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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:728380..730851 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G02250.1 vs.
Match: EWM24988.1 (20 kda chaperonin [Nannochloropsis gaditana]) HSP 1 Score: 395.6 bits (1015), Expect = 1.200e-106 Identity = 199/253 (78.66%), Postives = 220/253 (86.96%), Query Frame = 0
Query: 1 MVAKFPMRTCLLASLPLLLQAFLLSS-PQRQTAFSYSHRSAKTITQVHNLDGVDIPGPLNPLANVLLVKVKDAADMSAGGIVLPDQAKEKPTEGEVISAGPGRLHPETAVLMPMPVKPGDKVLYGKFDGMSVAYDGAPHVLIRDEDILLTWTGPKMTVAAVETVRDRILVKVKKAQDKSAGGILLAPSMSKARPTEGEVIKVGPGRIASNGQVADIKIKAGDSVKFKDFAGTEVKLEDENYLVMYSVDVLARW 253
M A +R C+ LP LL AF+L P ++T+FS KT+T+ HNLDG +IPGPL PLANVLLVKVKDA DMSAGGIVLPDQAKEKPTEGEV++AGPGR HPETAVLMPMPVKPG KVLYGKFDGMSV YDGAPHVLIRD+DILLTWTG MT+ AVETVRDRILVKVKKAQ+KSAGGILLAPSM+KARPTEGEVIKVGPGRIAS G+VAD+K+K GD VKFKDFAGTE+K++DENYLVMYSVDVLARW
Sbjct: 1 MPAALALRACVFVCLPFLLGAFVLPLFPGQKTSFSARSSFPKTMTRAHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSMTKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G02250.1 ID=NO11G02250.1|Name=NO11G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=1907bp CCCCACTTCATGTTCCTGAAGTCTGTCGTGGGTGGTCGCGGGGTGGAAAG GATGGAAAGGGATGGTCAGTCGCACGATAAGCGGCTAGGGGCAAGCTTTT GGTGGGGAGGCTATAGCACATGGCACCGTGCACTCCCATCGCCGCAAAAG CCAGCAGTCGACTGTAAACATACATTGGCTTCTCCTCAGGGCAGTCGTCT GTGTAGCCGGCATGTATGTATGGTGGATCAGGCCAAGTTGCAGTGCGCAA GGCAGGCCATTCGTCCATCAACACAGAGAGGGAGTATCTTACGTCTCTAG TTAAGCAAAAGCATGCCAACTCAAATACACAGCCTTCGAGCAAACCCAGA CCACCCAGATACAACCAAGAGATGATGGAGGATAAATGGGTGGTCACAGT TGCGGGTTTTGGAGGTAAGTATGGTATAGAAAAATGCACAAGTTTCTGGA ACTGATTTGAGGTTGGTGTGCTCGCCTCTACGGTCACGGCAGCTCGCCTG CCGCGCCCTCTACCAAGCACAAGCATTCTGCTACTCTTTACGGTGTTTGA AAATCCTCTTCATAACTGCTGATACAATAACGCCAGGTCCATCTACATCT TTAGTGAAAGGCCCGCAGGCCGCCGATACATGACCCCGCACGATCATTGC CGGCCTTCCCCCTCTCATCCTAGTGCAACTCCTCCCGTTCTTACTTCTTG CACAGGAAAATGGTGGCCAAGTTCCCCATGCGCACCTGTCTGCTGGCAAG TCTGCCCCTTCTCCTCCAGGCTTTCTTGCTTTCTTCACCTCAGAGACAAA CGGCCTTCTCCTACTCCCACCGTAGCGCCAAGACCATCACCCAAGTGCAC AACCTTGACGGCGTGGACATCCCTGGCCCTTTGAACCCCCTGGCCAACGT GCTGCTTGTCAAAGTCAAGGATGCCGCCGACATGTCTGCTGGAGGCATTG TGCTGCCCGATCAGGCCAAGGAGAAGCCCACCGAAGGCGAAGTTATTTCA GCAGGTCCAGGGCGATTGCACCCGGAGACGGCTGTCCTTATGCCTATGCC CGTCAAGCCTGGCGACAAAGTCCTCTATGGAAAATTTGACGGCATGTCCG TCGCCTACGACGGAGCCCCCCACGTGCTGATCCGCGATGAGGACATCTTG CTTACCTGGACTGGGCCTAAAATGACTGTTGCTGCTGTTGAGACTGTCCG TGACCGCATCCTAGTTAAGGTCAAGAAGGCACAAGATAAGAGCGCAGGTG GAATCTTGTTGGCCCCCTCCATGAGCAAGGCACGGCCGACGGAGGGGGAG