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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:646776..648299 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G02020.1 vs.
Match: XP_005852493.1 (H/ACA ribonucleoprotein complex subunit 1, partial [Nannochloropsis gaditana CCMP526]; EKU23341.1 H/ACA ribonucleoprotein complex subunit 1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 241.1 bits (614), Expect = 3.100e-60 Identity = 133/149 (89.26%), Postives = 140/149 (93.96%), Query Frame = 0
Query: 1 MRPPMHRGGGRGPPGRGGGGFRGGRGGGGGGRYGPGRGYDEGPPEQVVEAGSFMHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDSGVSAKSFKPDDKVYIGTDKLLPLARFTSSGGGGGRGGGRGGGR 150
MRPPMHRGGGRGPPGRGGG FRGGRGGGG R+G GRGYDEGPPEQVVEAG+F+HEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPD+GVSAKSFK +DK+YIGTDKLLPL+RFT GGGGG G GRGGGR
Sbjct: 1 MRPPMHRGGGRGPPGRGGG-FRGGRGGGG--RFGSGRGYDEGPPEQVVEAGAFVHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGGGGGG-GRGRGGGR 145
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G02020.1 ID=NO11G02020.1|Name=NO11G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp CTGTGAATTGTGTGCGTTGTTGCGTGTGTTGGAAACGGTGAGACTTCGTG AGAATTTTAAGTAGACTCACGCCAATGCTCTTGGAGGGTGAAGGGTCGCT CAAGTGCGTGTTTGTATCACGCAAAAGGGGGAGGAATAAGAAGCAATGCG GGCCATGTGCATTGCTTGGTGGAGGAAGGTCTCCACTGGCAAGTGATCGC CGTCTTATGCATCAAACCCCTTAAGCCTAGTAAACACAACGGGCATCGGG CTCATCACCATGGTACATACAGGCACAAATATCTGGAGACTGCCGTGGGA TGGTCATTGCGCTTACTTTTGGTTTCTTGTTGGTAGCTTGCATCGAAACC TTCCCAACCACTCTGCACCCACTCCCTCTCTTCCTTCATTCATCAAAATA AGGATACCAACACCCTTTGACCCACCCTTCACCTTCCAGGGCACACAATG CGACCCCCCATGCATCGGGGTGGTGGTCGTGGACCTCCGGGGCGCGGCGG TGGAGGTTTCCGGGGCGGACGAGGCGGTGGCGGCGGTGGACGTTATGGTC CCGGTCGAGGCTATGATGAGGGCCCTCCGGAGCAAGTGGTGGAGGCCGGG TCGTTCATGCACGAGGTTGAGGGCGAGATGCTCATCAAGCTGACCAATGA AAACATTCCTTATTTCAACGCCGGGATTTTTTTGGAAAACAAGACGCGGG TGGGGAAGGTGGAGGAGGTATTGGGGCCCATTAATCAGGTGTATTTCACT GTTAAACCGGACTCTGGCGTGTCTGCCAAATCTTTCAAGCCTGATGACAA GGTCTACATTGGCACCGATAAACTCTTGCCCCTTGCCCGCTTTACAAGCA GTGGTGGTGGAGGAGGAAGAGGAGGCGGACGAGGAGGAGGACGAGGAGGA GGACGAGGTGGGGGAAGGGGGGGGGTTGGCGCGGCGCGTGGTGGCGGTTT CGGGGGAAGGGGAGGAGGGAGGGGGTTCGGAGGAGGAAGGAGCTTTGGAG GGGGAGGTAGGGGAGGAGGGTTTTCATCACGGGGACGGGGGCCGCCGCGA GGTGGAGGGTTTAGGGGAGGCGGGGGAAGGGGTCGGTTTTAAGCGAGAAA AAGGATGGTATTTATGTGTGTATGTGTGCGTGAGTGTACGCAGCCGAGTG AGGAGGCGTGACAAGCCAGAGAGAAATGAGATACAGGGATTGAGAAAATG AAGGGGAAAAGAGAGTGTGTGCATGATGCAGCTTGTGGCCTCCGTGTATT TAAAGAAGCATGACCCCACAAAAAGACATGCCAAAAAAATGAAGTAAAAC GAGCAGGATACTTAAAAACTGCCTTGGTGTGACGCCACATTATTCTTAAG AATTTACAG back to topprotein sequence of NO11G02020.1 >NO11G02020.1-protein ID=NO11G02020.1-protein|Name=NO11G02020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp MRPPMHRGGGRGPPGRGGGGFRGGRGGGGGGRYGPGRGYDEGPPEQVVEA GSFMHEVEGEMLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYF TVKPDSGVSAKSFKPDDKVYIGTDKLLPLARFTSSGGGGGRGGGRGGGRG GGRGGGRGGVGAARGGGFGGRGGGRGFGGGRSFGGGGRGGGFSSRGRGPP RGGGFRGGGGRGRF* back to topmRNA from alignment at chr11:646776..648299+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G02020.1 ID=NO11G02020.1|Name=NO11G02020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1524bp|location=Sequence derived from alignment at chr11:646776..648299+ (Nannochloropsis oceanica) CTGTGAATTGTGTGCGTTGTTGCGTGTGTTGGAAACGGTGAGACTTCGTG
