NO11G03100.1, NO11G03100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G03100.1
Unique NameNO11G03100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1884
Alignment locationchr11:968287..970170 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:968287..970170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G03100.1 vs.
Match: EWM24902.1 (Transferase [Nannochloropsis gaditana])

HSP 1 Score: 654.4 bits (1687), Expect = 3.500e-184
Identity = 364/604 (60.26%), Postives = 428/604 (70.86%), Query Frame = 0 
Query:   17 KAEFISVRKSLVQPATPPPSSQPPQVPLAGCDMIYDHFQIKAAFFFTEILNPPLLKASLAKALDAYPLLAGRARKSGSSAAWIDCCGSGVEVVEQVARVTGTDGLVHGYTNEFMDSFARGAFMTKANDKSSPLMTVTLTEVTYGESLSCRYRGISAFSCRCAGEGDEDEIEERREESAGAAASPPVPDTASRMVRTNASSTSPPPQFNPPSTSLPPIPSRTVPSPGAISPPTIRYAIGLSCSHSAADGCAISAFLGTWVRAGANLPMQHSIHTRGPLLNHGPLDDERQPSPAKYRLLSPLGKAMLMWRFAWHQIGCEVAILRFDREEVEEVKRQAMKRLHGSEQWVSTSNALAAHLWPIMSDLLT--GARKGGRGEGTGLLVPMSVVVNSRKQLGLPTHYCGNVVSIQDVPDGKTEDDLTARALKVRYASAASEEEARRDHSYMQRVGTRGQGDSLSYKRMADMIMGKPGLLWDDISSFSSGAMAHLRFGGASPVGADLSALSIPGMMFVVAPPLGQEGGGEGGKEVRVALPKKLARKLRSSEWQGRVHKFRRWPTARASPALIPAEGEGGGEGEEKTKVEGG---ILGLEEDGKDSHKRSEEG 616
            KAEF+ +RK+L+ PATP P    P+VPLAGCD IYDHFQ+KAAFFF E LNP LLK SLAKALDAYPLLAGRAR+  +  AWIDCCGSGV+V+EQ+ARVTG  GL HG T  FM   ARG F T  N+ +SP++TVTLTEVTYGES SC  R +SA SCRC GE DE E E    E AG       P + S          S  P F+  ST+  P  +   P+PG    P I+YA+GLSCSHS  DG  I+ FLG W RA  +LP+Q +++ R  LL+ GP  + R P PAK+R +S   KA ++WRFAW Q GCE  ILRFD+ EVEE+KRQAMKRLHG+EQWVSTSNALAAHLWPI+S L +  G  +GGR E  G LVPMS+VVNSRK L +P HYCGNVVSIQDVP  +  +DLT+RALK+RYASA SEEEA +DH YMQ + +RG+   + Y RM DMI GKPG+LWDDISSF SGAM HL+FG A P+GADL  L IPG MFVVAPP    G GEGGKEVRVAL  K+ARKLRSSEWQG+VH++R WP A AS A+  A+G GGGEGEE    EGG       +E+  D  K+ EEG
