NO11G01150.1, NO11G01150.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G01150.1
Unique NameNO11G01150.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1317
Alignment locationchr11:416555..417871 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:416555..417871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G01150.1 vs.
Match: XP_005856301.1 (repb family protein, partial [Nannochloropsis gaditana CCMP526]; EKU20081.1 repb family protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 734.2 bits (1894), Expect = 2.400e-208
Identity = 358/444 (80.63%), Postives = 394/444 (88.74%), Query Frame = 0 
Query:    1 MVRVMPFKAYRPPAPLASTIAAPPYDVINSDEARKLADGKESSFLRVNKPEIDLPASLSPYDLRVYERGAKNLQEFISRGWLKKDDSPSYYIYAQRMGDHLQHGICGACSVEEYATGVIKRHEKTQVKKENDRTRLTYTQNANVGPVFIMYKPHEGLDSLVTSVTSSRPPETSFVAGDDGIEHLVWPISDEPTVSAIRRAFESIRYTYIADGHHRSASAFRVGEMKIKEAIAAGQNVTGNESFCFFLAVLFPADQLKIFEYNRVVKDLNGWTEEEFIGRVSEHFEVRKLSA------AAAANAAAGKVEREKSHSPAAKGEVGMCLRGTWYRLKVREMSVPKKDPVNSLDVQLLYNHVLASVLGIGDPREDERMKYVGGTRGTEELERLVEGERAWGVVAFAMFPVAVEEVMDIADAEALMPPKATWFEPKLRSGLIVRLYDDS 439
            MV+V+PFKAYRPPA LAST+AAPPYDVI+SDEAR+LADGKE SFLRVNKPEIDLPASLS YDLRVYERGAKNL+EFISRGWL+K+ +P+YYIY+QRMGDH+QHGICGACSVEEYATGVIKRHEKTQVKKENDRTRLTYTQNANVGPVF+MYKPH+ LD +V +VTS+RP ETSFVA DDGIEHLVW ++DEPTVS+IRRAFESIR++YIADGHHRSASAFRVGEMKIKEAIAAG+NVTG+ESFC FLAVLFPA+QLKI EYNR+VKDLNG TE+EF+ +V E+FEV K           A N    +    K   P  KGEVGMCLRGTWYRLK RE SVPK DPVNSLDVQ++YNHVL +VL IGDPREDERMKYVGG RG EELERLV GERAWG VAFAM+PV+VEEVMDIADAEALMPPKATWFEPKLRSGLIVRLYDDS
Sbjct:   17 MVKVLPFKAYRPPAALASTVAAPPYDVISSDEARRLADGKEDSFLRVNKPEIDLPASLSSYDLRVYERGAKNLKEFISRGWLRKEAAPAYYIYSQRMGDHIQHGICGACSVEEYATGVIKRHEKTQVKKENDRTRLTYTQNANVGPVFLMYKPHDALDEIVRTVTSTRPAETSFVADDDGIEHLVWLVNDEPTVSSIRRAFESIRFSYIADGHHRSASAFRVGEMKIKEAIAAGKNVTGDESFCLFLAVLFPANQLKILEYNRIVKDLNGLTEDEFLSKVMENFEVSKSGGEEVKPDEGAGNGGEPRPGGNKIVRPTVKGEVGMCLRGTWYRLKAREASVPKHDPVNSLDVQVVYNHVLKAVLNIGDPREDERMKYVGGVRGLEELERLVTGERAWGAVAFAMYPVSVEEVMDIADAEALMPPKATWFEPKLRSGLIVRLYDDS 460
The following BLAST results are available for this feature:
BLAST of NO11G01150.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856301.12.400e-20880.63repb family protein, partial [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G01150NO11G01150Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G01150.1NO11G01150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G01150.1.cds1NO11G01150.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G01150.1 ID=NO11G01150.1|Name=NO11G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp
ATGGTGCGGGTCATGCCGTTTAAGGCCTATCGGCCACCCGCCCCCCTCGC
CAGCACCATCGCCGCCCCTCCCTACGACGTTATCAATTCCGATGAAGCTC
