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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:938032..941348 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G02990.2 vs.
Match: EWM24917.1 (fad nad -binding domain-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 486.1 bits (1250), Expect = 9.400e-134 Identity = 236/318 (74.21%), Postives = 274/318 (86.16%), Query Frame = 0
Query: 15 EDRHFIIVGAGPVGLLAAILLVQEIDALQVTIYESRDGLITDLQESYPVGVNPRGARALDRARPDMAIALRKRGVMVDAWKIYAGRRMIAEVPSGLVVGTTRSMINEMLYEEVRKHFRGRIEIKWGHRLKSLDLLERRLVFDVKQPATDPDLARTYEEVTVEGGGARMLACDGVWSEVRAFAENHVEGFKSQITPWGVQFRLLFSKPGAGALAPYLKPENHYVMSGIYVSIIEGNVWVMGLGIDDGLPAQTRDLLLATESTPTRVAALRAYVTKKAPLAAPFLTEEDLSMYFKRRSFRGAMVKVNRLNLGEWGVLLGG 333
E+ +II+GAGPVGLLAAILLVQE A QV+IYE+RDGL TDL ESYP+GVNPRG+RALDRARPDMAIALR R M+DAW+IYAG RM+AEVPSGLVVGTTRS INE+LYEEV KHF+ +I+I W HRLK+LD+LER L+FDVK+P D +LA+TYEEVTV+GGGAR+LACDGVWS VR FAE HVEGF S ++PW VQFRLLFSKPGAG L P L+P HYVM GIY+SIIE +VWV+GLGI + LP QTR+LL AT +TP R+AALRAYVTKKAPLAAPFLT EDL +YF R++F GAMVKV++LN+GEW VLLGG
Sbjct: 12 ENNRYIIIGAGPVGLLAAILLVQEKHAAQVSIYEARDGLTTDLHESYPIGVNPRGSRALDRARPDMAIALRMRSSMIDAWRIYAGSRMVAEVPSGLVVGTTRSTINEILYEEVCKHFQEQIKILWSHRLKTLDILERSLIFDVKRPRADEELAQTYEEVTVQGGGARVLACDGVWSVVRGFAEKHVEGFTSNVSPWRVQFRLLFSKPGAGKLVPELEPRYHYVMGGIYLSIIEEDVWVLGLGIGEHLPRQTRELLTATVATPERIAALRAYVTKKAPLAAPFLTAEDLELYFTRKTFGGAMVKVSQLNIGEWAVLLGG 329
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G02990.2 ID=NO11G02990.2|Name=NO11G02990.2|organism=Nannochloropsis oceanica|type=mRNA|length=3113bp TATTTGCGGGTGTATCCTGTGTCTTGTGTGCATGAGGATGTCGCCACGAT TTGTGAGCTCAAGAGCCGGTTTGGACACCACCAGCCTGCAAGCCCCTTCT CACAAATCAGCAGTAAGCTTCCTGCAAGTCCATTCATTGAGCTTCTCACG CTCTTCATCCCGTCTCCGCTCGTCCATACCCGGCACACACATCCATAGAG GCCCGGTGCAAACACACAAACGCACGCCATGACGACGTCGGGCGAGACAA CAGGCCAGAAGTTGCATCCCGAAGACCGGCACTTCATTATTGTGGGGGCG GGCCCCGTGGGTCTCCTGGCCGCAATCCTTCTGGTCCAAGAGATCGACGC CCTTCAGGTGACAATATACGAATCTCGTGATGGCCTCATTACGGATCTGC AAGAGAGCTATCCCGTTGGCGTCAACCCTCGAGGGGCCAGGGCGTTGGAT CGGGCTAGGCCCGACATGGCCATTGCCCTGCGCAAACGGGGCGTCATGGT TGATGCCTGGAAGATTTATGCTGGCAGACGGATGATCGCTGAGGTACCAT