GTTATTAAGGTCGGCCCGGGTAGGATTGCGTCAAATGGGCAGGTTGCTGA CATCAAGATTAAGGCAGGAGATAGTGTGAAATTTAAGGACTTTGCGGGCA CGGAGGTGAAATTGGAGGATGAGAATTACTTGGTCATGTACTCAGTTGAT GTGTTGGCGCGTTGGTAAGCGTGAGGTCGAGGGAGGGGGGAATGAGGGAG GCACATAATATTGAAAGTGGGGGGGGGAGGGGAGAATAATGCTCTAATGT TGCCTGTGTGCACATGATGAGGGAGCATAGAGTTGGATGATGGGATTGAA ATGGAAGGGAGAGGGGGAGCAGGAAACGATGCAGGCCCCGCAGCATTTCC GAGTCGTTCTCGTCGATTTTACATTGGATCAAAGCAAAAACAGGCTTGCA CCGAGAGCCGACAACCCAATCAATCAAGGAAGCAAGCAACAAAACATTAC CACCGATTAAAAAACAGCACGAACAACCAGAACGAAAAGAAAACACAACA GACGATGTTTTATCGATGGTGGGCACTCGCCATGCTCTGCTTGCTTATTT CAATCGATCGACAAGGGGAAAACCGCGGGCGACCTTTGACTGTTGCCGAG ATCGGAC back to topprotein sequence of NO11G02250.1 >NO11G02250.1-protein ID=NO11G02250.1-protein|Name=NO11G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp MVAKFPMRTCLLASLPLLLQAFLLSSPQRQTAFSYSHRSAKTITQVHNLD GVDIPGPLNPLANVLLVKVKDAADMSAGGIVLPDQAKEKPTEGEVISAGP GRLHPETAVLMPMPVKPGDKVLYGKFDGMSVAYDGAPHVLIRDEDILLTW TGPKMTVAAVETVRDRILVKVKKAQDKSAGGILLAPSMSKARPTEGEVIK VGPGRIASNGQVADIKIKAGDSVKFKDFAGTEVKLEDENYLVMYSVDVLA RW* back to topmRNA from alignment at chr11:728380..730851- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G02250.1 ID=NO11G02250.1|Name=NO11G02250.1|organism=Nannochloropsis oceanica|type=mRNA|length=2472bp|location=Sequence derived from alignment at chr11:728380..730851- (Nannochloropsis oceanica) CCCCACTTCATGTTCCTGAAGTCTGTCGTGGGTGGTCGCGGGGTGGAAAG
GATGGAAAGGGATGGTCAGTCGCACGATAAGCGGCTAGGGGCAAGCTTTT
GGTGGGGAGGCTATAGCACATGGCACCGTGCACTCCCATCGCCGCAAAAG
CCAGCAGTCGACTGTAAACATACATTGGCTTCTCCTCAGGGCAGTCGTCT
GTGTAGCCGGCATGTATGTATGGTGGATCAGGCCAAGTTGCAGTGCGCAA
GGCAGGCCATTCGTCCATCAACACAGAGAGGGAGTATCTTACGTCTCTAG
TTAAGCAAAAGCATGCCAACTCAAATACACAGCCTTCGAGCAAACCCAGA
CCACCCAGATACAACCAAGAGATGATGGAGGATAAATGGGTGGTCACAGT
TGCGGGTTTTGGAGGTAAGTATGGTATAGAAAAATGCACAAGTTTCTGGA
ACTGATTTGAGGTTGGTGTGCTCGCCTCTACGGTCACGGCAGCTCGCCTG
CCGCGCCCTCTACCAAGCACAAGCATTCTGCTACTCTTTACGGTGTTTGA
AAATCCTCTTCATAACTGCTGATACAATAACGCCAGGTCCATCTACATCT
TTAGTGAAAGGCCCGCAGGCCGCCGATACATGACCCCGCACGATCATTGC
CGGCCTTCCCCCTCTCATCCTAGTGCAACTCCTCCCGTTCTTACTTCTTG
CACAGGAAAATGGTGGCCAAGTTCCCCATGCGCACCTGTCTGCTGGCAAG
TCTGCCCCTTCTCCTCCAGGCTTTCTTGCTTTCTTCACCTCAGAGACAAA
CGGCCTTCTCCTACTCCCACCGTAGCGCCAAGACCATCACCCAAGGTACG
CAGATACGATCGAAATGGAAAGGAGGAACGCTGAATCCTTGCATGTTGTC
TGTATGCTTACATACTTATTAGCCTGACCTGACCTTTTCACATAATTCAA
AGTGCACAACCTTGACGGCGTGGACATCCCTGGCCCTTTGAACCCCCTGG
CCAACGTGCTGCTTGTCAAAGTCAAGGATGCCGCCGACATGTCTGCTGGA
GGCATTGTGCTGCCCGATCAGGTACATATATACATAATCACATTGATTTA