GCAAGCTAGCTGATGGAAAGGAAAGCAGCTTTCTACGGGTAAACAAGCCT
GAGATCGACTTGCCCGCCAGCCTCTCTCCTTATGACCTGCGGGTGTACGA
ACGCGGAGCGAAAAATCTGCAAGAATTCATATCCCGAGGATGGTTGAAGA
AAGATGATAGCCCTTCCTATTATATTTATGCGCAGCGGATGGGCGACCAC
CTCCAGCATGGGATATGCGGCGCTTGCTCTGTGGAAGAGTACGCAACAGG
GGTGATAAAACGCCACGAAAAAACACAAGTGAAGAAGGAGAACGACCGAA
CCCGATTGACCTACACCCAAAATGCCAATGTAGGCCCTGTGTTTATCATG
TACAAGCCTCATGAGGGGCTGGACTCGCTGGTGACCTCCGTGACCAGCTC
GAGGCCGCCCGAGACGTCTTTTGTAGCGGGGGATGACGGGATTGAGCATT
TGGTCTGGCCAATAAGCGATGAGCCGACCGTGAGTGCCATCAGGCGTGCG
TTTGAGAGTATCCGGTATACGTACATTGCAGACGGACATCATCGTTCTGC
CAGTGCATTTAGGGTGGGGGAGATGAAGATCAAAGAGGCGATTGCGGCGG
GGCAGAATGTGACGGGGAACGAGTCGTTCTGCTTCTTTTTAGCGGTGTTG
TTCCCGGCGGATCAGTTGAAAATATTCGAGTATAATCGGGTGGTGAAAGA
TCTGAATGGTTGGACAGAGGAGGAATTCATTGGAAGGGTCAGCGAGCATT
TTGAGGTACGCAAGCTGAGTGCTGCTGCCGCTGCCAATGCTGCTGCAGGA
AAAGTGGAAAGGGAGAAGAGTCATTCACCAGCAGCCAAAGGGGAGGTGGG
TATGTGCCTGCGAGGGACGTGGTATAGGCTTAAGGTGCGCGAGATGTCAG
TACCGAAAAAGGATCCGGTAAACTCCCTGGATGTGCAGCTGCTATATAAC
CATGTATTGGCCTCTGTGTTGGGGATTGGGGACCCTCGGGAGGATGAGAG
GATGAAGTACGTGGGGGGGACGAGAGGAACGGAGGAGCTGGAGAGGTTGG
TGGAGGGAGAGAGGGCATGGGGGGTCGTGGCGTTTGCCATGTTCCCGGTG
GCAGTGGAGGAGGTGATGGATATTGCGGATGCGGAGGCATTGATGCCTCC
GAAGGCGACTTGGTTTGAGCCGAAGCTACGGTCGGGCCTGATTGTCAGGC
TGTATGATGACTCGTGA
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protein sequence of NO11G01150.1

>NO11G01150.1-protein ID=NO11G01150.1-protein|Name=NO11G01150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MVRVMPFKAYRPPAPLASTIAAPPYDVINSDEARKLADGKESSFLRVNKP
EIDLPASLSPYDLRVYERGAKNLQEFISRGWLKKDDSPSYYIYAQRMGDH
LQHGICGACSVEEYATGVIKRHEKTQVKKENDRTRLTYTQNANVGPVFIM
YKPHEGLDSLVTSVTSSRPPETSFVAGDDGIEHLVWPISDEPTVSAIRRA
FESIRYTYIADGHHRSASAFRVGEMKIKEAIAAGQNVTGNESFCFFLAVL
FPADQLKIFEYNRVVKDLNGWTEEEFIGRVSEHFEVRKLSAAAAANAAAG
KVEREKSHSPAAKGEVGMCLRGTWYRLKVREMSVPKKDPVNSLDVQLLYN
HVLASVLGIGDPREDERMKYVGGTRGTEELERLVEGERAWGVVAFAMFPV
AVEEVMDIADAEALMPPKATWFEPKLRSGLIVRLYDDS*
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mRNA from alignment at chr11:416555..417871-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G01150.1 ID=NO11G01150.1|Name=NO11G01150.1|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp|location=Sequence derived from alignment at chr11:416555..417871- (Nannochloropsis oceanica)
ATGGTGCGGGTCATGCCGTTTAAGGCCTATCGGCCACCCGCCCCCCTCGC
CAGCACCATCGCCGCCCCTCCCTACGACGTTATCAATTCCGATGAAGCTC
GCAAGCTAGCTGATGGAAAGGAAAGCAGCTTTCTACGGGTAAACAAGCCT
GAGATCGACTTGCCCGCCAGCCTCTCTCCTTATGACCTGCGGGTGTACGA
ACGCGGAGCGAAAAATCTGCAAGAATTCATATCCCGAGGATGGTTGAAGA
AAGATGATAGCCCTTCCTATTATATTTATGCGCAGCGGATGGGCGACCAC
CTCCAGCATGGGATATGCGGCGCTTGCTCTGTGGAAGAGTACGCAACAGG
GGTGATAAAACGCCACGAAAAAACACAAGTGAAGAAGGAGAACGACCGAA
