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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr11 | genome | chr11:253608..255020 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO11G00590.1 vs.
Match: EWM25141.1 (Leucine-rich repeat, ribonuclease inhibitor subtype [Nannochloropsis gaditana]) HSP 1 Score: 410.6 bits (1054), Expect = 6.500e-111 Identity = 250/460 (54.35%), Postives = 298/460 (64.78%), Query Frame = 0
Query: 23 QPTHLATLPFPLGWQLICDNLMTPDIMRLAQTSRDHLGVGFSMVQHLVLRLDDADQDHGGN-EGTHA--ASQSVTMQLSHLLARCPHLETLSCWSLASKKSIYLGRAL------CLQPCFP--RLRVLALTNAGLGAEGLRQLLPSFIYLPALEELLLDGNALGNQGVQALARCLRG-GSGDGTTDKGGDVHAHTYASASCQRLKVLSLAANGIGATGARELALLLAGVGHSAGAAAPPPPPLADPGPPGAGSSILSGRISPICGDIPSYNGLIYQYQPPNHSHACVFLEILSLDGNVLGPTGTAHLAHAFRGGACYYLRQLHLRNNDVRGEGLRELLSAFAIGACPRLAVLSLESNMFGTQGAKLLARALTSGACAELLVLNLNFTFIGEHGTRALAEAFGRGACRRIQKLYFKSACLQRAGTIDHLLAATAATVGDVGGIGGRRGERREDGREAVLVL 471
QP LA LP+P+GW+L+CD L T DI+ LAQT+ +HL +GFSM+QHL LR+ + D++ G EG + S++V L+ L+RC L++LSC SL K LG A+ CL P R+RVLAL++AGL EGL LLPS PALEELLLDGNALGNQGV+A +R LRG G D GG V + + Q LKVLSLA+NGIG GA ELALLL+G G+ A + G S++L Q+Q + H C LE L LDGNVLGP+GTAHLA AFR GAC LRQLHLRNNDVRG+GL++LLSAFA GACP L VLSLESNMFGT GA+ LA AL+SGACA+L VLNLNFTFIGEHG RALAEAFG+GACRRI LY KSACL+RA T+DHL A+T A G R G + VLVL
Sbjct: 32 QPIPLARLPYPVGWRLVCDFLGTHDIIHLAQTTSEHLNMGFSMIQHLTLRIREEDENLGRKGEGCQSMCTSRAVGSHLARFLSRCVELDSLSCRSLTFSKGECLGDAMRQLRIRCLHSPSPLSRVRVLALSHAGLRVEGLLHLLPSLHLFPALEELLLDGNALGNQGVRAFSRSLRGLGWKDSD---GGRVSERFSSMGTGQCLKVLSLASNGIGTAGANELALLLSGAGNGDVRA-------WNGGDAHPASAVLE----------------TSQHQSLSQRHPCALLEALCLDGNVLGPSGTAHLARAFRRGACTQLRQLHLRNNDVRGQGLQDLLSAFASGACPHLTVLSLESNMFGTVGARWLAHALSSGACADLRVLNLNFTFIGEHGMRALAEAFGQGACRRIHTLYLKSACLRRASTLDHLQASTRA--------GEREGRGERERGYPVLVL 457
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO11G00590.1 ID=NO11G00590.1|Name=NO11G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp ATGTGGATCCCTTCGACTGAAGCCAGGGCAAATACTGCCGCCAATGAGCC TCTCTCTCGCCTCCGTCAGCCGACGCATCTAGCCACGCTCCCATTCCCCT TAGGCTGGCAGCTAATTTGCGACAATTTGATGACCCCTGATATTATGCGT TTGGCCCAGACGTCCAGGGATCACTTGGGCGTCGGGTTCTCCATGGTCCA GCACCTTGTCCTCCGCCTTGACGACGCGGATCAAGACCACGGTGGCAATG AGGGAACGCATGCCGCGTCCCAGAGCGTCACCATGCAGCTGAGTCACTTG TTAGCTCGATGTCCGCATCTTGAGACACTTTCATGCTGGTCCCTGGCATC TAAAAAGTCTATTTATCTCGGTCGCGCCCTGTGCCTCCAGCCCTGCTTCC CTCGACTGCGTGTGCTCGCCTTGACCAATGCCGGGCTAGGTGCAGAAGGT CTACGACAATTACTGCCCTCTTTTATTTATCTTCCTGCACTAGAAGAGCT ACTCTTGGATGGAAACGCTCTGGGGAATCAAGGCGTTCAGGCTTTGGCTC