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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:623536..625820 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01900.1 vs.
Match: EWM25027.1 (chloroplast sedoheptulose- -bisphosphatase [Nannochloropsis gaditana]) HSP 1 Score: 674.9 bits (1740), Expect = 1.500e-190 Identity = 330/375 (88.00%), Postives = 358/375 (95.47%), Query Frame = 0
Query: 1 MKGAILLALVAPTLAFVPVKPVVPMAKTQSRSRAQTIMQMDPSVMPGLASTPGQPTVESWLMDNADKKLSKAVMGIFSACKEIAYKIRTASCDKMACFNEFGDEQLAIDILANNVLFQNLKDSGVVATASSEETPTEDPMGGEGFSVAFDPLDGSSIIDTNFAVGTIFGVWPGSRLTGITGRQLAASGIAVYGPRTTITFAIDGVDGAHEFLLVDDFTARHGQWIKTNTFTSIGEGKLFAPGNLRAIADNPGYNAMHSYWLENKYQLRYTGGMVPDVNQIMVKGKGVFVNPESPSAKAKLRLLYEVAPIGYMIEKAGGASSYGAGSVLDLNIYKTEDRTQVAYGSKDEVKRFEDMVGIKYASSHPDIVSQNAAHA 376
MK ++LLALVAPT+AF+P+KPVVPMAK Q+R + QT MQ D MPGLAS PGQPT+ESWL+DN++KKLSKAV+G+FSACKEIAYKIRTASCDKMACFNEFGDEQLAIDILANNVLFQNLKDSGVVATASSEETPTEDPMGGEG+SVAFDPLDGSSIIDTNFAVGTIFGVWPGSRLTGITGR+LAASGIAVYGPRTTITFAIDGV+GAHEFLLVDDFTARHGQWIKTNTFTSIGEGKL+APGNLRA DNPGY+A+H YWL+NKYQLRYTGGMVPDVNQIMVKGKGVFVNPESPSAKAKLRLLYEVAPIGY+IEKAGGASSYGAGSVLDL +YKTEDRTQVAYGSKDEVKRFE+MVG K+A++HPD ++NAAHA
Sbjct: 1 MKCSLLLALVAPTMAFIPMKPVVPMAKAQARVKGQTRMQAD---MPGLASAPGQPTIESWLLDNSEKKLSKAVLGLFSACKEIAYKIRTASCDKMACFNEFGDEQLAIDILANNVLFQNLKDSGVVATASSEETPTEDPMGGEGYSVAFDPLDGSSIIDTNFAVGTIFGVWPGSRLTGITGRELAASGIAVYGPRTTITFAIDGVEGAHEFLLVDDFTARHGQWIKTNTFTSIGEGKLYAPGNLRATNDNPGYDALHKYWLQNKYQLRYTGGMVPDVNQIMVKGKGVFVNPESPSAKAKLRLLYEVAPIGYVIEKAGGASSYGAGSVLDLKVYKTEDRTQVAYGSKDEVKRFEEMVGTKFATAHPDTAAKNAAHA 372
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01900.1 ID=NO11G01900.1|Name=NO11G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2163bp TCGCTGCAGGAGTTGTAGAGGGCCGATTACAAGGTCCTGCCTGGCTTGGT GACAAGGTTGTGTATGTTTATGTGAGTGTACCAGTGGCCTGCTTTACATC AGGGCGTGGGGGACGTGTTTGCCTTGTGCGTGGCGCGTTTGGACAGGGTC GGCTTCAGTTTGCCCGTTGTTGCAGTCCACAACCCTCCCTTGCTTCACCT CTGCAGCAGATCTTCGGCCACACGCATGCATGCCTTGCCCTTCATGTTTG TGTCACGGGCATGCTTGTTAAATGGCGGCGCCGTGGATTTCGGGTTGCGA GAGTGTCAGTGGTGGTGTTCGACTGTCCAATCACTCACTTTGGCTCGTGG TTGTAGGTCTCTGAAAACACTCCAGATGCTGGGCTCTTGTCTTCGCCCAC