CGGGCTTGGTGGTGGGTACTACGCGGAGCATGATTAACGAGATGTTGTAT GAGGAGGTCCGGAAGCATTTTCGAGGACGGATTGAAATCAAGTGGGGGCA TCGCCTCAAGTCCTTGGACTTGCTCGAACGCCGCTTGGTCTTTGACGTAA AACAGCCAGCGACGGATCCTGACCTGGCACGGACATATGAGGAAGTGACG GTGGAGGGAGGGGGGGCAAGAATGTTGGCATGCGATGGGGTCTGGAGCGA GGTGCGTGCGTTTGCAGAGAACCACGTGGAGGGCTTCAAGAGTCAAATCA CTCCCTGGGGGGTTCAATTTCGACTGCTCTTTTCTAAACCTGGTGCGGGA GCCTTGGCGCCGTACCTGAAGCCTGAGAATCACTATGTAATGAGCGGGAT CTACGTGTCAATCATTGAGGGCAACGTGTGGGTCATGGGCTTAGGGATAG ATGATGGTCTTCCTGCCCAAACCCGAGATCTCCTTCTCGCCACGGAATCG ACGCCTACACGTGTGGCGGCCTTGCGGGCATATGTCACGAAGAAGGCACC CTTGGCGGCCCCATTCTTGACGGAGGAGGATTTGAGTATGTATTTTAAGA GGAGGAGCTTTCGCGGAGCGATGGTGAAGGTTAACCGACTTAATCTTGGG GAGTGGGGCGTGTTGCTGGGTGGTACGTACAGAGGCGTGGGAGAACAAGA AGGGGAAATGATGAAGAGGGGGAGGGGCAATGGATTTGATTCCATGTTTT TTGCGTCGAGTACATGAGTAAATGTGACGTGTTTAAAAAAGGTCAGATAT TATTTTTGTTATTTTGACTTATCCCTCTTTTGGTCGGGGCTCCTCTGTCC CCTGATGCGGCTCATTCCATCAATACTCTTTCAGTGAAGGATTTAGGGCC GAGGCGTCACAGACGATTCTGCACAGTGACCTTAAGAACCACTCCATCCC CCTTGCTGACGTACTCTCCTCCGCCCTTCCCACACAACCATACGCAGACG CCGCACACTGCGTCATTCCTCCCATCGGCGAAGGATTTAATTCCGGGGCG GAGGATGTGGAAGTCCTCATGGATGCCATGCACCACGACCTCGACAACCC CTTCAGCAAATACAACGAGTGGCGTCTCCCCGATTTGCACGCCCTGCATG AACTGGCTTTCGATGTCAATCAATCGAATTTTGGAAATTTAGGCCCGGAA AAGATAAGTCGGTTGATAACTTCGATGATGGTAGGGCTTGCCAAGAGCTG CGGGGTGTTCAGGACAACGTGGGAAGACATGAGTTTTGGCGCGGATGCCT TCCCGCCCAAATCGTACCTGGAAATCGGGAGTGTGTGGCGGTGGCAGCGC TTGTTTCTTCTACCGCTGGCAAGGATAATTGTGTGGCCTATGTATTTATT GGTTTGGGTGGTGATGCGGCCGGTACAATTGATGTGGACGGTGATGACGG GCCCTAATCGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGAG AGAGGAAGAGGAGGAGACGGGACTCAGAAGTCGAAGCGGGCGTGACGATA ACGACAAAGCACAGCGGAATTTAACGGCAAGAATTTATACAAGTAACAAT GGCGCTGCAAAAATTGAAATATTATCGACAACACGACCCATGCACGCGCA AGACTTAAAGAAACTATATATCAAGCTGCACTTATCCACTCATTTGAACA AATACACGGGACTATCTTCAGTTTTCTTCTTCTTTGCGTCCCATTGGCAT ATGCCACGGGCTGCTTGTCGGTCCAGGGCTTGCTGTACACTAGCTATGTC CTCGTCCTTCTCTTTGAATCATTAAACTCTACCTCCCCTCTTACACCCTC CACTTACAAAATATCTTCCCAGTAATCTTCCGCTTCCTCGACCCCTCCTC CTTCCTCTTCCTCCGCTGCCACCTTCTGCTTCCCTCCGCCCCCTCCTTTA CCCTCCCCATCCCCCTCCACCTCTACCCTCCTAATCTGCATCCTGAACAA