Sbjct:    8 KAEFLLIRKTLIPPATPAPPGPAPRVPLAGCDAIYDHFQVKAAFFFNEPLNPTLLKVSLAKALDAYPLLAGRARQGSNRDAWIDCCGSGVQVIEQIARVTGKGGLHHGDTLAFMPRLARGGFKTAVNNAASPILTVTLTEVTYGESFSCGPRLLSACSCRCNGE-DEWEQEAAGTEGAGGGDVERRPPSPSGTPGGTDGENSLRPTFHASSTTPVPASTPAAPNPG----PVIQYALGLSCSHSVGDGSTIAHFLGAWSRASTHLPIQPALNNRDLLLDPGPWGEARLPPPAKFREVSTWTKARILWRFAWQQGGCETVILRFDKSEVEEIKRQAMKRLHGTEQWVSTSNALAAHLWPIVSALWSRQGESEGGR-ESDG-LVPMSIVVNSRKHLKVPGHYCGNVVSIQDVPACEASEDLTSRALKIRYASACSEEEAWQDHHYMQWMHSRGRAGKILYTRMKDMIEGKPGILWDDISSFQSGAMVHLKFGKAVPMGADLLVLPIPGTMFVVAPP-ATRGQGEGGKEVRVALTAKMARKLRSSEWQGKVHRYRPWPMAHASSAM-EAKG-GGGEGEEARLEEGGEETKFEEKEEVLDGEKKEEEG 601
The following BLAST results are available for this feature:
BLAST of NO11G03100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24902.13.500e-18460.26Transferase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G03100NO11G03100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G03100.1NO11G03100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G03100.1.cds1NO11G03100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G03100.1 ID=NO11G03100.1|Name=NO11G03100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1884bp
ATGACCCCTTCATGCACCACTTCGAGTAGCTCGGCAACGTCCACGCGCAA
GGCCGAGTTTATTTCGGTTCGCAAGTCCCTCGTCCAACCCGCCACACCCC
CTCCTTCCAGCCAACCCCCTCAAGTGCCCCTCGCAGGCTGCGATATGATT
TACGATCACTTTCAAATTAAGGCCGCTTTCTTCTTTACCGAGATCCTGAA
CCCCCCGTTGCTGAAAGCAAGCCTGGCTAAGGCCTTGGATGCATATCCGC
TGCTTGCGGGCCGCGCACGGAAATCAGGTAGCAGTGCTGCGTGGATTGAT
TGTTGTGGATCAGGCGTGGAGGTCGTTGAGCAAGTGGCGCGTGTGACGGG
CACGGACGGATTGGTACACGGATATACAAATGAATTCATGGATTCGTTTG
CTCGAGGGGCGTTCATGACGAAAGCGAACGACAAGAGCTCCCCTCTAATG
ACTGTGACACTGACGGAGGTGACGTACGGAGAAAGCTTGTCCTGTCGTTA
CCGGGGTATCTCGGCCTTTTCCTGTCGCTGCGCGGGGGAGGGAGACGAGG
ACGAAATAGAGGAGAGAAGAGAGGAATCAGCAGGAGCAGCAGCGTCCCCG
CCCGTGCCTGATACCGCAAGCCGCATGGTCAGGACCAACGCCAGCAGCAC
CTCTCCCCCACCCCAATTTAACCCACCCTCCACCAGCCTTCCCCCCATAC
CTTCCCGCACCGTCCCTTCACCCGGCGCTATCTCTCCCCCAACCATTCGA
TACGCCATCGGTCTCTCCTGCTCCCATTCCGCCGCGGACGGGTGTGCGAT
TTCTGCCTTTCTGGGCACATGGGTCAGAGCGGGAGCCAACCTGCCTATGC
AACACTCTATCCACACCCGAGGTCCCCTCCTAAACCATGGGCCTTTGGAC
GACGAGCGTCAGCCATCCCCTGCTAAATATCGCCTTCTTTCGCCCCTGGG
CAAGGCCATGTTGATGTGGCGTTTTGCGTGGCACCAGATTGGGTGCGAGG
TGGCCATTTTGAGGTTTGACAGGGAGGAAGTGGAGGAGGTGAAGAGACAG
GCAATGAAACGCTTGCATGGAAGTGAGCAATGGGTCTCGACGAGCAATGC
CCTGGCGGCCCATCTGTGGCCAATTATGTCGGATTTATTGACTGGAGCAC
