NO11G01930.1, NO11G01930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01930.1
Unique NameNO11G01930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1083
Alignment locationchr11:629907..630989 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:629907..630989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01930.1 vs.
Match: EWM25016.1 (putative cytosolic iron-sulfur protein assembly protein ciao1 [Nannochloropsis gaditana])

HSP 1 Score: 624.4 bits (1609), Expect = 2.200e-175
Identity = 289/367 (78.75%), Postives = 316/367 (86.10%), Query Frame = 0 
Query:    1 MSLKRRAVLAGHTDRVWHVAWSPCGKYLASCGGDRAVRVWGAPTSQQGSNADPAADA---TQAPAVPVE----WRLLATLEDGQTRTVRCCEWSPCGRLLAAVSFDATCVIWELQPAGGRAAGEMEWELTASVEGHEHEAKSVAWNRGGTLLATCSRDKSVWIWECLQDNDFECLSVLHGHEQDVKFVRFHPREDVLFSASYDDTLKVWQEEDDDWACVATLKGHTSTVWGLSIGSRDDGLVSCSDDGSLIIWKAANGEGNYDKWRIVSKLEGQQNKATVYSVDWSRESGAIASGGADDSIRVFAEDLEQPQGWALDSPSFVCEAHVEKAHEADVNCVRWNPVKPWLLASAGDDQVVSVWEFRRSGE 361
            MSLKR +VL GHTDRVWHV+WSPCG+YLASCGGDRA+RVWGAPT   G   D   D     +  A   E    WRLLATL DGQTRTVRCCEWSPCG +LAAVSFD+TCVIWELQP+  +A  EMEWEL ASVEGHEHEAK VAWNRGGTLLATCSRDKSVWIWECLQDNDFECLSVLHGH+QDVKFVRFHPREDVLFSASYDDTLKVW+EE+DDWACV+TLKGHTSTVWGLSIGSRDDG+VSCSDDG+LI+WKAA G G YDKWR +++LE    KATVYSVDWSRESGAIASGGADD+IR++ ED+E PQGWALD+PSFVCEA V  AH+ADVNCVRWNPV+P LLASAGDDQ V +W FRR GE
Sbjct:    1 MSLKRLSVLTGHTDRVWHVSWSPCGRYLASCGGDRAIRVWGAPTLSSGPRTDQDGDKDDRNEEEAGQEEGGGTWRLLATLGDGQTRTVRCCEWSPCGNMLAAVSFDSTCVIWELQPSRAQAGREMEWELAASVEGHEHEAKCVAWNRGGTLLATCSRDKSVWIWECLQDNDFECLSVLHGHDQDVKFVRFHPREDVLFSASYDDTLKVWEEEEDDWACVSTLKGHTSTVWGLSIGSRDDGMVSCSDDGTLIVWKAAGGAGRYDKWRQLTRLEA-PGKATVYSVDWSRESGAIASGGADDAIRIYVEDVEDPQGWALDTPSFVCEADVPGAHDADVNCVRWNPVRPDLLASAGDDQAVRIWSFRRRGE 366
The following BLAST results are available for this feature:
BLAST of NO11G01930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25016.12.200e-17578.75putative cytosolic iron-sulfur protein assembly pr... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01930NO11G01930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01930.1NO11G01930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01930.1.cds1NO11G01930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01930.1 ID=NO11G01930.1|Name=NO11G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp
