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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:771037..773878 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G02810.1 vs.
Match: EWM25498.1 (LMBR1-like membrane protein [Nannochloropsis gaditana]) HSP 1 Score: 959.5 bits (2479), Expect = 5.100e-276 Identity = 500/637 (78.49%), Postives = 544/637 (85.40%), Query Frame = 0
Query: 1 MTADPEPVVLAVLLAFATFYLLRYYRSPDVSFSITLLIYTSWFLGFAGVVLLPFDLGDVQVYHRSLPWILQVWKGIYWSTFVLTWLVLPIVFSYLESGFFTPRDRFLDALRDQIRMAFFAVVALVGFAVYLLAQHYTLAGAEGLLMALGNTYGLLFVVVLLGNGLVEVPRKLWNSSFAEKELQRLYFKSSLVDSNLHDAVCVLSDVEAEVVALREHLRQAPQGGGREGGTAGEGTSPAAGTALLSEELALELDACMKVLMDTKSSFRHRPEDMTLGMLLPRTPFGVASIYDSSTGPPPTLARLAALHARLKKAQLRVQVLKKKRDAVIGRVEVIEAVSQGTLPYPSEIKMGDGEGCGARCGAWFAHLGALLEWHWLMTFSHCTLRLLAVVGWGLTVCFLWSQVFLGSPFALSPYGALQQAFGTSSPFAIQMTIAIPLAYVSLCTYRSLFKFKLFGEFSLQGPHQSLTGPLLVNAQYLIRLQFPLAYNFLLMLRSPSSKETAFRHLMSNMAVVPLLGRGFSTYAPLMMVVLALFTYFRGYARLLKLVGAYHEDLISGEEQEEMIAQGRSLARRRRYPLPSV---NAAGVGVLGVGGGGGG-GGKGGEGRKGSSGMRLQQEMLSGPIRGTNTAYTQLKT 634
M DPEP VLA+LLA ATFYLLRYYRSPDVS S+T+LIY SW LGFAGV LLP+DLGDVQVYHRSLPWIL+VWKGIYWSTF+LTWLVLPIVFSYLESG+FTPRDR LDALRDQ+RMAF A+VALVGF +YL+AQ YTLAGAEGLLMALGNTYGLLFVVVLLGNGLVEVPRKLW SSF ++EL+RLYF+SSLVDS+LHDAVCVLSDVEAEV ALRE LRQ+P G EELALELDACMK+L DT++SFRHRPEDMTLGMLLPRTPFGV S ++GPPP+LA LA LHARLKKAQLRVQVLKK+RDAVI +VEVIEAV QG LPYPS++K GDGEGC A GAW +HLG +L W+WL T SHCTLRLLA++GW LTVCFLWSQVFLGSP+ALSPYGA QQAFGTSSPFAIQ+ IA+PLAYVS+CTYRSLFKFKLFGEFSLQGPHQSL GPLLVNAQYLIRLQFPLAYNFLLMLRSPSSK+TAFRHLMSNMAVVPLLGRGFS YAPLMMVVLA FTYFRGYARLL+LVGAYHEDLISGEEQEEMI QGRSLARRRRYPLPS N G G G G G GG G+ + MR+QQE+ GP+RG+ AYTQLKT
Sbjct: 61 MDTDPEPAVLAILLALATFYLLRYYRSPDVSPSVTVLIYISWLLGFAGVFLLPYDLGDVQVYHRSLPWILKVWKGIYWSTFILTWLVLPIVFSYLESGYFTPRDRILDALRDQLRMAFIALVALVGFCIYLVAQRYTLAGAEGLLMALGNTYGLLFVVVLLGNGLVEVPRKLWKSSFPDQELKRLYFRSSLVDSDLHDAVCVLSDVEAEVSALREQLRQSPPAG---------------------EELALELDACMKILQDTRASFRHRPEDMTLGMLLPRTPFGVNS--HPTSGPPPSLAHLAGLHARLKKAQLRVQVLKKQRDAVISKVEVIEAVCQGALPYPSDVKAGDGEGCCAALGAWASHLGTVLAWYWLTTLSHCTLRLLAILGWFLTVCFLWSQVFLGSPYALSPYGAFQQAFGTSSPFAIQLAIAVPLAYVSICTYRSLFKFKLFGEFSLQGPHQSLAGPLLVNAQYLIRLQFPLAYNFLLMLRSPSSKQTAFRHLMSNMAVVPLLGRGFSVYAPLMMVVLAAFTYFRGYARLLRLVGAYHEDLISGEEQEEMIQQGRSLARRRRYPLPSAGGNNRPGRGEDGFASGSVSLSGSGGGGKATTGTMRVQQELPPGPLRGSTAAYTQLKT 674
