NO11G00710.1, NO11G00710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO11G00710.1
Unique NameNO11G00710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length855
Alignment locationchr11:290633..291487 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr11genomechr11:290633..291487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO11G00710.1 vs.
Match: EWM25112.1 (short chain dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 394.8 bits (1013), Expect = 2.200e-106
Identity = 201/275 (73.09%), Postives = 230/275 (83.64%), Query Frame = 0 
Query:    1 MAPDLKGKRCLVTGGTEPASVGYVSALACLAAGAVHVVVVGRDLAKMGSAVPAGLSGLEGNLKKPETMAELVGAAVDKLGGGLDVLIVSGGNGYSEYLGLDPTDAASYHLMYDMAVLSPMFLVAAAAPFLSQAPNGGGSVVMVSSLAAHCPWPDTAPFNLAKAAQNALVETLAFKHRQDGFRVNGVLPGCIHTKALDVMAVKKGRDLGEYASLRANAIPMGRNGTPEEVAQAVLFLASPASSYMTGTLLPVDGGLGLSSWFNTPRLLSEYMGGTK 276
            M  DL G+RCLVTGGT P+SVGY  A ACL AGA  VVVVGR++AK+G++   GLS LEGNLK PETM  L+  A+  L G LDVLI+SGGNGYSEYLGLDPTDAASY LMYD+AVLSP+ L  AAAP+LSQ+  GGGSVVMVSSLA+H PWPDTAPFNLAKAAQNAL+ETLAFKHRQDGFRVNG+LP CIHT ALDVMA +K + + +YA+LRA + PMGR GTP+EVA AVLFLASPASS+ TG L+PVDGGL LSSWFN P+LL+EY+GG K
Sbjct:    1 MVLDLSGRRCLVTGGTVPSSVGYACATACLDAGAARVVVVGRNVAKLGNSPLPGLSCLEGNLKNPETMGALLIDAIKLLDGRLDVLIISGGNGYSEYLGLDPTDAASYRLMYDVAVLSPLLLTTAAAPYLSQS-EGGGSVVMVSSLASHVPWPDTAPFNLAKAAQNALIETLAFKHRQDGFRVNGILPACIHTGALDVMAARKNKSVIDYAALRAESHPMGRIGTPQEVAHAVLFLASPASSFTTGALIPVDGGLKLSSWFNRPKLLAEYVGGAK 274
The following BLAST results are available for this feature:
BLAST of NO11G00710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM25112.12.200e-10673.09short chain dehydrogenase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO11G00710NO11G00710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO11G00710.1NO11G00710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO11G00710.1.cds1NO11G00710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO11G00710.1 ID=NO11G00710.1|Name=NO11G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=855bp
ATGGCCCCGGATCTCAAGGGCAAACGCTGCCTCGTGACCGGCGGGACTGA
ACCCGCATCCGTTGGCTACGTCTCAGCTTTGGCTTGTCTGGCTGCGGGCG
CCGTGCATGTCGTCGTGGTTGGCCGGGACCTTGCCAAGATGGGTAGCGCC
GTCCCCGCAGGCTTGTCGGGCTTGGAAGGCAATCTGAAAAAGCCCGAGAC
GATGGCAGAGCTTGTCGGAGCCGCCGTCGATAAGCTTGGTGGGGGGCTAG
ATGTATTAATTGTCAGTGGGGGAAATGGCTACTCAGAGTACTTGGGACTG
GATCCGACGGATGCCGCGAGCTATCATCTCATGTACGACATGGCCGTGCT
CTCCCCAATGTTTCTTGTCGCGGCCGCCGCCCCCTTTCTCAGCCAGGCCC
CCAACGGTGGCGGGTCTGTAGTGATGGTCAGCTCCCTTGCCGCGCACTGT
CCATGGCCTGACACTGCTCCTTTTAATCTGGCCAAGGCGGCACAGAACGC
ATTGGTTGAGACTCTGGCGTTCAAGCATCGACAAGACGGTTTCCGCGTGA
ATGGGGTGCTGCCCGGATGCATCCACACCAAAGCATTGGACGTAATGGCC
GTGAAAAAAGGCCGCGATCTTGGTGAATATGCCTCGTTGCGCGCTAATGC
GATCCCGATGGGTCGAAATGGCACGCCGGAAGAAGTGGCACAAGCCGTGT
TGTTTCTTGCCTCGCCCGCCTCCTCCTACATGACGGGGACGTTGTTACCG
GTGGACGGAGGATTAGGACTGTCTTCCTGGTTTAACACGCCAAGACTGTT
GTCAGAGTACATGGGGGGGACCAAGGTGGAGAGCACCAAAGCGTCCAAGG
CGTAG