GATGCCTCCGAGGAGGCAGTGGTGACGGGACAACAGACAAAGGAGGGGAT GTCCACGCGCATACATACGCATCAGCATCATGTCAGCGGCTCAAGGTCTT ATCATTGGCTGCCAATGGTATTGGAGCCACGGGGGCGCGAGAATTGGCCC TGCTGCTGGCAGGGGTAGGTCATAGTGCTGGTGCTGCTGCTCCTCCTCCT CCTCCTCTAGCTGATCCTGGTCCTCCTGGTGCAGGAAGCTCCATTCTTAG CGGGCGCATTTCACCCATATGTGGCGATATCCCCTCTTACAATGGCCTCA TATATCAATATCAGCCACCGAACCACTCGCATGCCTGCGTCTTTCTCGAA ATCCTTTCCTTAGATGGCAACGTGTTGGGGCCTACAGGCACAGCACACCT TGCTCACGCCTTCCGAGGAGGGGCGTGTTATTATCTTCGGCAACTCCACC TTCGAAATAATGATGTCCGTGGGGAAGGCCTTCGAGAGCTCCTCAGTGCC TTTGCCATCGGAGCCTGCCCGCGACTGGCAGTCTTGAGCTTAGAATCCAA TATGTTTGGGACACAGGGCGCGAAATTGCTAGCGCGTGCCTTAACTTCCG GGGCATGTGCAGAGTTGCTCGTTCTGAATTTGAACTTTACCTTTATTGGC GAGCATGGGACAAGGGCTCTAGCTGAGGCGTTTGGACGAGGGGCATGTCG ACGCATACAGAAGTTGTACTTCAAGTCGGCTTGTTTGCAGAGGGCAGGGA CGATTGATCATTTGCTGGCGGCAACGGCGGCAACAGTTGGGGACGTTGGC GGGATAGGCGGACGAAGGGGAGAACGAAGGGAGGATGGGAGGGAGGCGGT GCTAGTGTTGTAA back to topprotein sequence of NO11G00590.1 >NO11G00590.1-protein ID=NO11G00590.1-protein|Name=NO11G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp MWIPSTEARANTAANEPLSRLRQPTHLATLPFPLGWQLICDNLMTPDIMR LAQTSRDHLGVGFSMVQHLVLRLDDADQDHGGNEGTHAASQSVTMQLSHL LARCPHLETLSCWSLASKKSIYLGRALCLQPCFPRLRVLALTNAGLGAEG LRQLLPSFIYLPALEELLLDGNALGNQGVQALARCLRGGSGDGTTDKGGD VHAHTYASASCQRLKVLSLAANGIGATGARELALLLAGVGHSAGAAAPPP PPLADPGPPGAGSSILSGRISPICGDIPSYNGLIYQYQPPNHSHACVFLE ILSLDGNVLGPTGTAHLAHAFRGGACYYLRQLHLRNNDVRGEGLRELLSA FAIGACPRLAVLSLESNMFGTQGAKLLARALTSGACAELLVLNLNFTFIG EHGTRALAEAFGRGACRRIQKLYFKSACLQRAGTIDHLLAATAATVGDVG GIGGRRGERREDGREAVLVL* back to topmRNA from alignment at chr11:253608..255020- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO11G00590.1 ID=NO11G00590.1|Name=NO11G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp|location=Sequence derived from alignment at chr11:253608..255020- (Nannochloropsis oceanica) ATGTGGATCCCTTCGACTGAAGCCAGGGCAAATACTGCCGCCAATGAGCC
TCTCTCTCGCCTCCGTCAGCCGACGCATCTAGCCACGCTCCCATTCCCCT
TAGGCTGGCAGCTAATTTGCGACAATTTGATGACCCCTGATATTATGCGT
TTGGCCCAGACGTCCAGGGATCACTTGGGCGTCGGGTTCTCCATGGTCCA
GCACCTTGTCCTCCGCCTTGACGACGCGGATCAAGACCACGGTGGCAATG
AGGGAACGCATGCCGCGTCCCAGAGCGTCACCATGCAGCTGAGTCACTTG
TTAGCTCGATGTCCGCATCTTGAGACACTTTCATGCTGGTCCCTGGCATC
TAAAAAGTCTATTTATCTCGGTCGCGCCCTGTGCCTCCAGCCCTGCTTCC
CTCGACTGCGTGTGCTCGCCTTGACCAATGCCGGGCTAGGTGCAGAAGGT
CTACGACAATTACTGCCCTCTTTTATTTATCTTCCTGCACTAGAAGAGCT
ACTCTTGGATGGAAACGCTCTGGGGAATCAAGGCGTTCAGGCTTTGGCTC
GATGCCTCCGAGGAGGCAGTGGTGACGGGACAACAGACAAAGGAGGGGAT
GTCCACGCGCATACATACGCATCAGCATCATGTCAGCGGCTCAAGGTCTT
ATCATTGGCTGCCAATGGTATTGGAGCCACGGGGGCGCGAGAATTGGCCC
