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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:422090..423676 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G01170.1 vs.
Match: EWM25118.1 (Lamin Tail domain protein [Nannochloropsis gaditana]) HSP 1 Score: 493.4 bits (1269), Expect = 7.200e-136 Identity = 249/444 (56.08%), Postives = 325/444 (73.20%), Query Frame = 0
Query: 1 MRRLVEIPWLDEHIGTCTSGSDLEPRRRSIFYKLPPYVRNVDLTREVIVVSNPDVTPLDLGGHYLCDK-DNHRFEFEDAYVLAPGADVHVYMCPGKHPVTEEEQPGKLQIVLWQTKDNKPRRREILDSAGDKITLIDANGVEIAALEVTAAPRVEGEEVEEDNGTAGP----EGTKRLYLYSLNLLQIKYAKKFVTFLQGARLAGMVLGFMLVLTNNLPAYVVLELLALLLDLAARYIDPLRHPRSRQRVFALIADRLESASLLVVLMTGVLEEGESYYYAPSPISRVRLGAGMLLVDLLSSWFEVLVESSTRMVMAASDAATPFWKQASKPQAEEAMAVQSGPYRKWLRHYLQRAPWLVTLITGGNHLFLLLAVARLAQAVEGDGQWWITQGLLAADRLFTVVPLPGYMKTCWNVLIPAMCAATVYRVLLVWTELMDLIESKV 440
MRRL+EIPWLDE TS PRRRSI Y+ PPY+ +VD+ RE+I +SNP+ P+DL GH LCDK +HR+EFE+ Y LAPGA++HVY PGK+ V EEE+PG+LQI+LW T++ +PRRRE+L+ GD++TLID NG+EIAALEVT E EE E + G E KRLYLY L +LQ+KYAK VT+LQG+RLA MVL F+ VL N+L +YV+LE+ LD+AARY+DP+R PRSRQRVFAL+ADRL+SASLL VLMTG++E G Y P+P+ RVRLG GMLL+++L+ WFEVLVE STR+ AA+DA P+W+Q P EE ++VQ+GPYRKWLR +L R P L+T TGGNHLFL+LAV RLA A G + + + + A R+ +PLP + + W L+ A+C + +YR +L+W EL+DL+ESK+
Sbjct: 1 MRRLIEIPWLDECDQDGTSARCQNPRRRSILYRSPPYISDVDVKREIITISNPESVPVDLSGHSLCDKGQHHRYEFEEGYTLAPGAELHVYCAPGKYGVEEEERPGELQILLWTTREGRPRRREVLNQEGDRVTLIDQNGMEIAALEVTVNGDDEEEEGEREKRGTGKAERREEIKRLYLYRLEVLQLKYAKSVVTWLQGSRLALMVLAFIFVLLNDLHSYVLLEVGGFALDMAARYLDPVRLPRSRQRVFALVADRLDSASLLAVLMTGLVETGGPLY-GPNPVHRVRLGLGMLLIEVLAFWFEVLVEGSTRL--AAADAVAPYWRQGPAPAGEEEVSVQTGPYRKWLRQHLGRCPALITFATGGNHLFLVLAVVRLAHAQAGGSEGLVVRAVSVASRIMAYLPLPRAIVSNWQFLLIAVCLSAMYRCILIWAELLDLLESKL 441
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G01170.1 ID=NO11G01170.1|Name=NO11G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1587bp ATTACAGGCTGTAATCTTTGCTTCCGTCGCAAGTCCTCATTCCTTGCTCT TCTCACCATCCTTTCAGCCAAGTGGTAGCAGTTTCCTCCTTCACCCACTC ACGCGTCTCGTTCCTCCCTCACGGCGACCAGCTTGTCCTCTTTACACACA ACACGTGATGCGCCGGCTGGTGGAGATTCCATGGCTTGATGAGCATATTG GCACATGCACCTCGGGGAGCGACCTGGAACCGCGGCGCCGGTCCATTTTC TACAAGCTGCCACCCTACGTGCGAAACGTGGACTTGACCCGTGAGGTGAT TGTCGTCTCGAATCCCGACGTCACCCCTTTGGATCTTGGGGGGCACTACT TGTGTGATAAGGATAACCATCGCTTCGAGTTTGAGGATGCTTATGTGCTG GCACCTGGCGCGGACGTGCATGTCTACATGTGTCCAGGCAAGCATCCCGT GACGGAGGAGGAGCAGCCGGGAAAGTTGCAGATTGTGTTATGGCAAACAA AAGACAACAAGCCCCGGCGACGCGAGATACTCGATTCAGCGGGTGACAAG ATCACATTGATAGACGCGAATGGAGTGGAGATTGCCGCGTTGGAAGTGAC GGCAGCGCCGCGAGTCGAGGGCGAGGAGGTAGAAGAGGACAACGGAACCG CAGGGCCAGAAGGCACCAAGCGGCTTTATCTCTACAGTCTTAACTTGCTC