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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:750188..751684 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G02730.1 vs.
Match: EWM25487.1 (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana]) HSP 1 Score: 509.6 bits (1311), Expect = 1.100e-140 Identity = 319/497 (64.19%), Postives = 361/497 (72.64%), Query Frame = 0
Query: 1 MTTETTGTAVAELSVEEPVKEVEAPAAPTTTAAVPATPTAEGPADEAKVNEVAPV----ENPPV---KMKEIAAAAAPTATVAIPAKKEEVPAA----LAAPAPAAPLTAAQTSELKALMDFYFGAANWRRDKFLQGEAAKDPEGYVPLTVLLTFNKLKKLTTDSAIVVKALEQAPHSTLLTLNADKTAVKRTVASIPATGAEGGDAASDDSDKRTLFVDGIPKVPTDGAAEVTVDDIVSIFKALGPVDFVRLSRDKTSKKLTGAAFVEFPTVADAQKALAVEWKTHPVASLGGKTNVILRVRQYERDYKSKLSSGGAGAAVGQKRRAQEVEEGGEGGEGGEKKAKAVCDFDLPENFEKELAALVPRHVKFTGIKPGTLYYELREFFNKYGQVKYVSYVADSNVALIKFLLPETAAKFLGEGEKREVSEVVFKEEKLVAEAPTEEEVREQLLAKNARKRSNLENRGQGRREGGRHGGGGGGRGRGGGKGRGGGGRGR 487
MT ET AVA L + KE A T + P TPT +GPAD A+ +E A V EN +E AAA+ P+AT A+ E A A LT A +++K+LM+FYFGAANWRRDKFLQGEAAKDPEGYVPLTV L NKLKKLT+D A+VV+ALE+ P S+LL+L DK AVKRTV AT E G DDSD+RTLFVDGIPK+P DGA EVTVDDIV+IFKALGPVDFVRLSRDKTSKKLTGAAFVEFP VADAQ+ LAVEWK+ P+ +LGGKTNVILRVRQYERDYK+K+++ GA VG KR+ E G+GGE+K V DF+LPENFEKELA LVPRHVKFTGIK GT YYELREFFNKYG VKYV+Y DS+VAL+KFL ETAAKFL G+ EVS+VVFKEEKL APTE EVREQL AKNARKRSNLE RGQ RREGG+ GRG GG +GRG GGRGR
Sbjct: 62 MTAETE--AVAALETPQSTKE----EANVTAVSAPETPTTQGPADNAREDESASVNVNVENEAAGDASKREDAAASCPSATTTGEAESAETALADSVVTATTTTPGTLTDALANDIKSLMEFYFGAANWRRDKFLQGEAAKDPEGYVPLTVFLKCNKLKKLTSDPAVVVQALEREPVSSLLSLRGDKAAVKRTVVLALATEGEEG---KDDSDRRTLFVDGIPKIPVDGAKEVTVDDIVAIFKALGPVDFVRLSRDKTSKKLTGAAFVEFPNVADAQRVLAVEWKSRPIPTLGGKTNVILRVRQYERDYKNKVAAAQGGATVGSKRKTPE-------GDGGEEKKGGVYDFELPENFEKELATLVPRHVKFTGIKSGTQYYELREFFNKYGAVKYVTYQPDSDVALVKFLTAETAAKFL--GDTPEVSDVVFKEEKLGVVAPTEAEVREQLTAKNARKRSNLEARGQARREGGK------GRGGGGKRGRGAGGRGR 534
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G02730.1 ID=NO10G02730.1|Name=NO10G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp ATGACGACTGAAACGACGGGTACCGCCGTAGCGGAGTTGTCTGTTGAGGA ACCGGTCAAGGAAGTAGAGGCACCAGCGGCTCCCACCACAACTGCAGCAG TCCCCGCCACGCCGACGGCTGAAGGCCCCGCGGATGAAGCCAAGGTGAAT GAAGTTGCCCCGGTCGAAAATCCCCCCGTCAAGATGAAAGAGATTGCTGC TGCTGCTGCCCCCACTGCCACCGTGGCCATCCCCGCAAAGAAGGAGGAAG TCCCTGCTGCTCTTGCTGCTCCTGCTCCTGCCGCCCCGCTGACCGCCGCG