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G02810.1 ID=NO10G02810.1|Name=NO10G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2124bp AACAGTACACGCGCGGATCGGCTCCTCATTGAGTTGTCGTTCGCCGGTGC AGCCGAGAGGAGCAAGCAAGCACTCGCTTCCGTAATAAGTCGCTTGCCTG CCCTGCGCAACTGACTTGCTTCGACGCTTGCCCTTTCTCCTGAAACCCGC CATGACCGCCGACCCCGAGCCTGTGGTGCTGGCGGTGCTCTTGGCCTTCG CCACCTTCTACTTACTTCGGTATTATCGGAGCCCGGATGTTTCCTTTTCC ATCACTCTTCTCATATACACGTCATGGTTCTTGGGATTTGCCGGTGTTGT ACTGTTACCATTTGACTTGGGTGATGTGCAGGTGTACCACCGTTCCCTCC CATGGATCTTGCAAGTCTGGAAAGGCATCTACTGGTCCACTTTCGTCCTG ACCTGGTTAGTGCTCCCCATTGTGTTTTCTTACCTCGAAAGCGGTTTTTT TACCCCTCGGGACCGGTTTCTGGACGCCTTGAGGGACCAAATCCGCATGG CCTTCTTCGCGGTGGTGGCCCTTGTGGGCTTCGCTGTTTATTTGCTCGCT CAACACTATACATTGGCGGGGGCTGAAGGTCTTCTAATGGCGTTGGGCAA TACCTATGGGCTCTTGTTTGTGGTTGTGTTGCTGGGGAATGGCCTTGTGG AGGTGCCGCGGAAATTGTGGAATTCTAGCTTTGCGGAGAAGGAGCTGCAA CGGCTTTATTTTAAAAGCTCGTTGGTAGATAGTAATTTGCATGATGCTGT GTGTGTGTTGTCGGATGTGGAGGCGGAGGTGGTGGCGTTGAGGGAGCATT TGAGACAAGCGCCGCAGGGAGGAGGGAGGGAGGGAGGGACTGCTGGAGAG GGGACGTCGCCTGCGGCGGGTACAGCGTTGTTGTCGGAAGAGTTGGCACT GGAGCTGGATGCGTGTATGAAGGTTTTGATGGACACCAAGTCTTCCTTTA GGCATCGACCGGAGGATATGACGTTGGGAATGCTTTTGCCGCGGACTCCC TTTGGGGTGGCGAGCATTTATGATTCATCCACTGGTCCTCCCCCCACGCT TGCGCGGCTTGCTGCCCTGCATGCCCGATTAAAAAAGGCACAGTTACGGG TGCAAGTGCTGAAGAAAAAGAGGGATGCAGTTATTGGGCGGGTGGAGGTG ATCGAAGCCGTGAGCCAGGGGACACTGCCGTATCCGAGTGAGATTAAGAT GGGGGATGGGGAGGGGTGTGGTGCACGATGCGGTGCGTGGTTTGCTCATT TGGGGGCCTTGCTGGAGTGGCACTGGCTCATGACGTTCTCGCATTGCACG CTGCGGTTGTTGGCTGTGGTGGGGTGGGGGTTGACGGTGTGCTTCTTGTG GAGTCAAGTGTTCTTGGGGTCGCCGTTTGCCTTGTCCCCCTACGGAGCAC TGCAGCAGGCGTTTGGAACGAGCTCTCCGTTTGCCATTCAGATGACGATT GCCATTCCACTTGCTTATGTGTCGTTGTGCACGTACCGATCTCTGTTCAA GTTTAAACTCTTTGGCGAATTCTCCCTACAAGGCCCGCACCAGTCCCTCA CTGGCCCTCTCCTTGTAAACGCCCAATACCTCATCCGGCTCCAGTTTCCC CTCGCCTACAACTTCCTCCTGATGCTCCGCTCCCCTTCCTCGAAAGAAAC GGCCTTCCGTCATTTGATGAGCAACATGGCGGTGGTCCCCCTTTTGGGAA GGGGGTTCTCGACCTACGCGCCTTTGATGATGGTGGTGCTGGCGTTGTTT ACGTACTTTAGGGGATATGCGAGGCTGTTGAAGCTGGTGGGGGCGTACCA CGAGGATTTGATCTCGGGGGAGGAGCAGGAGGAGATGATCGCTCAGGGAC GGAGTCTGGCACGAAGGAGGCGGTACCCGCTGCCGAGTGTTAATGCTGCG