ATGTCCCTAAAGCGACGAGCCGTCCTTGCAGGACACACGGACCGCGTATG
GCACGTAGCATGGAGTCCGTGCGGCAAGTATTTGGCTTCTTGCGGGGGCG
ACAGGGCAGTTCGCGTTTGGGGGGCGCCGACCTCGCAGCAGGGCTCCAAC
GCTGACCCCGCTGCAGATGCCACTCAAGCACCAGCCGTACCCGTGGAGTG
GCGGCTTCTCGCTACGTTGGAAGATGGACAGACGCGTACGGTACGGTGCT
GTGAGTGGTCGCCGTGTGGGAGGCTGCTGGCGGCCGTGAGCTTTGATGCC
ACGTGCGTTATTTGGGAGCTGCAACCGGCGGGAGGCCGGGCGGCGGGGGA
GATGGAATGGGAGCTGACGGCCTCGGTGGAAGGACATGAGCACGAAGCGA
AATCAGTGGCATGGAATAGGGGTGGGACATTGTTGGCGACGTGCTCCCGG
GATAAAAGCGTGTGGATTTGGGAGTGTTTGCAGGATAATGATTTTGAGTG
CTTAAGTGTGTTGCATGGGCATGAGCAGGACGTGAAATTCGTCAGGTTCC
ATCCACGGGAAGATGTGTTGTTCTCGGCCAGCTATGACGATACGTTGAAG
GTGTGGCAAGAGGAAGATGATGATTGGGCGTGTGTTGCTACATTAAAAGG
GCATACGTCCACGGTCTGGGGGTTATCAATCGGAAGTAGGGACGATGGTT
TGGTGTCATGTAGTGATGACGGGAGCTTGATCATATGGAAGGCTGCAAAT
GGAGAGGGGAATTATGACAAATGGCGAATTGTCTCGAAGTTGGAGGGGCA
GCAGAATAAGGCGACTGTTTACAGTGTAGATTGGTCAAGGGAGAGTGGGG
CGATAGCGTCGGGGGGGGCGGATGACTCGATCAGGGTTTTCGCTGAAGAT
TTGGAGCAGCCACAGGGATGGGCGTTGGACTCGCCGAGTTTTGTGTGTGA
GGCGCATGTGGAGAAGGCGCACGAAGCGGACGTAAATTGCGTGAGGTGGA
ATCCGGTAAAACCTTGGCTGTTGGCGTCGGCGGGGGACGACCAGGTAGTA
AGTGTGTGGGAATTCAGGAGGAGTGGGGAATAG
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protein sequence of NO11G01930.1

>NO11G01930.1-protein ID=NO11G01930.1-protein|Name=NO11G01930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MSLKRRAVLAGHTDRVWHVAWSPCGKYLASCGGDRAVRVWGAPTSQQGSN
ADPAADATQAPAVPVEWRLLATLEDGQTRTVRCCEWSPCGRLLAAVSFDA
TCVIWELQPAGGRAAGEMEWELTASVEGHEHEAKSVAWNRGGTLLATCSR
DKSVWIWECLQDNDFECLSVLHGHEQDVKFVRFHPREDVLFSASYDDTLK
VWQEEDDDWACVATLKGHTSTVWGLSIGSRDDGLVSCSDDGSLIIWKAAN
GEGNYDKWRIVSKLEGQQNKATVYSVDWSRESGAIASGGADDSIRVFAED
LEQPQGWALDSPSFVCEAHVEKAHEADVNCVRWNPVKPWLLASAGDDQVV
SVWEFRRSGE*
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mRNA from alignment at chr11:629907..630989-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01930.1 ID=NO11G01930.1|Name=NO11G01930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp|location=Sequence derived from alignment at chr11:629907..630989- (Nannochloropsis oceanica)
ATGTCCCTAAAGCGACGAGCCGTCCTTGCAGGACACACGGACCGCGTATG
GCACGTAGCATGGAGTCCGTGCGGCAAGTATTTGGCTTCTTGCGGGGGCG
ACAGGGCAGTTCGCGTTTGGGGGGCGCCGACCTCGCAGCAGGGCTCCAAC
GCTGACCCCGCTGCAGATGCCACTCAAGCACCAGCCGTACCCGTGGAGTG
GCGGCTTCTCGCTACGTTGGAAGATGGACAGACGCGTACGGTACGGTGCT