CAGATCAAGTACGCCAAGAAATTTGTGACATTTCTGCAAGGTGCACGTCT GGCGGGGATGGTCCTGGGTTTCATGCTCGTGCTTACCAACAACCTGCCTG CCTATGTGGTTCTCGAACTTCTGGCTCTCCTGCTGGACCTCGCGGCGCGG TACATCGATCCTTTGCGTCACCCTCGCAGCAGGCAGCGTGTCTTCGCTTT GATCGCTGATCGCTTGGAATCCGCGAGCCTGCTTGTTGTTCTCATGACGG GCGTCTTGGAGGAAGGCGAAAGTTACTACTACGCGCCTAGCCCGATAAGT CGTGTCCGTCTCGGGGCCGGCATGCTGCTGGTCGACCTTTTGTCGTCCTG GTTCGAAGTCCTTGTGGAGAGCTCCACGCGCATGGTCATGGCAGCCAGTG ATGCCGCAACCCCTTTCTGGAAACAAGCCTCCAAACCCCAAGCTGAAGAA GCAATGGCCGTCCAAAGCGGTCCCTATCGAAAATGGCTCCGACACTACCT ACAACGTGCTCCCTGGCTGGTCACCCTGATCACAGGCGGCAATCACCTGT TCCTCCTCTTGGCCGTAGCCCGGCTTGCACAGGCAGTGGAGGGGGATGGA CAATGGTGGATCACGCAGGGGCTACTTGCCGCTGATCGACTCTTTACCGT TGTACCTCTGCCTGGGTATATGAAGACTTGTTGGAATGTGCTCATCCCTG CGATGTGTGCCGCGACGGTGTATCGCGTGTTGTTGGTGTGGACGGAGTTG ATGGATTTGATTGAAAGCAAGGTGTGATGGAAGGATGGAGGTAAGAATCT CGGTGTGGAGTGCGTAAGAGCTTGGAAGGGGATTTGGAGAATGGAAAGGC TGAGCTGAAAATAGTGCGATCACGAAGTCAGGCAGTG back to topprotein sequence of NO11G01170.1 >NO11G01170.1-protein ID=NO11G01170.1-protein|Name=NO11G01170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp MRRLVEIPWLDEHIGTCTSGSDLEPRRRSIFYKLPPYVRNVDLTREVIVV SNPDVTPLDLGGHYLCDKDNHRFEFEDAYVLAPGADVHVYMCPGKHPVTE EEQPGKLQIVLWQTKDNKPRRREILDSAGDKITLIDANGVEIAALEVTAA PRVEGEEVEEDNGTAGPEGTKRLYLYSLNLLQIKYAKKFVTFLQGARLAG MVLGFMLVLTNNLPAYVVLELLALLLDLAARYIDPLRHPRSRQRVFALIA DRLESASLLVVLMTGVLEEGESYYYAPSPISRVRLGAGMLLVDLLSSWFE VLVESSTRMVMAASDAATPFWKQASKPQAEEAMAVQSGPYRKWLRHYLQR APWLVTLITGGNHLFLLLAVARLAQAVEGDGQWWITQGLLAADRLFTVVP LPGYMKTCWNVLIPAMCAATVYRVLLVWTELMDLIESKV* back to topmRNA from alignment at chr11:422090..423676- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G01170.1 ID=NO11G01170.1|Name=NO11G01170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1587bp|location=Sequence derived from alignment at chr11:422090..423676- (Nannochloropsis oceanica) ATTACAGGCTGTAATCTTTGCTTCCGTCGCAAGTCCTCATTCCTTGCTCT
TCTCACCATCCTTTCAGCCAAGTGGTAGCAGTTTCCTCCTTCACCCACTC
ACGCGTCTCGTTCCTCCCTCACGGCGACCAGCTTGTCCTCTTTACACACA
ACACGTGATGCGCCGGCTGGTGGAGATTCCATGGCTTGATGAGCATATTG
GCACATGCACCTCGGGGAGCGACCTGGAACCGCGGCGCCGGTCCATTTTC
TACAAGCTGCCACCCTACGTGCGAAACGTGGACTTGACCCGTGAGGTGAT
TGTCGTCTCGAATCCCGACGTCACCCCTTTGGATCTTGGGGGGCACTACT
TGTGTGATAAGGATAACCATCGCTTCGAGTTTGAGGATGCTTATGTGCTG
GCACCTGGCGCGGACGTGCATGTCTACATGTGTCCAGGCAAGCATCCCGT
GACGGAGGAGGAGCAGCCGGGAAAGTTGCAGATTGTGTTATGGCAAACAA
AAGACAACAAGCCCCGGCGACGCGAGATACTCGATTCAGCGGGTGACAAG
ATCACATTGATAGACGCGAATGGAGTGGAGATTGCCGCGTTGGAAGTGAC
GGCAGCGCCGCGAGTCGAGGGCGAGGAGGTAGAAGAGGACAACGGAACCG
CAGGGCCAGAAGGCACCAAGCGGCTTTATCTCTACAGTCTTAACTTGCTC