GGTGTTGGGGTCTTGGGAGTGGGTGGGGGAGGAGGAGGAGGAGGAAAAGG AGGTGAGGGAAGGAAGGGATCTTCGGGGATGAGGCTGCAGCAGGAGATGC TGTCGGGGCCAATAAGAGGAACGAATACGGCCTATACCCAATTGAAGACG TAGACAGGGACGGAGGGAGGGAGGGATGAACTAAAATTAGTTTTTGTATA GAAAAGAATAAAAAATGACGAGAA back to topprotein sequence of NO10G02810.1 >NO10G02810.1-protein ID=NO10G02810.1-protein|Name=NO10G02810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=634bp MTADPEPVVLAVLLAFATFYLLRYYRSPDVSFSITLLIYTSWFLGFAGVV LLPFDLGDVQVYHRSLPWILQVWKGIYWSTFVLTWLVLPIVFSYLESGFF TPRDRFLDALRDQIRMAFFAVVALVGFAVYLLAQHYTLAGAEGLLMALGN TYGLLFVVVLLGNGLVEVPRKLWNSSFAEKELQRLYFKSSLVDSNLHDAV CVLSDVEAEVVALREHLRQAPQGGGREGGTAGEGTSPAAGTALLSEELAL ELDACMKVLMDTKSSFRHRPEDMTLGMLLPRTPFGVASIYDSSTGPPPTL ARLAALHARLKKAQLRVQVLKKKRDAVIGRVEVIEAVSQGTLPYPSEIKM GDGEGCGARCGAWFAHLGALLEWHWLMTFSHCTLRLLAVVGWGLTVCFLW SQVFLGSPFALSPYGALQQAFGTSSPFAIQMTIAIPLAYVSLCTYRSLFK FKLFGEFSLQGPHQSLTGPLLVNAQYLIRLQFPLAYNFLLMLRSPSSKET AFRHLMSNMAVVPLLGRGFSTYAPLMMVVLALFTYFRGYARLLKLVGAYH EDLISGEEQEEMIAQGRSLARRRRYPLPSVNAAGVGVLGVGGGGGGGGKG GEGRKGSSGMRLQQEMLSGPIRGTNTAYTQLKT* back to topmRNA from alignment at chr10:771037..773878+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G02810.1 ID=NO10G02810.1|Name=NO10G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2842bp|location=Sequence derived from alignment at chr10:771037..773878+ (Nannochloropsis oceanica) AACAGTACACGCGCGGATCGGCTCCTCATTGAGTTGTCGTTCGCCGGTGC
AGCCGAGAGGAGCAAGCAAGCACTCGCTTCCGTAATAAGTCGCTTGCCTG
CCCTGCGCAACTGACTTGCTTCGACGCTTGCCCTTTCTCCTGAAACCCGC
CATGACCGCCGACCCCGAGCCTGTGGTGCTGGCGGTGCTCTTGGCCTTCG
CCACCTTCTACTTACTTCGGTACGTGGAAATTTTGGTAATGCCTGCGCTA
TCATCGTCTGTCTGCCTTCATCCGCGCACGACTCTGACCCCTCCGGTGGG
CCATGATGATGTGCTGAGGCTTGGCTTCCCTCCCCCCCATATACAAGCCC
AGGCTTGTTCAGCCCATAGTCGCAAAAGGACTTGTATTTGCACCAGCTCT
CCATGCAAAGTGACATCATGGACCGTGCTACCTTCCCCCAACCCACCTCA
CCCTGCTCTTCCCCCCCCCCCCACCTATTAGGTATTATCGGAGCCCGGAT
GTTTCCTTTTCCATCACTCTTCTCATATACACGTCATGGTTCTTGGGATT
TGCCGGTGTTGTACTGTTACCATTTGACTTGGGTGATGTGCAGGTGCGTA
AAGTGGATGGATATTGATGCCGATGGTTGTATGCTCGCTGATGCCGATAG
TGACATGTTCGTATGCTGGGTGCGGGGATTTATGTCCATGTCTGTATATA
ATTCTTCGTATGCGGCAACATTCTCATTGCGTGAGCGCTATGTATTCACT
GCTTATGTGATTGAGACAGACGCATCTCAGCTTTCACTTTGCCTCATCTG