CTCTGCTATCTGCGCCGCAGTCGTTGCGTCCTCCACCCCCTTATCCTCCC TCACCTTCAAAAAGCGCGGAAACCTCAAACTCATCCCCTTCTGCTTGTCT ACCAACCCCACCCCTGCCTTATGCACCGGGCTTATGGTCAGTTCCGCCCC CCGTATCTCCCAAACCTGACAGGGGTCGAACCATATCGGGCACGTCTCCC CTGTCCTGACGTAACTCTTAGGCGCGTCAATGATCCTCCCCTCACTCTGA TAAAATTTGGTGGTGTCGGCGTACATGGCATCGGTTAATCCCGACATGCA CCGACAGAGGGACTGGAGCTCTTCGGTCTCGGGGTTGTAGCAGGCGAGGA GGATGGGAGAGAACCAACCGGCCTTGCGGCCGTTGCCGTACCTGTAGGAA AGGGAGGGAGGGAGGGAGGGAAAAAGAGGATCGGACGACAAGACAAAGAA GAAAGAAGGGCATGCGCCTAGACTGGAAGAAAAGCGCAGGGACGGGGGAA GAGAGGGATGGAAGGAGAAATGGAGGGAGGGATGGAGGGAGGGATGGAGG GAGGGATGGAGGG back to topprotein sequence of NO11G02990.2 >NO11G02990.2-protein ID=NO11G02990.2-protein|Name=NO11G02990.2|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp MTTSGETTGQKLHPEDRHFIIVGAGPVGLLAAILLVQEIDALQVTIYESR DGLITDLQESYPVGVNPRGARALDRARPDMAIALRKRGVMVDAWKIYAGR RMIAEVPSGLVVGTTRSMINEMLYEEVRKHFRGRIEIKWGHRLKSLDLLE RRLVFDVKQPATDPDLARTYEEVTVEGGGARMLACDGVWSEVRAFAENHV EGFKSQITPWGVQFRLLFSKPGAGALAPYLKPENHYVMSGIYVSIIEGNV WVMGLGIDDGLPAQTRDLLLATESTPTRVAALRAYVTKKAPLAAPFLTEE DLSMYFKRRSFRGAMVKVNRLNLGEWGVLLGGTYRGVGEQEGEMMKRGRG NGFDSMFFASST* back to topmRNA from alignment at chr11:938032..941348+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G02990.2 ID=NO11G02990.2|Name=NO11G02990.2|organism=Nannochloropsis oceanica|type=mRNA|length=3317bp|location=Sequence derived from alignment at chr11:938032..941348+ (Nannochloropsis oceanica) TATTTGCGGGTGTATCCTGTGTCTTGTGTGCATGAGGATGTCGCCACGAT
TTGTGAGCTCAAGAGCCGGTTTGGACACCACCAGCCTGCAAGCCCCTTCT
CACAAATCAGCAGTAAGCTTCCTGCAAGTCCATTCATTGAGCTTCTCACG
CTCTTCATCCCGTCTCCGCTCGTCCATACCCGGCACACACATCCATAGAG
GCCCGGTGCAAACACACAAACGCACGCCATGACGACGTCGGGCGAGACAA
CAGGCCAGAAGTTGCATCCCGAAGACCGGCACTTCATTATTGTGGGGGCG
GGCCCCGTGGGTCTCCTGGCCGCAATCCTTCTGGTCCAAGAGATCGACGC
CCTTCAGGTAAAACACACACGCCTCAAGGATGGCATCACCGTACACTCTT
GTCCAGAAGATAGAGGTGGTATGTCGTTGTTGATGTTAAGCCTTACTCGC
CGAAGAGAGTTTGCATCAACATGGCCCGCCCTCCCGCCCTCCTTGCACCC
TCCTTCAAACCCTTCCTTACGCACATGTATTCCCGCATCACCACATCACA
CACCAAAATAGGTGACAATATACGAATCTCGTGATGGCCTCATTACGGAT
CTGCAAGAGAGCTATCCCGTTGGCGTCAACCCTCGAGGGGCCAGGGCGTT