TGCTGCTGGCAGGGGTAGGTCATAGTGCTGGTGCTGCTGCTCCTCCTCCT
CCTCCTCTAGCTGATCCTGGTCCTCCTGGTGCAGGAAGCTCCATTCTTAG
CGGGCGCATTTCACCCATATGTGGCGATATCCCCTCTTACAATGGCCTCA
TATATCAATATCAGCCACCGAACCACTCGCATGCCTGCGTCTTTCTCGAA
ATCCTTTCCTTAGATGGCAACGTGTTGGGGCCTACAGGCACAGCACACCT
TGCTCACGCCTTCCGAGGAGGGGCGTGTTATTATCTTCGGCAACTCCACC
TTCGAAATAATGATGTCCGTGGGGAAGGCCTTCGAGAGCTCCTCAGTGCC
TTTGCCATCGGAGCCTGCCCGCGACTGGCAGTCTTGAGCTTAGAATCCAA
TATGTTTGGGACACAGGGCGCGAAATTGCTAGCGCGTGCCTTAACTTCCG
GGGCATGTGCAGAGTTGCTCGTTCTGAATTTGAACTTTACCTTTATTGGC
GAGCATGGGACAAGGGCTCTAGCTGAGGCGTTTGGACGAGGGGCATGTCG
ACGCATACAGAAGTTGTACTTCAAGTCGGCTTGTTTGCAGAGGGCAGGGA
CGATTGATCATTTGCTGGCGGCAACGGCGGCAACAGTTGGGGACGTTGGC
GGGATAGGCGGACGAAGGGGAGAACGAAGGGAGGATGGGAGGGAGGCGGT
GCTAGTGTTGTAA back to topCoding sequence (CDS) from alignment at chr11:253608..255020- >NO11G00590.1 ID=NO11G00590.1|Name=NO11G00590.1|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at chr11:253608..255020- (Nannochloropsis oceanica) ATGTGGATCCCTTCGACTGAAGCCAGGGCAAATACTGCCGCCAATGAGCC TCTCTCTCGCCTCCGTCAGCCGACGCATCTAGCCACGCTCCCATTCCCCT TAGGCTGGCAGCTAATTTGCGACAATTTGATGACCCCTGATATTATGCGT TTGGCCCAGACGTCCAGGGATCACTTGGGCGTCGGGTTCTCCATGGTCCA GCACCTTGTCCTCCGCCTTGACGACGCGGATCAAGACCACGGTGGCAATG AGGGAACGCATGCCGCGTCCCAGAGCGTCACCATGCAGCTGAGTCACTTG TTAGCTCGATGTCCGCATCTTGAGACACTTTCATGCTGGTCCCTGGCATC TAAAAAGTCTATTTATCTCGGTCGCGCCCTGTGCCTCCAGCCCTGCTTCC CTCGACTGCGTGTGCTCGCCTTGACCAATGCCGGGCTAGGTGCAGAAGGT CTACGACAATTACTGCCCTCTTTTATTTATCTTCCTGCACTAGAAGAGCT ACTCTTGGATGGAAACGCTCTGGGGAATCAAGGCGTTCAGGCTTTGGCTC GATGCCTCCGAGGAGGCAGTGGTGACGGGACAACAGACAAAGGAGGGGAT GTCCACGCGCATACATACGCATCAGCATCATGTCAGCGGCTCAAGGTCTT ATCATTGGCTGCCAATGGTATTGGAGCCACGGGGGCGCGAGAATTGGCCC TGCTGCTGGCAGGGGTAGGTCATAGTGCTGGTGCTGCTGCTCCTCCTCCT CCTCCTCTAGCTGATCCTGGTCCTCCTGGTGCAGGAAGCTCCATTCTTAG CGGGCGCATTTCACCCATATGTGGCGATATCCCCTCTTACAATGGCCTCA TATATCAATATCAGCCACCGAACCACTCGCATGCCTGCGTCTTTCTCGAA ATCCTTTCCTTAGATGGCAACGTGTTGGGGCCTACAGGCACAGCACACCT TGCTCACGCCTTCCGAGGAGGGGCGTGTTATTATCTTCGGCAACTCCACC TTCGAAATAATGATGTCCGTGGGGAAGGCCTTCGAGAGCTCCTCAGTGCC TTTGCCATCGGAGCCTGCCCGCGACTGGCAGTCTTGAGCTTAGAATCCAA TATGTTTGGGACACAGGGCGCGAAATTGCTAGCGCGTGCCTTAACTTCCG GGGCATGTGCAGAGTTGCTCGTTCTGAATTTGAACTTTACCTTTATTGGC GAGCATGGGACAAGGGCTCTAGCTGAGGCGTTTGGACGAGGGGCATGTCG ACGCATACAGAAGTTGTACTTCAAGTCGGCTTGTTTGCAGAGGGCAGGGA CGATTGATCATTTGCTGGCGGCAACGGCGGCAACAGTTGGGGACGTTGGC GGGATAGGCGGACGAAGGGGAGAACGAAGGGAGGATGGGAGGGAGGCGGT GCTAGTGTTGTAA back to top
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