CAGACATCGGAGCTCAAGGCTCTCATGGACTTCTACTTCGGCGCTGCCAA CTGGCGCCGGGACAAATTCCTTCAAGGCGAGGCTGCTAAGGATCCGGAGG GCTATGTCCCTTTAACCGTACTGTTGACATTTAATAAGCTCAAGAAACTC ACCACCGACTCCGCCATCGTGGTCAAAGCCTTGGAACAAGCCCCCCATAG CACACTGCTCACCTTGAACGCCGACAAGACGGCCGTGAAGCGCACTGTGG CTTCAATCCCCGCGACAGGAGCGGAGGGAGGAGATGCTGCTTCTGATGAC AGCGACAAGCGCACGTTGTTTGTCGACGGTATTCCCAAGGTTCCGACGGA CGGCGCGGCAGAAGTGACGGTCGATGATATTGTGAGCATTTTCAAGGCCT TGGGTCCTGTGGATTTCGTCAGGTTGTCCCGGGATAAGACGAGCAAGAAG CTGACGGGGGCGGCGTTTGTGGAGTTTCCCACTGTTGCGGATGCGCAGAA GGCATTGGCTGTGGAATGGAAGACGCACCCGGTAGCCAGCCTGGGGGGGA AGACGAATGTCATACTGCGTGTGCGGCAGTATGAACGGGATTACAAAAGC AAACTGTCTTCAGGGGGGGCTGGGGCGGCGGTGGGGCAAAAACGGAGGGC GCAAGAAGTAGAGGAGGGTGGGGAGGGAGGAGAAGGGGGGGAGAAAAAGG CAAAAGCGGTGTGTGATTTCGATTTGCCTGAAAACTTCGAGAAGGAGTTG GCCGCGCTTGTGCCTCGCCATGTAAAGTTTACGGGAATCAAGCCTGGTAC GCTTTATTACGAACTGAGGGAATTTTTTAATAAGTACGGACAAGTGAAGT ACGTCTCGTATGTGGCTGATTCGAATGTGGCGCTGATCAAGTTTTTGTTG CCCGAGACGGCGGCGAAGTTCTTGGGGGAGGGAGAGAAGAGGGAAGTGAG CGAGGTGGTGTTTAAGGAGGAGAAGCTCGTGGCGGAGGCACCGACGGAGG AAGAGGTCCGTGAGCAGTTACTAGCTAAGAATGCTCGGAAAAGGAGTAAC TTGGAAAATCGTGGGCAGGGGAGGCGGGAAGGAGGACGGCATGGTGGGGG AGGGGGAGGGCGAGGGAGGGGGGGAGGGAAGGGGAGGGGGGGTGGGGGGC GTGGTCGGGGGGGAGGGCGGGGACGTGGCGGAGGGCGACGTAATTAG back to topprotein sequence of NO10G02730.1 >NO10G02730.1-protein ID=NO10G02730.1-protein|Name=NO10G02730.1|organism=Nannochloropsis oceanica|type=polypeptide|length=499bp MTTETTGTAVAELSVEEPVKEVEAPAAPTTTAAVPATPTAEGPADEAKVN EVAPVENPPVKMKEIAAAAAPTATVAIPAKKEEVPAALAAPAPAAPLTAA QTSELKALMDFYFGAANWRRDKFLQGEAAKDPEGYVPLTVLLTFNKLKKL TTDSAIVVKALEQAPHSTLLTLNADKTAVKRTVASIPATGAEGGDAASDD SDKRTLFVDGIPKVPTDGAAEVTVDDIVSIFKALGPVDFVRLSRDKTSKK LTGAAFVEFPTVADAQKALAVEWKTHPVASLGGKTNVILRVRQYERDYKS KLSSGGAGAAVGQKRRAQEVEEGGEGGEGGEKKAKAVCDFDLPENFEKEL AALVPRHVKFTGIKPGTLYYELREFFNKYGQVKYVSYVADSNVALIKFLL PETAAKFLGEGEKREVSEVVFKEEKLVAEAPTEEEVREQLLAKNARKRSN LENRGQGRREGGRHGGGGGGRGRGGGKGRGGGGRGRGGGRGRGGGRRN* back to topmRNA from alignment at chr10:750188..751684- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G02730.1 ID=NO10G02730.1|Name=NO10G02730.1|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp|location=Sequence derived from alignment at chr10:750188..751684- (Nannochloropsis oceanica) ATGACGACTGAAACGACGGGTACCGCCGTAGCGGAGTTGTCTGTTGAGGA
ACCGGTCAAGGAAGTAGAGGCACCAGCGGCTCCCACCACAACTGCAGCAG