TTGTCCTCAACCGCTCGCGTACGTCCATCCGCTTACCTTCCCCTCCTCGT
TCCTTCCCTCCCTTCCTCCCTCCCTCCATCAGGTGTACCACCGTTCCCTC
CCATGGATCTTGCAAGTCTGGAAAGGCATCTACTGGTCCACTTTCGTCCT
GACCTGGTTAGTGCTCCCCATTGTGTTTTCTTACCTCGAAAGCGGTTTTT
TTACCCCTCGGGACCGGTTTCTGGACGCCTTGAGGGACCAAATCCGCATG
GCCTTCTTCGCGGTGGTGGCCCTTGTGGGCTTCGCTGTTTATTTGCTCGC
TCAACACTATACATTGGCGGGGGCTGAAGGTCTTCTAATGGCGTTGGGCA
ATACCTATGGGCTCTTGTTTGTGGTTGTGTTGCTGGGGAATGGCCTTGTG
GAGGTGCCGCGGAAATTGTGGAATTCTAGCTTTGCGGAGAAGGAGCTGCA
ACGGCTTTATTTTAAAAGCTCGTTGGTAGATAGTAATTTGCATGATGCTG
TGTGTGTGTTGTCGGATGTGGAGGCGGAGGTGGTGGCGTTGAGGGAGCAT
TTGAGACAAGCGCCGCAGGGAGGAGGGAGGGAGGGAGGGACTGCTGGAGA
GGGGACGTCGCCTGCGGCGGGTACAGCGTTGTTGTCGGAAGAGTTGGCAC
TGGAGCTGGATGCGTGTATGAAGGTTTTGATGGACACCAAGTCTTCCTTT
AGGCATCGACCGGAGGATATGACGTTGGGAATGCTTTTGCCGCGGACTCC
CTTTGGGGTGGCGAGCATTTATGATTCATCCACTGGTCCTCCCCCCACGC
TTGCGCGGCTTGCTGCCCTGCATGCCCGATTAAAAAAGGCACAGTTACGG
GTGCAAGTGCTGAAGAAAAAGAGGGATGCAGTTATTGGGCGGGTGGAGGT
GATCGAAGCCGTGAGCCAGGGGACACTGCCGTATCCGAGTGAGATTAAGA
TGGGGGATGGGGAGGGGTGTGGTGCACGATGCGGTGCGTGGTTTGCTCAT
TTGGGGGCCTTGCTGGAGTGGCACTGGCTCATGACGTTCTCGCATTGCAC
GCTGCGGTTGTTGGCTGTGGTGGGGTGGGGGTTGACGGTGTGCTTCTTGT
GGAGTCAAGTGTTCTTGGGGTCGCCGTTTGCCTTGTCCCCCTACGGAGCA
CTGCAGCAGGCGTTTGGAACGAGCTCTCCGTTTGCCATTCAGATGACGAT
TGCCATTCCACTTGCTTATGTGTCGTTGTGCACGTACCGATCTCTGTTCA
AGTTTAAACTCTTTGGGTAAGGGCTTGGTTTCGTTCGCTTGTTCCTTCCC
CCCCTCCCCTCCCTCTTCCTCTTTTCATAAGTCATTTCACTCGTGTTTCA
TCTCCCTTCACCCTCCCCTTCCTTCTTTCCCCCCCCCTCCCTCTCTCCCT
CCGTACTCCCTCTCTCGCACATATACTATACAGCGAATTCTCCCTACAAG
GCCCGCACCAGTCCCTCACTGGCCCTCTCCTTGTAAACGCCCAATACCTC
ATCCGGCTCCAGTTTCCCCTCGCCTACAACTTCCTCCTGATGCTCCGCTC
CCCTTCCTCGAAAGAAACGGCCTTCCGTCATTTGATGAGCAACATGGCGG
TGGTCCCCCTTTTGGGAAGGGGGTTCTCGACCTACGCGCCTTTGATGATG
GTGGTGCTGGCGTTGTTTACGTACTTTAGGGGATATGCGAGGCTGTTGAA
GCTGGTGGGGGCGTACCACGAGGATTTGATCTCGGGGGAGGAGCAGGAGG
AGATGATCGCTCAGGGACGGAGTCTGGCACGAAGGAGGCGGTACCCGCTG
CCGAGTGTTAATGCTGCGGGTGTTGGGGTCTTGGGAGTGGGTGGGGGAGG
AGGAGGAGGAGGAAAAGGAGGTGAGGGAAGGAAGGGATCTTCGGGGATGA
GGCTGCAGCAGGAGATGCTGTCGGGGCCAATAAGAGGAACGAATACGGCC
TATACCCAATTGAAGACGTAGACAGGGACGGAGGGAGGGAGGGATGAACT