TAACTGGAGATAGGTATTGAAATCTGGGTAGGACAACAAATTGTACGAAG
GGCTCGTGGCATGCGGTCTAAGACCTGTCTGTTTCCCGCAGCCCCTTACC
ACCTCCATCCGCCTTATCTTCTTCCTTTCCTCCTTCCCAACCGAATTCAA
TAAACCCCTCATTCAGGCCAAGGAGAAGCCCACCGAAGGCGAAGTTATTT
CAGCAGGTCCAGGGCGATTGCACCCGGAGACGGCTGTCCTTATGCCTATG
CCCGTCAAGCCTGGTACGTAAATTAAATTGTTTTAGTGCAGGTGCTGGAT
TGCTTGAAGAGATGAAGTTTGAAAGGGATGATATTGTTGAAGAATGGGAG
GAGGCAGCAGGTGTCAGATTATTTGTTAAGTGTTCGTTTCCTCGTGTGTT
TTGTTTTATGTCTGCACGCGGCAAATTTTAAAGATTGAAAAGGAGGAGAG
ACAGCTCTACTTACCCCCTTAAAATCAACACCTACCCTTGTTCCCTCACT
TCCCCCCCTCCACCTCCAATCACCAGGCGACAAAGTCCTCTATGGAAAAT
TTGACGGCATGTCCGTCGCCTACGACGGAGCCCCCCACGTGCTGATCCGC
GATGAGGACATCTTGCTTACCTGGACTGGGCCTAAAATGACTGTTGCTGC
TGTTGAGACTGTCCGTGACCGCATCCTAGTTAAGGTCAAGAAGGCACAAG
ATAAGAGCGCAGGTGGAATCTTGTTGGCCCCCTCCATGAGCAAGGCACGG
CCGACGGAGGGGGAGGTTATTAAGGTCGGCCCGGGTAGGATTGCGTCAAA
TGGGCAGGTTGCTGACATCAAGATTAAGGCAGGAGATAGTGTGAAATTTA
AGGACTTTGCGGGCACGGAGGTGAAATTGGAGGATGAGAATTACTTGGTC
ATGTACTCAGTTGATGTGTTGGCGCGTTGGTAAGCGTGAGGTCGAGGGAG
GGGGGAATGAGGGAGGCACATAATATTGAAAGTGGGGGGGGGAGGGGAGA
ATAATGCTCTAATGTTGCCTGTGTGCACATGATGAGGGAGCATAGAGTTG
GATGATGGGATTGAAATGGAAGGGAGAGGGGGAGCAGGAAACGATGCAGG
CCCCGCAGCATTTCCGAGTCGTTCTCGTCGATTTTACATTGGATCAAAGC
AAAAACAGGCTTGCACCGAGAGCCGACAACCCAATCAATCAAGGAAGCAA
GCAACAAAACATTACCACCGATTAAAAAACAGCACGAACAACCAGAACGA
AAAGAAAACACAACAGACGATGTTTTATCGATGGTGGGCACTCGCCATGC
TCTGCTTGCTTATTTCAATCGATCGACAAGGGGAAAACCGCGGGCGACCT
TTGACTGTTGCCGAGATCGGAC back to topCoding sequence (CDS) from alignment at chr11:728380..730851- >NO11G02250.1 ID=NO11G02250.1|Name=NO11G02250.1|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at chr11:728380..730851- (Nannochloropsis oceanica) ATGGTGGCCAAGTTCCCCATGCGCACCTGTCTGCTGGCAAGTCTGCCCCT TCTCCTCCAGGCTTTCTTGCTTTCTTCACCTCAGAGACAAACGGCCTTCT CCTACTCCCACCGTAGCGCCAAGACCATCACCCAAGTGCACAACCTTGAC GGCGTGGACATCCCTGGCCCTTTGAACCCCCTGGCCAACGTGCTGCTTGT CAAAGTCAAGGATGCCGCCGACATGTCTGCTGGAGGCATTGTGCTGCCCG ATCAGGCCAAGGAGAAGCCCACCGAAGGCGAAGTTATTTCAGCAGGTCCA GGGCGATTGCACCCGGAGACGGCTGTCCTTATGCCTATGCCCGTCAAGCC TGGCGACAAAGTCCTCTATGGAAAATTTGACGGCATGTCCGTCGCCTACG ACGGAGCCCCCCACGTGCTGATCCGCGATGAGGACATCTTGCTTACCTGG ACTGGGCCTAAAATGACTGTTGCTGCTGTTGAGACTGTCCGTGACCGCAT CCTAGTTAAGGTCAAGAAGGCACAAGATAAGAGCGCAGGTGGAATCTTGT TGGCCCCCTCCATGAGCAAGGCACGGCCGACGGAGGGGGAGGTTATTAAG GTCGGCCCGGGTAGGATTGCGTCAAATGGGCAGGTTGCTGACATCAAGAT TAAGGCAGGAGATAGTGTGAAATTTAAGGACTTTGCGGGCACGGAGGTGA AATTGGAGGATGAGAATTACTTGGTCATGTACTCAGTTGATGTGTTGGCG CGTTGGTAA back to top
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