CCCGATTGACCTACACCCAAAATGCCAATGTAGGCCCTGTGTTTATCATG
TACAAGCCTCATGAGGGGCTGGACTCGCTGGTGACCTCCGTGACCAGCTC
GAGGCCGCCCGAGACGTCTTTTGTAGCGGGGGATGACGGGATTGAGCATT
TGGTCTGGCCAATAAGCGATGAGCCGACCGTGAGTGCCATCAGGCGTGCG
TTTGAGAGTATCCGGTATACGTACATTGCAGACGGACATCATCGTTCTGC
CAGTGCATTTAGGGTGGGGGAGATGAAGATCAAAGAGGCGATTGCGGCGG
GGCAGAATGTGACGGGGAACGAGTCGTTCTGCTTCTTTTTAGCGGTGTTG
TTCCCGGCGGATCAGTTGAAAATATTCGAGTATAATCGGGTGGTGAAAGA
TCTGAATGGTTGGACAGAGGAGGAATTCATTGGAAGGGTCAGCGAGCATT
TTGAGGTACGCAAGCTGAGTGCTGCTGCCGCTGCCAATGCTGCTGCAGGA
AAAGTGGAAAGGGAGAAGAGTCATTCACCAGCAGCCAAAGGGGAGGTGGG
TATGTGCCTGCGAGGGACGTGGTATAGGCTTAAGGTGCGCGAGATGTCAG
TACCGAAAAAGGATCCGGTAAACTCCCTGGATGTGCAGCTGCTATATAAC
CATGTATTGGCCTCTGTGTTGGGGATTGGGGACCCTCGGGAGGATGAGAG
GATGAAGTACGTGGGGGGGACGAGAGGAACGGAGGAGCTGGAGAGGTTGG
TGGAGGGAGAGAGGGCATGGGGGGTCGTGGCGTTTGCCATGTTCCCGGTG
GCAGTGGAGGAGGTGATGGATATTGCGGATGCGGAGGCATTGATGCCTCC
GAAGGCGACTTGGTTTGAGCCGAAGCTACGGTCGGGCCTGATTGTCAGGC
TGTATGATGACTCGTGA
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Coding sequence (CDS) from alignment at chr11:416555..417871-

>NO11G01150.1 ID=NO11G01150.1|Name=NO11G01150.1|organism=Nannochloropsis oceanica|type=CDS|length=1317bp|location=Sequence derived from alignment at chr11:416555..417871- (Nannochloropsis oceanica)
ATGGTGCGGGTCATGCCGTTTAAGGCCTATCGGCCACCCGCCCCCCTCGC
CAGCACCATCGCCGCCCCTCCCTACGACGTTATCAATTCCGATGAAGCTC
GCAAGCTAGCTGATGGAAAGGAAAGCAGCTTTCTACGGGTAAACAAGCCT
GAGATCGACTTGCCCGCCAGCCTCTCTCCTTATGACCTGCGGGTGTACGA
ACGCGGAGCGAAAAATCTGCAAGAATTCATATCCCGAGGATGGTTGAAGA
AAGATGATAGCCCTTCCTATTATATTTATGCGCAGCGGATGGGCGACCAC
CTCCAGCATGGGATATGCGGCGCTTGCTCTGTGGAAGAGTACGCAACAGG
GGTGATAAAACGCCACGAAAAAACACAAGTGAAGAAGGAGAACGACCGAA
CCCGATTGACCTACACCCAAAATGCCAATGTAGGCCCTGTGTTTATCATG
TACAAGCCTCATGAGGGGCTGGACTCGCTGGTGACCTCCGTGACCAGCTC
GAGGCCGCCCGAGACGTCTTTTGTAGCGGGGGATGACGGGATTGAGCATT
TGGTCTGGCCAATAAGCGATGAGCCGACCGTGAGTGCCATCAGGCGTGCG
TTTGAGAGTATCCGGTATACGTACATTGCAGACGGACATCATCGTTCTGC
CAGTGCATTTAGGGTGGGGGAGATGAAGATCAAAGAGGCGATTGCGGCGG
GGCAGAATGTGACGGGGAACGAGTCGTTCTGCTTCTTTTTAGCGGTGTTG
TTCCCGGCGGATCAGTTGAAAATATTCGAGTATAATCGGGTGGTGAAAGA
TCTGAATGGTTGGACAGAGGAGGAATTCATTGGAAGGGTCAGCGAGCATT
TTGAGGTACGCAAGCTGAGTGCTGCTGCCGCTGCCAATGCTGCTGCAGGA
AAAGTGGAAAGGGAGAAGAGTCATTCACCAGCAGCCAAAGGGGAGGTGGG
TATGTGCCTGCGAGGGACGTGGTATAGGCTTAAGGTGCGCGAGATGTCAG
TACCGAAAAAGGATCCGGTAAACTCCCTGGATGTGCAGCTGCTATATAAC
CATGTATTGGCCTCTGTGTTGGGGATTGGGGACCCTCGGGAGGATGAGAG
GATGAAGTACGTGGGGGGGACGAGAGGAACGGAGGAGCTGGAGAGGTTGG
TGGAGGGAGAGAGGGCATGGGGGGTCGTGGCGTTTGCCATGTTCCCGGTG
GCAGTGGAGGAGGTGATGGATATTGCGGATGCGGAGGCATTGATGCCTCC
GAAGGCGACTTGGTTTGAGCCGAAGCTACGGTCGGGCCTGATTGTCAGGC
TGTATGATGACTCGTGA
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Synonyms
Publications