GAAAGGGAGGGCGGGGGGAAGGGACGGGTCTGTTGGTGCCCATGAGTGTG
GTGGTAAACAGTAGGAAGCAACTGGGCTTGCCGACGCATTATTGCGGAAA
CGTAGTGTCGATCCAGGACGTACCCGACGGGAAGACCGAAGATGACCTCA
CAGCCCGTGCCCTTAAAGTCCGTTATGCGTCAGCGGCCTCTGAGGAGGAA
GCGCGACGCGATCATTCTTATATGCAGAGGGTAGGGACTCGAGGCCAGGG
AGACTCTCTTTCGTACAAGCGAATGGCGGACATGATCATGGGCAAGCCAG
GGCTGCTCTGGGACGATATTTCAAGTTTTTCGAGCGGTGCCATGGCTCAC
TTGAGATTTGGGGGCGCCTCACCCGTTGGAGCAGACCTCTCCGCGCTCTC
CATTCCGGGAATGATGTTTGTCGTGGCCCCTCCGCTAGGGCAGGAGGGAG
GAGGGGAGGGAGGGAAGGAGGTGAGGGTGGCGTTGCCAAAGAAATTAGCG
CGGAAGTTGAGGAGCAGTGAGTGGCAGGGGAGGGTTCATAAATTTAGGCG
GTGGCCCACGGCGAGGGCGTCGCCGGCTTTGATACCTGCCGAGGGGGAGG
GAGGGGGAGAGGGAGAGGAAAAGACAAAAGTGGAAGGTGGGATTTTGGGA
CTTGAGGAGGATGGGAAGGACTCACATAAGAGATCGGAGGAAGGGGAACC
GACAATGATGAAGGAGAAGGTTTGGGGGCTGTAG
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protein sequence of NO11G03100.1

>NO11G03100.1-protein ID=NO11G03100.1-protein|Name=NO11G03100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=628bp
MTPSCTTSSSSATSTRKAEFISVRKSLVQPATPPPSSQPPQVPLAGCDMI
YDHFQIKAAFFFTEILNPPLLKASLAKALDAYPLLAGRARKSGSSAAWID
CCGSGVEVVEQVARVTGTDGLVHGYTNEFMDSFARGAFMTKANDKSSPLM
TVTLTEVTYGESLSCRYRGISAFSCRCAGEGDEDEIEERREESAGAAASP
PVPDTASRMVRTNASSTSPPPQFNPPSTSLPPIPSRTVPSPGAISPPTIR
YAIGLSCSHSAADGCAISAFLGTWVRAGANLPMQHSIHTRGPLLNHGPLD
DERQPSPAKYRLLSPLGKAMLMWRFAWHQIGCEVAILRFDREEVEEVKRQ
AMKRLHGSEQWVSTSNALAAHLWPIMSDLLTGARKGGRGEGTGLLVPMSV
VVNSRKQLGLPTHYCGNVVSIQDVPDGKTEDDLTARALKVRYASAASEEE
ARRDHSYMQRVGTRGQGDSLSYKRMADMIMGKPGLLWDDISSFSSGAMAH
LRFGGASPVGADLSALSIPGMMFVVAPPLGQEGGGEGGKEVRVALPKKLA
RKLRSSEWQGRVHKFRRWPTARASPALIPAEGEGGGEGEEKTKVEGGILG
LEEDGKDSHKRSEEGEPTMMKEKVWGL*
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mRNA from alignment at chr11:968287..970170+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G03100.1 ID=NO11G03100.1|Name=NO11G03100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1884bp|location=Sequence derived from alignment at chr11:968287..970170+ (Nannochloropsis oceanica)
ATGACCCCTTCATGCACCACTTCGAGTAGCTCGGCAACGTCCACGCGCAA
GGCCGAGTTTATTTCGGTTCGCAAGTCCCTCGTCCAACCCGCCACACCCC