GTCGACGTTCCTCCCGATCTATTATCGCGACTCTTTTCTATCCACATTAG CACATGGTACAAACCCTAAGTCGTGATTGCGCCGTCAGGGACAACACCAA GAGACTTCGCCGTCATGCCTGCCTACCCTGCCCAATTTATGCTCAGCCCT TTGGCCACAGGGACCGCTTACTTGGCTCCAACCAAACATCAACCCTCCCT CCCCCCCTTCTCTCCCATCTCAAAATAACATAGACAGAGTTATAAATTTA CCATGAAGGGTGCTATCCTCCTCGCCTTGGTCGCTCCGACCTTGGCTTTC GTCCCCGTCAAGCCTGTTGTGCCCATGGCCAAGACCCAGTCCCGTAGCAG GGCGCAGACCATCATGCAGATGGATCCCTCGGTCATGCCCGGCCTTGCCT CCACCCCGGGTCAACCCACAGTTGAGAGCTGGTTGATGGACAACGCCGAC AAGAAGCTTTCCAAGGCCGTGATGGGCATCTTCTCCGCCTGCAAAGAGAT CGCCTACAAGATCCGCACGGCGTCTTGTGACAAAATGGCGTGCTTCAACG AGTTCGGTGACGAGCAGCTTGCCATTGACATCCTGGCCAACAACGTCCTC TTCCAAAACCTCAAGGACTCCGGGGTGGTCGCCACGGCCTCCTCGGAGGA AACCCCTACGGAGGATCCGATGGGGGGTGAGGGCTTCTCTGTGGCTTTTG ATCCCCTCGATGGCTCTTCCATTATCGACACTAACTTTGCCGTGGGCACC ATTTTCGGCGTGTGGCCCGGCTCCCGCCTGACTGGTATCACTGGACGACA GCTCGCTGCATCCGGGATTGCTGTCTATGGACCCCGTACGACCATCACCT TTGCGATTGATGGCGTGGATGGTGCGCACGAGTTTTTGCTGGTGGATGAC TTCACTGCCCGCCACGGGCAGTGGATCAAGACCAACACATTTACCAGCAT TGGGGAGGGCAAGCTTTTCGCCCCCGGGAACTTGCGGGCCATTGCCGATA ACCCCGGCTACAACGCCATGCACTCGTACTGGTTGGAGAACAAATACCAG CTTCGCTACACGGGCGGCATGGTGCCCGACGTGAACCAGATCATGGTCAA GGGCAAGGGCGTGTTCGTCAACCCCGAGTCGCCCTCTGCCAAGGCCAAGC TCCGCTTGCTGTACGAGGTGGCACCCATTGGATACATGATTGAGAAGGCC GGCGGTGCATCTTCTTATGGCGCGGGTTCGGTGCTGGACTTGAACATTTA CAAGACGGAGGACCGCACCCAGGTGGCATACGGAAGCAAGGATGAGGTGA AGCGCTTTGAGGACATGGTGGGGATTAAGTATGCCTCCTCCCACCCGGAC ATCGTTTCCCAGAATGCGGCGCACGCGTAAATCACGTCGAAAGGATGGAT GGATGCGAGAAGAATGAGAAGTGACGATGCAATCGGAGGAGGGGGGTTGG GGCTGGAGGGAGAGAGAGGGCAAGGTGGGGATGGGCGGATGGGGCTCTCG TCACATGGCTCTCGGCATGCTGACGTGCAGTAGGGGTCAAGGGAACGATG TGTGTTAGAGGTGCATGAGTGTATGTGAGTATAATCCTCATGTTCCTCGC GTTGTTTCTCACTATATGTCATACTTGTCGTTGTTTTTCCAGACCCTTTA CTCTTGTTGGTTGGCGTTTTTCTAACTACTGCGGAAGAACCAAGATGGGC AAGAAACCAACCAAAAGAGAGCGAGCTTACTGAGATGCACAAACCTCAAA AGCTGCGTTTTGG back to topprotein sequence of NO11G01900.1 >NO11G01900.1-protein ID=NO11G01900.1-protein|Name=NO11G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp MKGAILLALVAPTLAFVPVKPVVPMAKTQSRSRAQTIMQMDPSVMPGLAS TPGQPTVESWLMDNADKKLSKAVMGIFSACKEIAYKIRTASCDKMACFNE FGDEQLAIDILANNVLFQNLKDSGVVATASSEETPTEDPMGGEGFSVAFD PLDGSSIIDTNFAVGTIFGVWPGSRLTGITGRQLAASGIAVYGPRTTITF