GGATCGGGCTAGGCCCGACATGGCCATTGCCCTGCGCAAACGGGGCGTCA
TGGTTGATGCCTGGAAGATTTATGCTGGCAGACGGATGATCGCTGAGGTA
CCATCGGGCTTGGTGGTGGGTACTACGCGGAGCATGATTAACGAGATGTT
GTATGAGGAGGTCCGGAAGCATTTTCGAGGACGGATTGAAATCAAGTGGG
GGCATCGCCTCAAGTCCTTGGACTTGCTCGAACGCCGCTTGGTCTTTGAC
GTAAAACAGCCAGCGACGGATCCTGACCTGGCACGGACATATGAGGAAGT
GACGGTGGAGGGAGGGGGGGCAAGAATGTTGGCATGCGATGGGGTCTGGA
GCGAGGTGCGTGCGTTTGCAGAGAACCACGTGGAGGGCTTCAAGAGTCAA
ATCACTCCCTGGGGGGTTCAATTTCGACTGCTCTTTTCTAAACCTGGTGC
GGGAGCCTTGGCGCCGTACCTGAAGCCTGAGAATCACTATGTAATGAGCG
GGATCTACGTGTCAATCATTGAGGGCAACGTGTGGGTCATGGGCTTAGGG
ATAGATGATGGTCTTCCTGCCCAAACCCGAGATCTCCTTCTCGCCACGGA
ATCGACGCCTACACGTGTGGCGGCCTTGCGGGCATATGTCACGAAGAAGG
CACCCTTGGCGGCCCCATTCTTGACGGAGGAGGATTTGAGTATGTATTTT
AAGAGGAGGAGCTTTCGCGGAGCGATGGTGAAGGTTAACCGACTTAATCT
TGGGGAGTGGGGCGTGTTGCTGGGTGGTACGTACAGAGGCGTGGGAGAAC
AAGAAGGGGAAATGATGAAGAGGGGGAGGGGCAATGGATTTGATTCCATG
TTTTTTGCGTCGAGTACATGAGTAAATGTGACGTGTTTAAAAAAGGTCAG
ATATTATTTTTGTTATTTTGACTTATCCCTCTTTTGGTCGGGGCTCCTCT
GTCCCCTGATGCGGCTCATTCCATCAATACTCTTTCAGTGAAGGATTTAG
GGCCGAGGCGTCACAGACGATTCTGCACAGTGACCTTAAGAACCACTCCA
TCCCCCTTGCTGACGTACTCTCCTCCGCCCTTCCCACACAACCATACGCA
GACGCCGCACACTGCGTCATTCCTCCCATCGGCGAAGGATTTAATTCCGG
GGCGGAGGATGTGGAAGTCCTCATGGATGCCATGCACCACGACCTCGACA
ACCCCTTCAGCAAATACAACGAGTGGCGTCTCCCCGATTTGCACGCCCTG
CATGAACTGGCTTTCGATGTCAATCAATCGAATTTTGGAAATTTAGGCCC
GGAAAAGATAAGTCGGTTGATAACTTCGATGATGGTAGGGCTTGCCAAGA
GCTGCGGGGTGTTCAGGACAACGTGGGAAGACATGAGTTTTGGCGCGGAT
GCCTTCCCGCCCAAATCGTACCTGGAAATCGGGAGTGTGTGGCGGTGGCA
GCGCTTGTTTCTTCTACCGCTGGCAAGGATAATTGTGTGGCCTATGTATT
TATTGGTTTGGGTGGTGATGCGGCCGGTACAATTGATGTGGACGGTGATG
ACGGGCCCTAATCGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGG
AGAGAGAGGAAGAGGAGGAGACGGGACTCAGAAGTCGAAGCGGGCGTGAC
GATAACGACAAAGCACAGCGGAATTTAACGGCAAGAATTTATACAAGTAA
CAATGGCGCTGCAAAAATTGAAATATTATCGACAACACGACCCATGCACG
CGCAAGACTTAAAGAAACTATATATCAAGCTGCACTTATCCACTCATTTG
AACAAATACACGGGACTATCTTCAGTTTTCTTCTTCTTTGCGTCCCATTG
GCATATGCCACGGGCTGCTTGTCGGTCCAGGGCTTGCTGTACACTAGCTA
TGTCCTCGTCCTTCTCTTTGAATCATTAAACTCTACCTCCCCTCTTACAC
CCTCCACTTACAAAATATCTTCCCAGTAATCTTCCGCTTCCTCGACCCCT