GTGAGTGGTCGCCGTGTGGGAGGCTGCTGGCGGCCGTGAGCTTTGATGCC
ACGTGCGTTATTTGGGAGCTGCAACCGGCGGGAGGCCGGGCGGCGGGGGA
GATGGAATGGGAGCTGACGGCCTCGGTGGAAGGACATGAGCACGAAGCGA
AATCAGTGGCATGGAATAGGGGTGGGACATTGTTGGCGACGTGCTCCCGG
GATAAAAGCGTGTGGATTTGGGAGTGTTTGCAGGATAATGATTTTGAGTG
CTTAAGTGTGTTGCATGGGCATGAGCAGGACGTGAAATTCGTCAGGTTCC
ATCCACGGGAAGATGTGTTGTTCTCGGCCAGCTATGACGATACGTTGAAG
GTGTGGCAAGAGGAAGATGATGATTGGGCGTGTGTTGCTACATTAAAAGG
GCATACGTCCACGGTCTGGGGGTTATCAATCGGAAGTAGGGACGATGGTT
TGGTGTCATGTAGTGATGACGGGAGCTTGATCATATGGAAGGCTGCAAAT
GGAGAGGGGAATTATGACAAATGGCGAATTGTCTCGAAGTTGGAGGGGCA
GCAGAATAAGGCGACTGTTTACAGTGTAGATTGGTCAAGGGAGAGTGGGG
CGATAGCGTCGGGGGGGGCGGATGACTCGATCAGGGTTTTCGCTGAAGAT
TTGGAGCAGCCACAGGGATGGGCGTTGGACTCGCCGAGTTTTGTGTGTGA
GGCGCATGTGGAGAAGGCGCACGAAGCGGACGTAAATTGCGTGAGGTGGA
ATCCGGTAAAACCTTGGCTGTTGGCGTCGGCGGGGGACGACCAGGTAGTA
AGTGTGTGGGAATTCAGGAGGAGTGGGGAATAG
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Coding sequence (CDS) from alignment at chr11:629907..630989-

>NO11G01930.1 ID=NO11G01930.1|Name=NO11G01930.1|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at chr11:629907..630989- (Nannochloropsis oceanica)
ATGTCCCTAAAGCGACGAGCCGTCCTTGCAGGACACACGGACCGCGTATG
GCACGTAGCATGGAGTCCGTGCGGCAAGTATTTGGCTTCTTGCGGGGGCG
ACAGGGCAGTTCGCGTTTGGGGGGCGCCGACCTCGCAGCAGGGCTCCAAC
GCTGACCCCGCTGCAGATGCCACTCAAGCACCAGCCGTACCCGTGGAGTG
GCGGCTTCTCGCTACGTTGGAAGATGGACAGACGCGTACGGTACGGTGCT
GTGAGTGGTCGCCGTGTGGGAGGCTGCTGGCGGCCGTGAGCTTTGATGCC
ACGTGCGTTATTTGGGAGCTGCAACCGGCGGGAGGCCGGGCGGCGGGGGA
GATGGAATGGGAGCTGACGGCCTCGGTGGAAGGACATGAGCACGAAGCGA
AATCAGTGGCATGGAATAGGGGTGGGACATTGTTGGCGACGTGCTCCCGG
GATAAAAGCGTGTGGATTTGGGAGTGTTTGCAGGATAATGATTTTGAGTG
CTTAAGTGTGTTGCATGGGCATGAGCAGGACGTGAAATTCGTCAGGTTCC
ATCCACGGGAAGATGTGTTGTTCTCGGCCAGCTATGACGATACGTTGAAG
GTGTGGCAAGAGGAAGATGATGATTGGGCGTGTGTTGCTACATTAAAAGG
GCATACGTCCACGGTCTGGGGGTTATCAATCGGAAGTAGGGACGATGGTT
TGGTGTCATGTAGTGATGACGGGAGCTTGATCATATGGAAGGCTGCAAAT
GGAGAGGGGAATTATGACAAATGGCGAATTGTCTCGAAGTTGGAGGGGCA
GCAGAATAAGGCGACTGTTTACAGTGTAGATTGGTCAAGGGAGAGTGGGG
CGATAGCGTCGGGGGGGGCGGATGACTCGATCAGGGTTTTCGCTGAAGAT
TTGGAGCAGCCACAGGGATGGGCGTTGGACTCGCCGAGTTTTGTGTGTGA
GGCGCATGTGGAGAAGGCGCACGAAGCGGACGTAAATTGCGTGAGGTGGA
ATCCGGTAAAACCTTGGCTGTTGGCGTCGGCGGGGGACGACCAGGTAGTA
AGTGTGTGGGAATTCAGGAGGAGTGGGGAATAG
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Synonyms
Publications