AAAATTAGTTTTTGTATAGAAAAGAATAAAAAATGACGAGAA back to topCoding sequence (CDS) from alignment at chr10:771037..773878+ >NO10G02810.1 ID=NO10G02810.1|Name=NO10G02810.1|organism=Nannochloropsis oceanica|type=CDS|length=1902bp|location=Sequence derived from alignment at chr10:771037..773878+ (Nannochloropsis oceanica) ATGACCGCCGACCCCGAGCCTGTGGTGCTGGCGGTGCTCTTGGCCTTCGC CACCTTCTACTTACTTCGGTATTATCGGAGCCCGGATGTTTCCTTTTCCA TCACTCTTCTCATATACACGTCATGGTTCTTGGGATTTGCCGGTGTTGTA CTGTTACCATTTGACTTGGGTGATGTGCAGGTGTACCACCGTTCCCTCCC ATGGATCTTGCAAGTCTGGAAAGGCATCTACTGGTCCACTTTCGTCCTGA CCTGGTTAGTGCTCCCCATTGTGTTTTCTTACCTCGAAAGCGGTTTTTTT ACCCCTCGGGACCGGTTTCTGGACGCCTTGAGGGACCAAATCCGCATGGC CTTCTTCGCGGTGGTGGCCCTTGTGGGCTTCGCTGTTTATTTGCTCGCTC AACACTATACATTGGCGGGGGCTGAAGGTCTTCTAATGGCGTTGGGCAAT ACCTATGGGCTCTTGTTTGTGGTTGTGTTGCTGGGGAATGGCCTTGTGGA GGTGCCGCGGAAATTGTGGAATTCTAGCTTTGCGGAGAAGGAGCTGCAAC GGCTTTATTTTAAAAGCTCGTTGGTAGATAGTAATTTGCATGATGCTGTG TGTGTGTTGTCGGATGTGGAGGCGGAGGTGGTGGCGTTGAGGGAGCATTT GAGACAAGCGCCGCAGGGAGGAGGGAGGGAGGGAGGGACTGCTGGAGAGG GGACGTCGCCTGCGGCGGGTACAGCGTTGTTGTCGGAAGAGTTGGCACTG GAGCTGGATGCGTGTATGAAGGTTTTGATGGACACCAAGTCTTCCTTTAG GCATCGACCGGAGGATATGACGTTGGGAATGCTTTTGCCGCGGACTCCCT TTGGGGTGGCGAGCATTTATGATTCATCCACTGGTCCTCCCCCCACGCTT GCGCGGCTTGCTGCCCTGCATGCCCGATTAAAAAAGGCACAGTTACGGGT GCAAGTGCTGAAGAAAAAGAGGGATGCAGTTATTGGGCGGGTGGAGGTGA TCGAAGCCGTGAGCCAGGGGACACTGCCGTATCCGAGTGAGATTAAGATG GGGGATGGGGAGGGGTGTGGTGCACGATGCGGTGCGTGGTTTGCTCATTT GGGGGCCTTGCTGGAGTGGCACTGGCTCATGACGTTCTCGCATTGCACGC TGCGGTTGTTGGCTGTGGTGGGGTGGGGGTTGACGGTGTGCTTCTTGTGG AGTCAAGTGTTCTTGGGGTCGCCGTTTGCCTTGTCCCCCTACGGAGCACT GCAGCAGGCGTTTGGAACGAGCTCTCCGTTTGCCATTCAGATGACGATTG CCATTCCACTTGCTTATGTGTCGTTGTGCACGTACCGATCTCTGTTCAAG TTTAAACTCTTTGGCGAATTCTCCCTACAAGGCCCGCACCAGTCCCTCAC TGGCCCTCTCCTTGTAAACGCCCAATACCTCATCCGGCTCCAGTTTCCCC TCGCCTACAACTTCCTCCTGATGCTCCGCTCCCCTTCCTCGAAAGAAACG GCCTTCCGTCATTTGATGAGCAACATGGCGGTGGTCCCCCTTTTGGGAAG GGGGTTCTCGACCTACGCGCCTTTGATGATGGTGGTGCTGGCGTTGTTTA CGTACTTTAGGGGATATGCGAGGCTGTTGAAGCTGGTGGGGGCGTACCAC GAGGATTTGATCTCGGGGGAGGAGCAGGAGGAGATGATCGCTCAGGGACG GAGTCTGGCACGAAGGAGGCGGTACCCGCTGCCGAGTGTTAATGCTGCGG GTGTTGGGGTCTTGGGAGTGGGTGGGGGAGGAGGAGGAGGAGGAAAAGGA GGTGAGGGAAGGAAGGGATCTTCGGGGATGAGGCTGCAGCAGGAGATGCT GTCGGGGCCAATAAGAGGAACGAATACGGCCTATACCCAATTGAAGACGT AG back to top
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