CTCCTTCCAGCCAACCCCCTCAAGTGCCCCTCGCAGGCTGCGATATGATT
TACGATCACTTTCAAATTAAGGCCGCTTTCTTCTTTACCGAGATCCTGAA
CCCCCCGTTGCTGAAAGCAAGCCTGGCTAAGGCCTTGGATGCATATCCGC
TGCTTGCGGGCCGCGCACGGAAATCAGGTAGCAGTGCTGCGTGGATTGAT
TGTTGTGGATCAGGCGTGGAGGTCGTTGAGCAAGTGGCGCGTGTGACGGG
CACGGACGGATTGGTACACGGATATACAAATGAATTCATGGATTCGTTTG
CTCGAGGGGCGTTCATGACGAAAGCGAACGACAAGAGCTCCCCTCTAATG
ACTGTGACACTGACGGAGGTGACGTACGGAGAAAGCTTGTCCTGTCGTTA
CCGGGGTATCTCGGCCTTTTCCTGTCGCTGCGCGGGGGAGGGAGACGAGG
ACGAAATAGAGGAGAGAAGAGAGGAATCAGCAGGAGCAGCAGCGTCCCCG
CCCGTGCCTGATACCGCAAGCCGCATGGTCAGGACCAACGCCAGCAGCAC
CTCTCCCCCACCCCAATTTAACCCACCCTCCACCAGCCTTCCCCCCATAC
CTTCCCGCACCGTCCCTTCACCCGGCGCTATCTCTCCCCCAACCATTCGA
TACGCCATCGGTCTCTCCTGCTCCCATTCCGCCGCGGACGGGTGTGCGAT
TTCTGCCTTTCTGGGCACATGGGTCAGAGCGGGAGCCAACCTGCCTATGC
AACACTCTATCCACACCCGAGGTCCCCTCCTAAACCATGGGCCTTTGGAC
GACGAGCGTCAGCCATCCCCTGCTAAATATCGCCTTCTTTCGCCCCTGGG
CAAGGCCATGTTGATGTGGCGTTTTGCGTGGCACCAGATTGGGTGCGAGG
TGGCCATTTTGAGGTTTGACAGGGAGGAAGTGGAGGAGGTGAAGAGACAG
GCAATGAAACGCTTGCATGGAAGTGAGCAATGGGTCTCGACGAGCAATGC
CCTGGCGGCCCATCTGTGGCCAATTATGTCGGATTTATTGACTGGAGCAC
GAAAGGGAGGGCGGGGGGAAGGGACGGGTCTGTTGGTGCCCATGAGTGTG
GTGGTAAACAGTAGGAAGCAACTGGGCTTGCCGACGCATTATTGCGGAAA
CGTAGTGTCGATCCAGGACGTACCCGACGGGAAGACCGAAGATGACCTCA
CAGCCCGTGCCCTTAAAGTCCGTTATGCGTCAGCGGCCTCTGAGGAGGAA
GCGCGACGCGATCATTCTTATATGCAGAGGGTAGGGACTCGAGGCCAGGG
AGACTCTCTTTCGTACAAGCGAATGGCGGACATGATCATGGGCAAGCCAG
GGCTGCTCTGGGACGATATTTCAAGTTTTTCGAGCGGTGCCATGGCTCAC
TTGAGATTTGGGGGCGCCTCACCCGTTGGAGCAGACCTCTCCGCGCTCTC
CATTCCGGGAATGATGTTTGTCGTGGCCCCTCCGCTAGGGCAGGAGGGAG
GAGGGGAGGGAGGGAAGGAGGTGAGGGTGGCGTTGCCAAAGAAATTAGCG
CGGAAGTTGAGGAGCAGTGAGTGGCAGGGGAGGGTTCATAAATTTAGGCG
GTGGCCCACGGCGAGGGCGTCGCCGGCTTTGATACCTGCCGAGGGGGAGG
GAGGGGGAGAGGGAGAGGAAAAGACAAAAGTGGAAGGTGGGATTTTGGGA
CTTGAGGAGGATGGGAAGGACTCACATAAGAGATCGGAGGAAGGGGAACC
GACAATGATGAAGGAGAAGGTTTGGGGGCTGTAG
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Coding sequence (CDS) from alignment at chr11:968287..970170+

>NO11G03100.1 ID=NO11G03100.1|Name=NO11G03100.1|organism=Nannochloropsis oceanica|type=CDS|length=1884bp|location=Sequence derived from alignment at chr11:968287..970170+ (Nannochloropsis oceanica)