CAGATCAAGTACGCCAAGAAATTTGTGACATTTCTGCAAGGTGCACGTCT
GGCGGGGATGGTCCTGGGTTTCATGCTCGTGCTTACCAACAACCTGCCTG
CCTATGTGGTTCTCGAACTTCTGGCTCTCCTGCTGGACCTCGCGGCGCGG
TACATCGATCCTTTGCGTCACCCTCGCAGCAGGCAGCGTGTCTTCGCTTT
GATCGCTGATCGCTTGGAATCCGCGAGCCTGCTTGTTGTTCTCATGACGG
GCGTCTTGGAGGAAGGCGAAAGTTACTACTACGCGCCTAGCCCGATAAGT
CGTGTCCGTCTCGGGGCCGGCATGCTGCTGGTCGACCTTTTGTCGTCCTG
GTTCGAAGTCCTTGTGGAGAGCTCCACGCGCATGGTCATGGCAGCCAGTG
ATGCCGCAACCCCTTTCTGGAAACAAGCCTCCAAACCCCAAGCTGAAGAA
GCAATGGCCGTCCAAAGCGGTCCCTATCGAAAATGGCTCCGACACTACCT
ACAACGTGCTCCCTGGCTGGTCACCCTGATCACAGGCGGCAATCACCTGT
TCCTCCTCTTGGCCGTAGCCCGGCTTGCACAGGCAGTGGAGGGGGATGGA
CAATGGTGGATCACGCAGGGGCTACTTGCCGCTGATCGACTCTTTACCGT
TGTACCTCTGCCTGGGTATATGAAGACTTGTTGGAATGTGCTCATCCCTG
CGATGTGTGCCGCGACGGTGTATCGCGTGTTGTTGGTGTGGACGGAGTTG
ATGGATTTGATTGAAAGCAAGGTGTGATGGAAGGATGGAGGTAAGAATCT
CGGTGTGGAGTGCGTAAGAGCTTGGAAGGGGATTTGGAGAATGGAAAGGC
TGAGCTGAAAATAGTGCGATCACGAAGTCAGGCAGTG back to topCoding sequence (CDS) from alignment at chr11:422090..423676- >NO11G01170.1 ID=NO11G01170.1|Name=NO11G01170.1|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr11:422090..423676- (Nannochloropsis oceanica) ATGCGCCGGCTGGTGGAGATTCCATGGCTTGATGAGCATATTGGCACATG CACCTCGGGGAGCGACCTGGAACCGCGGCGCCGGTCCATTTTCTACAAGC TGCCACCCTACGTGCGAAACGTGGACTTGACCCGTGAGGTGATTGTCGTC TCGAATCCCGACGTCACCCCTTTGGATCTTGGGGGGCACTACTTGTGTGA TAAGGATAACCATCGCTTCGAGTTTGAGGATGCTTATGTGCTGGCACCTG GCGCGGACGTGCATGTCTACATGTGTCCAGGCAAGCATCCCGTGACGGAG GAGGAGCAGCCGGGAAAGTTGCAGATTGTGTTATGGCAAACAAAAGACAA CAAGCCCCGGCGACGCGAGATACTCGATTCAGCGGGTGACAAGATCACAT TGATAGACGCGAATGGAGTGGAGATTGCCGCGTTGGAAGTGACGGCAGCG CCGCGAGTCGAGGGCGAGGAGGTAGAAGAGGACAACGGAACCGCAGGGCC AGAAGGCACCAAGCGGCTTTATCTCTACAGTCTTAACTTGCTCCAGATCA AGTACGCCAAGAAATTTGTGACATTTCTGCAAGGTGCACGTCTGGCGGGG ATGGTCCTGGGTTTCATGCTCGTGCTTACCAACAACCTGCCTGCCTATGT GGTTCTCGAACTTCTGGCTCTCCTGCTGGACCTCGCGGCGCGGTACATCG ATCCTTTGCGTCACCCTCGCAGCAGGCAGCGTGTCTTCGCTTTGATCGCT GATCGCTTGGAATCCGCGAGCCTGCTTGTTGTTCTCATGACGGGCGTCTT GGAGGAAGGCGAAAGTTACTACTACGCGCCTAGCCCGATAAGTCGTGTCC GTCTCGGGGCCGGCATGCTGCTGGTCGACCTTTTGTCGTCCTGGTTCGAA GTCCTTGTGGAGAGCTCCACGCGCATGGTCATGGCAGCCAGTGATGCCGC AACCCCTTTCTGGAAACAAGCCTCCAAACCCCAAGCTGAAGAAGCAATGG CCGTCCAAAGCGGTCCCTATCGAAAATGGCTCCGACACTACCTACAACGT GCTCCCTGGCTGGTCACCCTGATCACAGGCGGCAATCACCTGTTCCTCCT CTTGGCCGTAGCCCGGCTTGCACAGGCAGTGGAGGGGGATGGACAATGGT GGATCACGCAGGGGCTACTTGCCGCTGATCGACTCTTTACCGTTGTACCT CTGCCTGGGTATATGAAGACTTGTTGGAATGTGCTCATCCCTGCGATGTG TGCCGCGACGGTGTATCGCGTGTTGTTGGTGTGGACGGAGTTGATGGATT TGATTGAAAGCAAGGTGTGA back to top
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