AIDGVDGAHEFLLVDDFTARHGQWIKTNTFTSIGEGKLFAPGNLRAIADN PGYNAMHSYWLENKYQLRYTGGMVPDVNQIMVKGKGVFVNPESPSAKAKL RLLYEVAPIGYMIEKAGGASSYGAGSVLDLNIYKTEDRTQVAYGSKDEVK RFEDMVGIKYASSHPDIVSQNAAHA* back to topmRNA from alignment at chr11:623536..625820+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01900.1 ID=NO11G01900.1|Name=NO11G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2285bp|location=Sequence derived from alignment at chr11:623536..625820+ (Nannochloropsis oceanica) TCGCTGCAGGAGTTGTAGAGGGCCGATTACAAGGTCCTGCCTGGCTTGGT
GACAAGGTTGTGTATGTTTATGTGAGTGTACCAGTGGCCTGCTTTACATC
AGGGCGTGGGGGACGTGTTTGCCTTGTGCGTGGCGCGTTTGGACAGGGTC
GGCTTCAGTTTGCCCGTTGTTGCAGTCCACAACCCTCCCTTGCTTCACCT
CTGCAGCAGATCTTCGGCCACACGCATGCATGCCTTGCCCTTCATGTTTG
TGTCACGGGCATGCTTGTTAAATGGCGGCGCCGTGGATTTCGGGTTGCGA
GAGTGTCAGTGGTGGTGTTCGACTGTCCAATCACTCACTTTGGCTCGTGG
TTGTAGGTCTCTGAAAACACTCCAGATGCTGGGCTCTTGTCTTCGCCCAC
GTCGACGTTCCTCCCGATCTATTATCGCGACTCTTTTCTATCCACATTAG
CACATGGTACAAACCCTAAGTCGTGATTGCGCCGTCAGGGACAACACCAA
GAGACTTCGCCGTCATGCCTGCCTACCCTGCCCAATTTATGCTCAGCCCT
TTGGCCACAGGGACCGCTTACTTGGCTCCAACCAAACATCAACCCTCCCT
CCCCCCCTTCTCTCCCATCTCAAAATAACATAGACAGAGTTATAAATTTA
CCATGAAGGGTGCTATCCTCCTCGCCTTGGTCGCTCCGACCTTGGCTTTC
GTCCCCGTCAAGCCTGTTGTGCCCATGGCCAAGACCCAGTCCCGTAGCAG
GGCGCAGACCATCATGCAGATGGATCCCTCGGTCATGCCCGGCCTTGCCT
CCACCCCGGGTCAACCCACAGTTGAGAGCTGGTTGATGGACAACGCCGAC
AAGAAGCTTTGTAAGTACAGAGAGAGGAAAGGAAGGGGATCGATAAAGTG
GCACATTTTATCCTTAACCACCCCGACGCACCAACTCATCCCTACCATCT
TTATTTTCCTCCCCTCCTTACCCTCAAAACAGCCAAGGCCGTGATGGGCA
TCTTCTCCGCCTGCAAAGAGATCGCCTACAAGATCCGCACGGCGTCTTGT
GACAAAATGGCGTGCTTCAACGAGTTCGGTGACGAGCAGCTTGCCATTGA
CATCCTGGCCAACAACGTCCTCTTCCAAAACCTCAAGGACTCCGGGGTGG
TCGCCACGGCCTCCTCGGAGGAAACCCCTACGGAGGATCCGATGGGGGGT
GAGGGCTTCTCTGTGGCTTTTGATCCCCTCGATGGCTCTTCCATTATCGA
CACTAACTTTGCCGTGGGCACCATTTTCGGCGTGTGGCCCGGCTCCCGCC
TGACTGGTATCACTGGACGACAGCTCGCTGCATCCGGGATTGCTGTCTAT
GGACCCCGTACGACCATCACCTTTGCGATTGATGGCGTGGATGGTGCGCA
CGAGTTTTTGCTGGTGGATGACTTCACTGCCCGCCACGGGCAGTGGATCA
AGACCAACACATTTACCAGCATTGGGGAGGGCAAGCTTTTCGCCCCCGGG
AACTTGCGGGCCATTGCCGATAACCCCGGCTACAACGCCATGCACTCGTA
CTGGTTGGAGAACAAATACCAGCTTCGCTACACGGGCGGCATGGTGCCCG