ATGACCCCTTCATGCACCACTTCGAGTAGCTCGGCAACGTCCACGCGCAA
GGCCGAGTTTATTTCGGTTCGCAAGTCCCTCGTCCAACCCGCCACACCCC
CTCCTTCCAGCCAACCCCCTCAAGTGCCCCTCGCAGGCTGCGATATGATT
TACGATCACTTTCAAATTAAGGCCGCTTTCTTCTTTACCGAGATCCTGAA
CCCCCCGTTGCTGAAAGCAAGCCTGGCTAAGGCCTTGGATGCATATCCGC
TGCTTGCGGGCCGCGCACGGAAATCAGGTAGCAGTGCTGCGTGGATTGAT
TGTTGTGGATCAGGCGTGGAGGTCGTTGAGCAAGTGGCGCGTGTGACGGG
CACGGACGGATTGGTACACGGATATACAAATGAATTCATGGATTCGTTTG
CTCGAGGGGCGTTCATGACGAAAGCGAACGACAAGAGCTCCCCTCTAATG
ACTGTGACACTGACGGAGGTGACGTACGGAGAAAGCTTGTCCTGTCGTTA
CCGGGGTATCTCGGCCTTTTCCTGTCGCTGCGCGGGGGAGGGAGACGAGG
ACGAAATAGAGGAGAGAAGAGAGGAATCAGCAGGAGCAGCAGCGTCCCCG
CCCGTGCCTGATACCGCAAGCCGCATGGTCAGGACCAACGCCAGCAGCAC
CTCTCCCCCACCCCAATTTAACCCACCCTCCACCAGCCTTCCCCCCATAC
CTTCCCGCACCGTCCCTTCACCCGGCGCTATCTCTCCCCCAACCATTCGA
TACGCCATCGGTCTCTCCTGCTCCCATTCCGCCGCGGACGGGTGTGCGAT
TTCTGCCTTTCTGGGCACATGGGTCAGAGCGGGAGCCAACCTGCCTATGC
AACACTCTATCCACACCCGAGGTCCCCTCCTAAACCATGGGCCTTTGGAC
GACGAGCGTCAGCCATCCCCTGCTAAATATCGCCTTCTTTCGCCCCTGGG
CAAGGCCATGTTGATGTGGCGTTTTGCGTGGCACCAGATTGGGTGCGAGG
TGGCCATTTTGAGGTTTGACAGGGAGGAAGTGGAGGAGGTGAAGAGACAG
GCAATGAAACGCTTGCATGGAAGTGAGCAATGGGTCTCGACGAGCAATGC
CCTGGCGGCCCATCTGTGGCCAATTATGTCGGATTTATTGACTGGAGCAC
GAAAGGGAGGGCGGGGGGAAGGGACGGGTCTGTTGGTGCCCATGAGTGTG
GTGGTAAACAGTAGGAAGCAACTGGGCTTGCCGACGCATTATTGCGGAAA
CGTAGTGTCGATCCAGGACGTACCCGACGGGAAGACCGAAGATGACCTCA
CAGCCCGTGCCCTTAAAGTCCGTTATGCGTCAGCGGCCTCTGAGGAGGAA
GCGCGACGCGATCATTCTTATATGCAGAGGGTAGGGACTCGAGGCCAGGG
AGACTCTCTTTCGTACAAGCGAATGGCGGACATGATCATGGGCAAGCCAG
GGCTGCTCTGGGACGATATTTCAAGTTTTTCGAGCGGTGCCATGGCTCAC
TTGAGATTTGGGGGCGCCTCACCCGTTGGAGCAGACCTCTCCGCGCTCTC
CATTCCGGGAATGATGTTTGTCGTGGCCCCTCCGCTAGGGCAGGAGGGAG
GAGGGGAGGGAGGGAAGGAGGTGAGGGTGGCGTTGCCAAAGAAATTAGCG
CGGAAGTTGAGGAGCAGTGAGTGGCAGGGGAGGGTTCATAAATTTAGGCG
GTGGCCCACGGCGAGGGCGTCGCCGGCTTTGATACCTGCCGAGGGGGAGG
GAGGGGGAGAGGGAGAGGAAAAGACAAAAGTGGAAGGTGGGATTTTGGGA
CTTGAGGAGGATGGGAAGGACTCACATAAGAGATCGGAGGAAGGGGAACC
GACAATGATGAAGGAGAAGGTTTGGGGGCTGTAG
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Synonyms
Publications