CCTCCTTCCTCTTCCTCCGCTGCCACCTTCTGCTTCCCTCCGCCCCCTCC
TTTACCCTCCCCATCCCCCTCCACCTCTACCCTCCTAATCTGCATCCTGA
ACAACTCTGCTATCTGCGCCGCAGTCGTTGCGTCCTCCACCCCCTTATCC
TCCCTCACCTTCAAAAAGCGCGGAAACCTCAAACTCATCCCCTTCTGCTT
GTCTACCAACCCCACCCCTGCCTTATGCACCGGGCTTATGGTCAGTTCCG
CCCCCCGTATCTCCCAAACCTGACAGGGGTCGAACCATATCGGGCACGTC
TCCCCTGTCCTGACGTAACTCTTAGGCGCGTCAATGATCCTCCCCTCACT
CTGATAAAATTTGGTGGTGTCGGCGTACATGGCATCGGTTAATCCCGACA
TGCACCGACAGAGGGACTGGAGCTCTTCGGTCTCGGGGTTGTAGCAGGCG
AGGAGGATGGGAGAGAACCAACCGGCCTTGCGGCCGTTGCCGTACCTGTA
GGAAAGGGAGGGAGGGAGGGAGGGAAAAAGAGGATCGGACGACAAGACAA
AGAAGAAAGAAGGGCATGCGCCTAGACTGGAAGAAAAGCGCAGGGACGGG
GGAAGAGAGGGATGGAAGGAGAAATGGAGGGAGGGATGGAGGGAGGGATG
GAGGGAGGGATGGAGGG back to topCoding sequence (CDS) from alignment at chr11:938032..941348+ >NO11G02990.2 ID=NO11G02990.2|Name=NO11G02990.2|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr11:938032..941348+ (Nannochloropsis oceanica) ATGACGACGTCGGGCGAGACAACAGGCCAGAAGTTGCATCCCGAAGACCG GCACTTCATTATTGTGGGGGCGGGCCCCGTGGGTCTCCTGGCCGCAATCC TTCTGGTCCAAGAGATCGACGCCCTTCAGGTGACAATATACGAATCTCGT GATGGCCTCATTACGGATCTGCAAGAGAGCTATCCCGTTGGCGTCAACCC TCGAGGGGCCAGGGCGTTGGATCGGGCTAGGCCCGACATGGCCATTGCCC TGCGCAAACGGGGCGTCATGGTTGATGCCTGGAAGATTTATGCTGGCAGA CGGATGATCGCTGAGGTACCATCGGGCTTGGTGGTGGGTACTACGCGGAG CATGATTAACGAGATGTTGTATGAGGAGGTCCGGAAGCATTTTCGAGGAC GGATTGAAATCAAGTGGGGGCATCGCCTCAAGTCCTTGGACTTGCTCGAA CGCCGCTTGGTCTTTGACGTAAAACAGCCAGCGACGGATCCTGACCTGGC ACGGACATATGAGGAAGTGACGGTGGAGGGAGGGGGGGCAAGAATGTTGG CATGCGATGGGGTCTGGAGCGAGGTGCGTGCGTTTGCAGAGAACCACGTG GAGGGCTTCAAGAGTCAAATCACTCCCTGGGGGGTTCAATTTCGACTGCT CTTTTCTAAACCTGGTGCGGGAGCCTTGGCGCCGTACCTGAAGCCTGAGA ATCACTATGTAATGAGCGGGATCTACGTGTCAATCATTGAGGGCAACGTG TGGGTCATGGGCTTAGGGATAGATGATGGTCTTCCTGCCCAAACCCGAGA TCTCCTTCTCGCCACGGAATCGACGCCTACACGTGTGGCGGCCTTGCGGG CATATGTCACGAAGAAGGCACCCTTGGCGGCCCCATTCTTGACGGAGGAG GATTTGAGTATGTATTTTAAGAGGAGGAGCTTTCGCGGAGCGATGGTGAA GGTTAACCGACTTAATCTTGGGGAGTGGGGCGTGTTGCTGGGTGGTACGT ACAGAGGCGTGGGAGAACAAGAAGGGGAAATGATGAAGAGGGGGAGGGGC AATGGATTTGATTCCATGTTTTTTGCGTCGAGTACATGA back to top
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