NO10G03990.1, NO10G03990.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G03990.1
Unique Name	NO10G03990.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2182
Alignment location	chr10:1185968..1188149 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:1185968..1188149 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO10G03990.1 vs.

BLAST of NO10G03990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G03990	NO10G03990	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G03990.1	NO10G03990.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G03990.1.cds1	NO10G03990.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:1185968..1188149+
coding sequence from alignment at chr10:1185968..1188149+

mRNA sequence

>NO10G03990.1 ID=NO10G03990.1|Name=NO10G03990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2182bp
ATCTTCCTCATCTTTAGTTGTTTCTATGTCCCGCCACTGCTTACCCTATT
GCCCTTCTCCATGCAGGACGCCTCATTTCTTTGGCACACTCCCAGCACTA
CTGCAGTTGCTGCTGCTGCCGCCGCCTGATCCTCATTTTTTGGCCCCTCC
CACAGAGGCAAATCCCCTTCCACCTCCTCATCTCCTTCTCCCCGTACTCC
TCAACAACCACCCTACATGTCCTCCGCCAGGTCGTTTTCGCCAAAGCTCG
TCATGGACAGACGCCCTCGGAGGCTTGGAGGGTTGGAGGGTAAAATGTGA
AGGTGCAAGGGAGGAGGAGGTCGAAGTATAGAATTTGGCGAGGCAGCGAG
GCAACGTCCATCTTCCTTCTATTCGGTCCTCCGCTACCCCACTGAGTGAC
ACAGGTCACAAATTGCATGGGAGTGGAGGGCATGCGGAGGGAGCGGGGGA
CAATTTTTCATTTATGTGTATGCGGTTTCCTCCCATTTGACGTCCACAAC
CCTAGTCTCATTTCATTCTCCCTCACCTCATAAAACCCCACACATTTGAA
CAGCTTGAAGGAGGACCCGTGCCTTCGTGACCAATATCGCAACTAGAAGG
CTGCTGATGGCGGTTCTCCTTGCTCAAGCCTCTCAGCTCCATTGACTTCC
TGCTACGAGCTATTCCCCCCTTGAAACATAAACGCGTGCACCCGCTCCCT
TCGACTTCGCATCTGTTCCCGTACGAACCATGTGTGAAGCCTTGGACGTC
CGCGGAGCCTTCGTTGTGGTTTTCATTTTCTTGGCATGACCCTAACTATT
CTTCGTGAGCAGTAGAGAAGGTGCTCCGGAGGTAGTCTCCTCGTTCTCTC
GGAAAAATGAAAGATGGAAAAGAAAGTGGGAAAGAGGAGTAGGGGTGATG
GGGAGAGAAGAGGGGAAAGAGGCTATCTCGCCTAGCAATAAGCGTGCGCT
TGGAGGAGATTATGATGGAGAATGGGCACGTGAATAATGGATGAGAATCA
CGTGGATAGATGGACGGGCGTGAGGGGGCACGTGTGGAAACGAGGAGAAA
ATCGAAAGGAGGAGAATTCGAGAAGACAGAGGGAAGAAAGACAGGAATAG
ACAGAAAGGGAAGATTGTCGGCTAGGAACCCTGAACCCTTTCAATGTGAC
TATAAGCAAGTCTTATATGAATGTTTTACGTGCCAATCACCTCGTCCTTA
GAATTGAACAGGGTCTTGGATCCGTCAATACTCTGGATTTGGAGGAAAAG
AGAGAGATCGCCTCGAATAGGCAAACGCAATTGCCCAACTCACACTTACA
TCACACATTCGCCACATAAGCCATACAGTGATAGCATGCAGCCACAACAA
GCGGCATTGGCGGACGATGAGAAGCTTCTCCAGATGCTGTATTGCAGCCT
CAAGCGGGCCATCGCCCCTTTGCACGAGACTGCAGGTCCAGATTCTCCGC
GCACCCCAACACCCTCCCCTCAGATCATCCCCTTGTTAAGTTTAGTCGTT
CTCGATGATAAGGGCCACGACGAAACCCTTCTCCTCACCCAGAATCACCC
CCTAAGTCAAAAGAACCCACTAACACTGGATCCTGCCCTGCAAACAAGTA
GCACCAACACCCGCGCCCTGGCGAGCCACTTGAATCAGGAGTTGCATCTT
GCTATGCAGGCAGACATTCCCTTAGGTGCCCGCGCCTACGAAATTTCCCA
AGCCGCCTTGTGCCTGCGAATCGCGCTCATGGAATCTACGGGAGTGGGAG
AGCGTGATACCGACACAAGCAGGGGGCCAAATATGATGCAGCAGCACGAG
AGGCTACAGCCACAGCTACAGGAACAACAGCAGCAATCGCATCAGCAGCC
AGGTGTGGCGGCGTCCGAAGGCTCACTAGCATCTGACTCGCTCATGCAGA
GGAAACGGCTGAAGACAAGGCAGAGTGAGGCCACGGGAAATTGTGCAGGG
CAAGGACAGGAGGAAGGGGATGAGAACGACGAAGATGAGTGGTACCACAG
GAACAAGGGGGCCAAGCCACTGTCACCAGTTGATTTCAAAATGGTGGTTG
GCGTATTATTTTCCCTTCATATCTTGGTGACCCAAGGGCCCCTGAATCTT
GTCTTATTTCTGGTGGCCTACTTAGTCATGTCCGCAGTTGTTAAGATGTT
GCTGGCGATTATGTCTTGATTCTCGCCGGTCC