AGAATTTTAAGTAGACTCACGCCAATGCTCTTGGAGGGTGAAGGGTCGCT
CAAGTGCGTGTTTGTATCACGCAAAAGGGGGAGGAATAAGAAGCAATGCG
GGCCATGTGCATTGCTTGGTGGAGGAAGGTCTCCACTGGCAAGTGATCGC
CGTCTTATGCATCAAACCCCTTAAGCCTAGTAAACACAACGGGCATCGGG
CTCATCACCATGGTACATACAGGCACAAATATCTGGAGACTGCCGTGGGA
TGGTCATTGCGCTTACTTTTGGTTTCTTGTTGGTAGCTTGCATCGAAACC
TTCCCAACCACTCTGCACCCACTCCCTCTCTTCCTTCATTCATCAAAATA
AGGATACCAACACCCTTTGACCCACCCTTCACCTTCCAGGGCACACAATG
CGACCCCCCATGCATCGGGGTGGTGGTCGTGGACCTCCGGGGCGCGGCGG
TGGAGGTTTCCGGGGCGGACGAGGTAAGCTATTTAATTGTCAACCTACCC
CCATCCCCCTGCCCCTCCCCCATCCCTCTTCCCCTATCCTCATCCCCCTC
CTTCTATCCCCCTTTCCTTCCCCTTCTCATCTCTTTTTCTGGCTTCCTCT
ACCCCATCTCTTTTTTTTGGCTTCCTCTACACCAATAGGCGGTGGCGGCG
GTGGACGTTATGGTCCCGGTCGAGGCTATGATGAGGGCCCTCCGGAGCAA
GTGGTGGAGGCCGGGTCGTTCATGCACGAGGTTGAGGGCGAGATGCTCAT
CAAGCTGACCAATGAAAACATTCCTTATTTCAACGCCGGGATTTTTTTGG
AAAACAAGACGCGGGTGGGGAAGGTGGAGGAGGTATTGGGGCCCATTAAT
CAGGTGTATTTCACTGTTAAACCGGACTCTGGCGTGTCTGCCAAATCTTT
CAAGCCTGATGACAAGGTCTACATTGGCACCGATAAACTCTTGCCCCTTG
CCCGCTTTACAAGCAGTGGTGGTGGAGGAGGAAGAGGAGGCGGACGAGGA
GGAGGACGAGGAGGAGGACGAGGTGGGGGAAGGGGGGGGGTTGGCGCGGC
GCGTGGTGGCGGTTTCGGGGGAAGGGGAGGAGGGAGGGGGTTCGGAGGAG
GAAGGAGCTTTGGAGGGGGAGGTAGGGGAGGAGGGTTTTCATCACGGGGA
CGGGGGCCGCCGCGAGGTGGAGGGTTTAGGGGAGGCGGGGGAAGGGGTCG
GTTTTAAGCGAGAAAAAGGATGGTATTTATGTGTGTATGTGTGCGTGAGT
GTACGCAGCCGAGTGAGGAGGCGTGACAAGCCAGAGAGAAATGAGATACA
GGGATTGAGAAAATGAAGGGGAAAAGAGAGTGTGTGCATGATGCAGCTTG
TGGCCTCCGTGTATTTAAAGAAGCATGACCCCACAAAAAGACATGCCAAA
AAAATGAAGTAAAACGAGCAGGATACTTAAAAACTGCCTTGGTGTGACGC
CACATTATTCTTAAGAATTTACAG back to topCoding sequence (CDS) from alignment at chr11:646776..648299+ >NO11G02020.1 ID=NO11G02020.1|Name=NO11G02020.1|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at chr11:646776..648299+ (Nannochloropsis oceanica) ATGCGACCCCCCATGCATCGGGGTGGTGGTCGTGGACCTCCGGGGCGCGG CGGTGGAGGTTTCCGGGGCGGACGAGGCGGTGGCGGCGGTGGACGTTATG GTCCCGGTCGAGGCTATGATGAGGGCCCTCCGGAGCAAGTGGTGGAGGCC GGGTCGTTCATGCACGAGGTTGAGGGCGAGATGCTCATCAAGCTGACCAA TGAAAACATTCCTTATTTCAACGCCGGGATTTTTTTGGAAAACAAGACGC GGGTGGGGAAGGTGGAGGAGGTATTGGGGCCCATTAATCAGGTGTATTTC ACTGTTAAACCGGACTCTGGCGTGTCTGCCAAATCTTTCAAGCCTGATGA CAAGGTCTACATTGGCACCGATAAACTCTTGCCCCTTGCCCGCTTTACAA GCAGTGGTGGTGGAGGAGGAAGAGGAGGCGGACGAGGAGGAGGACGAGGA GGAGGACGAGGTGGGGGAAGGGGGGGGGTTGGCGCGGCGCGTGGTGGCGG TTTCGGGGGAAGGGGAGGAGGGAGGGGGTTCGGAGGAGGAAGGAGCTTTG GAGGGGGAGGTAGGGGAGGAGGGTTTTCATCACGGGGACGGGGGCCGCCG CGAGGTGGAGGGTTTAGGGGAGGCGGGGGAAGGGGTCGGTTTTAA back to top
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