CTTAGTCCTCGTACGAACGGTTTCCCATCGGCATCCACCACCGGGGACGT
GCTAAGTGTTTGGCTGGCCGGGTGGCGTCGCTGGGGTTCTAGAGCGAGCG
AAGGGCCAACAACCGCCACCAGCAAACATCATCAATTCTCGCCTTGGCTC
CACACCCACCCACTCACTCACCCACCCGACCTACGCCCGTCCCAACCCCA
CCGTACATATGCACAGAAAGGTCACAGCAACCATTCAACTGACAACAGCA
TGGCGCTCAAGCGGATCAACAAGGAATTGCAGGACCTGGGTGCGTCCGGG
AGGGAGGGCGGAAGGGAACGAACAAGAAGCTGGAAGGGGAGAGAGGAGAT
GGCTTCTTTGGAGGTGTACTTCGTCTGGAATGACACCAGCTACAGACCCA
CAGGGCTATATGATTTCAAGCAATTGTACATTTCTGTCGCACGCAACCCT
GGCTCCCGTTGTGTCCACTCACCGCTCTTTTTTCCCCCTGTCCCTTCTTC
CCCCTCTTCTTCTGTCTTCCTCTCCCCTTCCTTTTCGTTGTAGGACGAGA
TCCGCCTGCAAACTGCTCGGCAGGCCCTGTGGGCGACGACCTTTTTCACT
GGCAAGCCACCATCATGGGTCCTGGTACGTGCTTGTCCGGTGGCTGCTTC
TCCCGTCTTCCTTAGAATTAACCTGGCCTTTGTTTTCTTCGCTGGGCCAA
CGTATCCCCACCCTTTCATCTCTCATCTCCTCCCTACTCTATGCAGATGA
CTCGCCTTACAGCGGCGCCGTCTTCTTCCTCAACATTCATTTCCCTGCCG
ACTACCCCTTTAAGCCCCCCAAGGTACGTGGGCTAGGTCGGGAGATACGA
CGGTTTGTCGGGGGGTTTCAAAACAGCCAGCTCTGAAGCCTGAGTGTGCC
TCGGCACCCACACACTCTGTCCCCGCCCCCTCTGCCACAGGTGAACTTCA
CGACGCGTATTTACCACTGCAACATTAACGCGAACGGCGGCATCTGCCTG
GACATCCTGAAGGACCAGTGGAGCCCTGCCCTGACAGTCTCCAAGGTATT
TATGTTGCCCCCACCTACCCATCCATCTCCGTATCTACCCACCCATCCAC
CTACCTACCTATCTACCCCTTTATCTATCCATTGTATCTAGCCACATAAA
TACGTATCTATCTACTTATCTACCTACCTATCTACCTACCTACAAACCTA
ATCTATATCCATGTATCTAGCTACCTGAATACTTATCTATATATATACGG
AGGCCCATCTCTCCCTCCCTGCATGTCCCGCCTCCGTATTTTCCTTCATT
TCAGCCTACGCATATATCCCAAACGCCGCAATTTAGAAAATGACATCATC
AAATTGGCACACGCATACCCTCCCTCACCCCTCCCTCCGTCCCTCCCTCC
GTCCTTCCCTCCCTCGCCGTTTTTCAGGTCCTACTCTCCATCTGCTCCCT
CCTGACTGACCCCAACCCAGACGATCCCCTGGTGCCCGAGATCGCACAGC
TGTACCGCACGGACCGGGGAAGGCACGACGCCACCGCACGCGAGTGGACC
GCCAAGTACGTGCCGTCGAGAGGGGGTCAGGGAGGGAGGAAGGGAGGGGG
GAAGGGAGGGAGGGAGGGAGGGGGGAAGGGAGGGAGGATGCAAATGATGA
TGGGTGGGTGTGGGGGTGGTTGGTGTGTGTATGTGTGTGTCTAAAAGAGA
GGGGTGGATTGGGATAACCAGTTCAAGACAAAAGGTTTGAAAGCCCAGGA
CGACTTGACCCGCCCTTTCCGTCTGTCCTGCCTCCCTCACCTCACCTCTC
TCCCTGCCCTCCTCGCTTTCTTATGACAGGTATGCGATGTAGTCGGAGCT
TGGTCTCCTCCTCCCTGATGGACCCCCCCCCCCGAGCAGCACCAACAAGT
ACGAAAATAATCACAAGAAGAAGAGGAAGGTGAAGAATTGAATTAAGGAA
GGAAGGAAAGGAAGGGAGATAGAATGGGAGGAAGGGAGGGAGGGAGAGAG
GGAGGAAGGGGCTTGCCCTTCTAATAAGTGTACATATCATCGTCCATAGC
GTCAGTCTCAGTGAGCAGTCTGTCATGTGGGCCACACATAGAGACAGGCG
CCCAACACGCACTCACGAGAGAGAGAACAGAGAGGGTGCGAGGAGGAGAG