protein sequence of NO10G03990.1

>NO10G03990.1-protein ID=NO10G03990.1-protein|Name=NO10G03990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MFYVPITSSLELNRVLDPSILWIWRKRERSPRIGKRNCPTHTYITHSPHK
PYSDSMQPQQAALADDEKLLQMLYCSLKRAIAPLHETAGPDSPRTPTPSP
QIIPLLSLVVLDDKGHDETLLLTQNHPLSQKNPLTLDPALQTSSTNTRAL
ASHLNQELHLAMQADIPLGARAYEISQAALCLRIALMESTGVGERDTDTS
RGPNMMQQHERLQPQLQEQQQQSHQQPGVAASEGSLASDSLMQRKRLKTR
QSEATGNCAGQGQEEGDENDEDEWYHRNKGAKPLSPVDFKMVVGVLFSLH
ILVTQGPLNLVLFLVAYLVMSAVVKMLLAIMS*

mRNA from alignment at chr10:1185968..1188149+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G03990.1 ID=NO10G03990.1|Name=NO10G03990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2182bp|location=Sequence derived from alignment at chr10:1185968..1188149+ (Nannochloropsis oceanica)
ATCTTCCTCATCTTTAGTTGTTTCTATGTCCCGCCACTGCTTACCCTATT
GCCCTTCTCCATGCAGGACGCCTCATTTCTTTGGCACACTCCCAGCACTA
CTGCAGTTGCTGCTGCTGCCGCCGCCTGATCCTCATTTTTTGGCCCCTCC
CACAGAGGCAAATCCCCTTCCACCTCCTCATCTCCTTCTCCCCGTACTCC
TCAACAACCACCCTACATGTCCTCCGCCAGGTCGTTTTCGCCAAAGCTCG
TCATGGACAGACGCCCTCGGAGGCTTGGAGGGTTGGAGGGTAAAATGTGA
AGGTGCAAGGGAGGAGGAGGTCGAAGTATAGAATTTGGCGAGGCAGCGAG
GCAACGTCCATCTTCCTTCTATTCGGTCCTCCGCTACCCCACTGAGTGAC
ACAGGTCACAAATTGCATGGGAGTGGAGGGCATGCGGAGGGAGCGGGGGA
CAATTTTTCATTTATGTGTATGCGGTTTCCTCCCATTTGACGTCCACAAC
CCTAGTCTCATTTCATTCTCCCTCACCTCATAAAACCCCACACATTTGAA
CAGCTTGAAGGAGGACCCGTGCCTTCGTGACCAATATCGCAACTAGAAGG
CTGCTGATGGCGGTTCTCCTTGCTCAAGCCTCTCAGCTCCATTGACTTCC
TGCTACGAGCTATTCCCCCCTTGAAACATAAACGCGTGCACCCGCTCCCT
TCGACTTCGCATCTGTTCCCGTACGAACCATGTGTGAAGCCTTGGACGTC
CGCGGAGCCTTCGTTGTGGTTTTCATTTTCTTGGCATGACCCTAACTATT
CTTCGTGAGCAGTAGAGAAGGTGCTCCGGAGGTAGTCTCCTCGTTCTCTC
GGAAAAATGAAAGATGGAAAAGAAAGTGGGAAAGAGGAGTAGGGGTGATG
GGGAGAGAAGAGGGGAAAGAGGCTATCTCGCCTAGCAATAAGCGTGCGCT
TGGAGGAGATTATGATGGAGAATGGGCACGTGAATAATGGATGAGAATCA
CGTGGATAGATGGACGGGCGTGAGGGGGCACGTGTGGAAACGAGGAGAAA
ATCGAAAGGAGGAGAATTCGAGAAGACAGAGGGAAGAAAGACAGGAATAG
ACAGAAAGGGAAGATTGTCGGCTAGGAACCCTGAACCCTTTCAATGTGAC
TATAAGCAAGTCTTATATGAATGTTTTACGTGCCAATCACCTCGTCCTTA
GAATTGAACAGGGTCTTGGATCCGTCAATACTCTGGATTTGGAGGAAAAG
AGAGAGATCGCCTCGAATAGGCAAACGCAATTGCCCAACTCACACTTACA
TCACACATTCGCCACATAAGCCATACAGTGATAGCATGCAGCCACAACAA
GCGGCATTGGCGGACGATGAGAAGCTTCTCCAGATGCTGTATTGCAGCCT
CAAGCGGGCCATCGCCCCTTTGCACGAGACTGCAGGTCCAGATTCTCCGC
GCACCCCAACACCCTCCCCTCAGATCATCCCCTTGTTAAGTTTAGTCGTT
CTCGATGATAAGGGCCACGACGAAACCCTTCTCCTCACCCAGAATCACCC
CCTAAGTCAAAAGAACCCACTAACACTGGATCCTGCCCTGCAAACAAGTA
GCACCAACACCCGCGCCCTGGCGAGCCACTTGAATCAGGAGTTGCATCTT
GCTATGCAGGCAGACATTCCCTTAGGTGCCCGCGCCTACGAAATTTCCCA
AGCCGCCTTGTGCCTGCGAATCGCGCTCATGGAATCTACGGGAGTGGGAG
AGCGTGATACCGACACAAGCAGGGGGCCAAATATGATGCAGCAGCACGAG
AGGCTACAGCCACAGCTACAGGAACAACAGCAGCAATCGCATCAGCAGCC
AGGTGTGGCGGCGTCCGAAGGCTCACTAGCATCTGACTCGCTCATGCAGA
GGAAACGGCTGAAGACAAGGCAGAGTGAGGCCACGGGAAATTGTGCAGGG
CAAGGACAGGAGGAAGGGGATGAGAACGACGAAGATGAGTGGTACCACAG
GAACAAGGGGGCCAAGCCACTGTCACCAGTTGATTTCAAAATGGTGGTTG
GCGTATTATTTTCCCTTCATATCTTGGTGACCCAAGGGCCCCTGAATCTT
GTCTTATTTCTGGTGGCCTACTTAGTCATGTCCGCAGTTGTTAAGATGTT
GCTGGCGATTATGTCTTGATTCTCGCCGGTCC