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protein sequence of NO11G00710.1

>NO11G00710.1-protein ID=NO11G00710.1-protein|Name=NO11G00710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MAPDLKGKRCLVTGGTEPASVGYVSALACLAAGAVHVVVVGRDLAKMGSA
VPAGLSGLEGNLKKPETMAELVGAAVDKLGGGLDVLIVSGGNGYSEYLGL
DPTDAASYHLMYDMAVLSPMFLVAAAAPFLSQAPNGGGSVVMVSSLAAHC
PWPDTAPFNLAKAAQNALVETLAFKHRQDGFRVNGVLPGCIHTKALDVMA
VKKGRDLGEYASLRANAIPMGRNGTPEEVAQAVLFLASPASSYMTGTLLP
VDGGLGLSSWFNTPRLLSEYMGGTKVESTKASKA*
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mRNA from alignment at chr11:290633..291487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO11G00710.1 ID=NO11G00710.1|Name=NO11G00710.1|organism=Nannochloropsis oceanica|type=mRNA|length=855bp|location=Sequence derived from alignment at chr11:290633..291487- (Nannochloropsis oceanica)
ATGGCCCCGGATCTCAAGGGCAAACGCTGCCTCGTGACCGGCGGGACTGA
ACCCGCATCCGTTGGCTACGTCTCAGCTTTGGCTTGTCTGGCTGCGGGCG
CCGTGCATGTCGTCGTGGTTGGCCGGGACCTTGCCAAGATGGGTAGCGCC
GTCCCCGCAGGCTTGTCGGGCTTGGAAGGCAATCTGAAAAAGCCCGAGAC
GATGGCAGAGCTTGTCGGAGCCGCCGTCGATAAGCTTGGTGGGGGGCTAG
ATGTATTAATTGTCAGTGGGGGAAATGGCTACTCAGAGTACTTGGGACTG
GATCCGACGGATGCCGCGAGCTATCATCTCATGTACGACATGGCCGTGCT
CTCCCCAATGTTTCTTGTCGCGGCCGCCGCCCCCTTTCTCAGCCAGGCCC
CCAACGGTGGCGGGTCTGTAGTGATGGTCAGCTCCCTTGCCGCGCACTGT
CCATGGCCTGACACTGCTCCTTTTAATCTGGCCAAGGCGGCACAGAACGC
ATTGGTTGAGACTCTGGCGTTCAAGCATCGACAAGACGGTTTCCGCGTGA
ATGGGGTGCTGCCCGGATGCATCCACACCAAAGCATTGGACGTAATGGCC
GTGAAAAAAGGCCGCGATCTTGGTGAATATGCCTCGTTGCGCGCTAATGC
GATCCCGATGGGTCGAAATGGCACGCCGGAAGAAGTGGCACAAGCCGTGT
TGTTTCTTGCCTCGCCCGCCTCCTCCTACATGACGGGGACGTTGTTACCG
GTGGACGGAGGATTAGGACTGTCTTCCTGGTTTAACACGCCAAGACTGTT
GTCAGAGTACATGGGGGGGACCAAGGTGGAGAGCACCAAAGCGTCCAAGG
CGTAG
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Coding sequence (CDS) from alignment at chr11:290633..291487-

>NO11G00710.1 ID=NO11G00710.1|Name=NO11G00710.1|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at chr11:290633..291487- (Nannochloropsis oceanica)
ATGGCCCCGGATCTCAAGGGCAAACGCTGCCTCGTGACCGGCGGGACTGA
ACCCGCATCCGTTGGCTACGTCTCAGCTTTGGCTTGTCTGGCTGCGGGCG
CCGTGCATGTCGTCGTGGTTGGCCGGGACCTTGCCAAGATGGGTAGCGCC
GTCCCCGCAGGCTTGTCGGGCTTGGAAGGCAATCTGAAAAAGCCCGAGAC
GATGGCAGAGCTTGTCGGAGCCGCCGTCGATAAGCTTGGTGGGGGGCTAG
ATGTATTAATTGTCAGTGGGGGAAATGGCTACTCAGAGTACTTGGGACTG
GATCCGACGGATGCCGCGAGCTATCATCTCATGTACGACATGGCCGTGCT
CTCCCCAATGTTTCTTGTCGCGGCCGCCGCCCCCTTTCTCAGCCAGGCCC
CCAACGGTGGCGGGTCTGTAGTGATGGTCAGCTCCCTTGCCGCGCACTGT
CCATGGCCTGACACTGCTCCTTTTAATCTGGCCAAGGCGGCACAGAACGC
ATTGGTTGAGACTCTGGCGTTCAAGCATCGACAAGACGGTTTCCGCGTGA
ATGGGGTGCTGCCCGGATGCATCCACACCAAAGCATTGGACGTAATGGCC
GTGAAAAAAGGCCGCGATCTTGGTGAATATGCCTCGTTGCGCGCTAATGC
GATCCCGATGGGTCGAAATGGCACGCCGGAAGAAGTGGCACAAGCCGTGT
TGTTTCTTGCCTCGCCCGCCTCCTCCTACATGACGGGGACGTTGTTACCG
GTGGACGGAGGATTAGGACTGTCTTCCTGGTTTAACACGCCAAGACTGTT
GTCAGAGTACATGGGGGGGACCAAGGTGGAGAGCACCAAAGCGTCCAAGG
CGTAG
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Synonyms
Publications