AGAGAGGGTGGGGCTTGGGGAGAAGAGGGAAGGCGGGAATGAAAGGGACG
AGGCAAGACGAAGCAGCCCATACGTCGTGTACGTCCTCGGTGCATTGAGG
ATTGTGGAAGATATCGGGAGGAGTGAGAAGAAGGAGAAAGAAAAAGAGAG
AGGAAACAATGAGGAATGTGGAAGGAGTAGGGAAAAGTGAGAGGAGAAGA
AGAGAGAAAAAGAGAGAGGAAGAGAGAGGAAGGGGGTAAGGACAGGAGTA
TTGTCGGTTTTGATTCAGAGTAGTTTTGAGAGGCAGCATGTCAGTGCTCT
TTCTCTTCTTCTCCTAGTTTAATCGCTATTCCTCTTCCTTGTCCTCTTTC
TGCCTATTTCCTGCGTATCCGTCCTCGTCTCTTTTGCCGGCCTTTATCTT
TGTCTTGTGAGCACTCTGGACGTGGACGTACGGATGGTGGTGATTGGTCT
TGTGAGGATGAGGGCGGTGCAGATGGTGGTGGTTGTGGTGATGATGGTGG
TGGTAAGAAGAAATCACAAAAGAAGCAACGGACGGGCCTTGAAAACATTA
AAAATCGCTGCGACTACAACCAACGCTCTTCCTCCTCCCTCTCCCTATAC
CTATCTCCCTCCCCTGTCGACCTGGAACTATCTCCCTTCCCTGTCGACCT
ACGCTGTTCCGCGACCCCGGCATTGGTGCCAGGTGAATAAATGTTTACAC
ACTCATCACGAGCCTCGCCTTCTCGAGAGCGTCGTGTCTAACGAAGAAAA
CCCAAAAACACACGAACACAAACACACAACACGCACAGCGTGGGGATGCC
GTGCCATTCAATAGTTCTTCCACCGACAGGCATGGACAGGGGCAGGCAGG
CGAGGCTGCTACATTTTAAGAATGAGTTGCTTCTCTTATAATCACACGAA
TGCCTGGATTATATCATTCTTTCGTCCCTGCATGGCTTGCCCCTTTATCA
GCTATACACGTCCTATTCCCTTCACCTCGGCCCATTTCC back to topCoding sequence (CDS) from alignment at chr11:1122342..1125630+ >NO11G03490.1 ID=NO11G03490.1|Name=NO11G03490.1|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at chr11:1122342..1125630+ (Nannochloropsis oceanica) ATGGGCCTCCGGACAAAGTTAATTTCGAGTTCTCTGGCCCTCAGGGAGGG TCAAGGAAAAGAGTCCTTCGCCCCCCCTTTCCCTAATGACGGTGATGGTC TGATCTCTACGTCATGCCACTGTTCACCCCTTCGACCACCACTTAGTCCT CGTACGAACGGTTTCCCATCGGCATCCACCACCGGGGACGTGCTAAGTGT TTGGCTGGCCGGGTGGCGTCGCTGGGGTTCTAGAGCGAGCGAAGGGCCAA CAACCGCCACCAGCAAACATCATCAATTCTCGCCTTGGCTCCACACCCAC CCACTCACTCACCCACCCGACCTACGCCCGTCCCAACCCCACCGTACATA TGCACAGAAAGGTCACAGCAACCATTCAACTGACAACAGCATGGCGCTCA AGCGGATCAACAAGGAATTGCAGGACCTGGGACGAGATCCGCCTGCAAAC TGCTCGGCAGGCCCTGTGGGCGACGACCTTTTTCACTGGCAAGCCACCAT CATGGGTCCTGATGACTCGCCTTACAGCGGCGCCGTCTTCTTCCTCAACA TTCATTTCCCTGCCGACTACCCCTTTAAGCCCCCCAAGGTGAACTTCACG ACGCGTATTTACCACTGCAACATTAACGCGAACGGCGGCATCTGCCTGGA CATCCTGAAGGACCAGTGGAGCCCTGCCCTGACAGTCTCCAAGGTCCTAC TCTCCATCTGCTCCCTCCTGACTGACCCCAACCCAGACGATCCCCTGGTG CCCGAGATCGCACAGCTGTACCGCACGGACCGGGGAAGGCACGACGCCAC CGCACGCGAGTGGACCGCCAAGTATGCGATGTAG back to top
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