ACGTGAACCAGATCATGGTCAAGGGCAAGGGCGTGTTCGTCAACCCCGAG
TCGCCCTCTGCCAAGGCCAAGCTCCGCTTGCTGTACGAGGTGGCACCCAT
TGGATACATGATTGAGAAGGCCGGCGGTGCATCTTCTTATGGCGCGGGTT
CGGTGCTGGACTTGAACATTTACAAGACGGAGGACCGCACCCAGGTGGCA
TACGGAAGCAAGGATGAGGTGAAGCGCTTTGAGGACATGGTGGGGATTAA
GTATGCCTCCTCCCACCCGGACATCGTTTCCCAGAATGCGGCGCACGCGT
AAATCACGTCGAAAGGATGGATGGATGCGAGAAGAATGAGAAGTGACGAT
GCAATCGGAGGAGGGGGGTTGGGGCTGGAGGGAGAGAGAGGGCAAGGTGG
GGATGGGCGGATGGGGCTCTCGTCACATGGCTCTCGGCATGCTGACGTGC
AGTAGGGGTCAAGGGAACGATGTGTGTTAGAGGTGCATGAGTGTATGTGA
GTATAATCCTCATGTTCCTCGCGTTGTTTCTCACTATATGTCATACTTGT
CGTTGTTTTTCCAGACCCTTTACTCTTGTTGGTTGGCGTTTTTCTAACTA
CTGCGGAAGAACCAAGATGGGCAAGAAACCAACCAAAAGAGAGCGAGCTT
ACTGAGATGCACAAACCTCAAAAGCTGCGTTTTGG back to topCoding sequence (CDS) from alignment at chr11:623536..625820+ >NO11G01900.1 ID=NO11G01900.1|Name=NO11G01900.1|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at chr11:623536..625820+ (Nannochloropsis oceanica) ATGAAGGGTGCTATCCTCCTCGCCTTGGTCGCTCCGACCTTGGCTTTCGT CCCCGTCAAGCCTGTTGTGCCCATGGCCAAGACCCAGTCCCGTAGCAGGG CGCAGACCATCATGCAGATGGATCCCTCGGTCATGCCCGGCCTTGCCTCC ACCCCGGGTCAACCCACAGTTGAGAGCTGGTTGATGGACAACGCCGACAA GAAGCTTTCCAAGGCCGTGATGGGCATCTTCTCCGCCTGCAAAGAGATCG CCTACAAGATCCGCACGGCGTCTTGTGACAAAATGGCGTGCTTCAACGAG TTCGGTGACGAGCAGCTTGCCATTGACATCCTGGCCAACAACGTCCTCTT CCAAAACCTCAAGGACTCCGGGGTGGTCGCCACGGCCTCCTCGGAGGAAA CCCCTACGGAGGATCCGATGGGGGGTGAGGGCTTCTCTGTGGCTTTTGAT CCCCTCGATGGCTCTTCCATTATCGACACTAACTTTGCCGTGGGCACCAT TTTCGGCGTGTGGCCCGGCTCCCGCCTGACTGGTATCACTGGACGACAGC TCGCTGCATCCGGGATTGCTGTCTATGGACCCCGTACGACCATCACCTTT GCGATTGATGGCGTGGATGGTGCGCACGAGTTTTTGCTGGTGGATGACTT CACTGCCCGCCACGGGCAGTGGATCAAGACCAACACATTTACCAGCATTG GGGAGGGCAAGCTTTTCGCCCCCGGGAACTTGCGGGCCATTGCCGATAAC CCCGGCTACAACGCCATGCACTCGTACTGGTTGGAGAACAAATACCAGCT TCGCTACACGGGCGGCATGGTGCCCGACGTGAACCAGATCATGGTCAAGG GCAAGGGCGTGTTCGTCAACCCCGAGTCGCCCTCTGCCAAGGCCAAGCTC CGCTTGCTGTACGAGGTGGCACCCATTGGATACATGATTGAGAAGGCCGG CGGTGCATCTTCTTATGGCGCGGGTTCGGTGCTGGACTTGAACATTTACA AGACGGAGGACCGCACCCAGGTGGCATACGGAAGCAAGGATGAGGTGAAG CGCTTTGAGGACATGGTGGGGATTAAGTATGCCTCCTCCCACCCGGACAT CGTTTCCCAGAATGCGGCGCACGCGTAA back to top
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