Coding sequence (CDS) from alignment at chr10:1185968..1188149+

>NO10G03990.1 ID=NO10G03990.1|Name=NO10G03990.1|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at chr10:1185968..1188149+ (Nannochloropsis oceanica)
ATGTTTTACGTGCCAATCACCTCGTCCTTAGAATTGAACAGGGTCTTGGA
TCCGTCAATACTCTGGATTTGGAGGAAAAGAGAGAGATCGCCTCGAATAG
GCAAACGCAATTGCCCAACTCACACTTACATCACACATTCGCCACATAAG
CCATACAGTGATAGCATGCAGCCACAACAAGCGGCATTGGCGGACGATGA
GAAGCTTCTCCAGATGCTGTATTGCAGCCTCAAGCGGGCCATCGCCCCTT
TGCACGAGACTGCAGGTCCAGATTCTCCGCGCACCCCAACACCCTCCCCT
CAGATCATCCCCTTGTTAAGTTTAGTCGTTCTCGATGATAAGGGCCACGA
CGAAACCCTTCTCCTCACCCAGAATCACCCCCTAAGTCAAAAGAACCCAC
TAACACTGGATCCTGCCCTGCAAACAAGTAGCACCAACACCCGCGCCCTG
GCGAGCCACTTGAATCAGGAGTTGCATCTTGCTATGCAGGCAGACATTCC
CTTAGGTGCCCGCGCCTACGAAATTTCCCAAGCCGCCTTGTGCCTGCGAA
TCGCGCTCATGGAATCTACGGGAGTGGGAGAGCGTGATACCGACACAAGC
AGGGGGCCAAATATGATGCAGCAGCACGAGAGGCTACAGCCACAGCTACA
GGAACAACAGCAGCAATCGCATCAGCAGCCAGGTGTGGCGGCGTCCGAAG
GCTCACTAGCATCTGACTCGCTCATGCAGAGGAAACGGCTGAAGACAAGG
CAGAGTGAGGCCACGGGAAATTGTGCAGGGCAAGGACAGGAGGAAGGGGA
TGAGAACGACGAAGATGAGTGGTACCACAGGAACAAGGGGGCCAAGCCAC
TGTCACCAGTTGATTTCAAAATGGTGGTTGGCGTATTATTTTCCCTTCAT
ATCTTGGTGACCCAAGGGCCCCTGAATCTTGTCTTATTTCTGGTGGCCTA
CTTAGTCATGTCCGCAGTTGTTAAGATGTTGCTGGCGATTATGTCTTGA

Synonyms

Publications