TCCCCGCCACGCCGACGGCTGAAGGCCCCGCGGATGAAGCCAAGGTGAAT
GAAGTTGCCCCGGTCGAAAATCCCCCCGTCAAGATGAAAGAGATTGCTGC
TGCTGCTGCCCCCACTGCCACCGTGGCCATCCCCGCAAAGAAGGAGGAAG
TCCCTGCTGCTCTTGCTGCTCCTGCTCCTGCCGCCCCGCTGACCGCCGCG
CAGACATCGGAGCTCAAGGCTCTCATGGACTTCTACTTCGGCGCTGCCAA
CTGGCGCCGGGACAAATTCCTTCAAGGCGAGGCTGCTAAGGATCCGGAGG
GCTATGTCCCTTTAACCGTACTGTTGACATTTAATAAGCTCAAGAAACTC
ACCACCGACTCCGCCATCGTGGTCAAAGCCTTGGAACAAGCCCCCCATAG
CACACTGCTCACCTTGAACGCCGACAAGACGGCCGTGAAGCGCACTGTGG
CTTCAATCCCCGCGACAGGAGCGGAGGGAGGAGATGCTGCTTCTGATGAC
AGCGACAAGCGCACGTTGTTTGTCGACGGTATTCCCAAGGTTCCGACGGA
CGGCGCGGCAGAAGTGACGGTCGATGATATTGTGAGCATTTTCAAGGCCT
TGGGTCCTGTGGATTTCGTCAGGTTGTCCCGGGATAAGACGAGCAAGAAG
CTGACGGGGGCGGCGTTTGTGGAGTTTCCCACTGTTGCGGATGCGCAGAA
GGCATTGGCTGTGGAATGGAAGACGCACCCGGTAGCCAGCCTGGGGGGGA
AGACGAATGTCATACTGCGTGTGCGGCAGTATGAACGGGATTACAAAAGC
AAACTGTCTTCAGGGGGGGCTGGGGCGGCGGTGGGGCAAAAACGGAGGGC
GCAAGAAGTAGAGGAGGGTGGGGAGGGAGGAGAAGGGGGGGAGAAAAAGG
CAAAAGCGGTGTGTGATTTCGATTTGCCTGAAAACTTCGAGAAGGAGTTG
GCCGCGCTTGTGCCTCGCCATGTAAAGTTTACGGGAATCAAGCCTGGTAC
GCTTTATTACGAACTGAGGGAATTTTTTAATAAGTACGGACAAGTGAAGT
ACGTCTCGTATGTGGCTGATTCGAATGTGGCGCTGATCAAGTTTTTGTTG
CCCGAGACGGCGGCGAAGTTCTTGGGGGAGGGAGAGAAGAGGGAAGTGAG
CGAGGTGGTGTTTAAGGAGGAGAAGCTCGTGGCGGAGGCACCGACGGAGG
AAGAGGTCCGTGAGCAGTTACTAGCTAAGAATGCTCGGAAAAGGAGTAAC
TTGGAAAATCGTGGGCAGGGGAGGCGGGAAGGAGGACGGCATGGTGGGGG
AGGGGGAGGGCGAGGGAGGGGGGGAGGGAAGGGGAGGGGGGGTGGGGGGC
GTGGTCGGGGGGGAGGGCGGGGACGTGGCGGAGGGCGACGTAATTAG back to topCoding sequence (CDS) from alignment at chr10:750188..751684- >NO10G02730.1 ID=NO10G02730.1|Name=NO10G02730.1|organism=Nannochloropsis oceanica|type=CDS|length=1497bp|location=Sequence derived from alignment at chr10:750188..751684- (Nannochloropsis oceanica) ATGACGACTGAAACGACGGGTACCGCCGTAGCGGAGTTGTCTGTTGAGGA ACCGGTCAAGGAAGTAGAGGCACCAGCGGCTCCCACCACAACTGCAGCAG TCCCCGCCACGCCGACGGCTGAAGGCCCCGCGGATGAAGCCAAGGTGAAT GAAGTTGCCCCGGTCGAAAATCCCCCCGTCAAGATGAAAGAGATTGCTGC TGCTGCTGCCCCCACTGCCACCGTGGCCATCCCCGCAAAGAAGGAGGAAG TCCCTGCTGCTCTTGCTGCTCCTGCTCCTGCCGCCCCGCTGACCGCCGCG CAGACATCGGAGCTCAAGGCTCTCATGGACTTCTACTTCGGCGCTGCCAA CTGGCGCCGGGACAAATTCCTTCAAGGCGAGGCTGCTAAGGATCCGGAGG GCTATGTCCCTTTAACCGTACTGTTGACATTTAATAAGCTCAAGAAACTC ACCACCGACTCCGCCATCGTGGTCAAAGCCTTGGAACAAGCCCCCCATAG CACACTGCTCACCTTGAACGCCGACAAGACGGCCGTGAAGCGCACTGTGG CTTCAATCCCCGCGACAGGAGCGGAGGGAGGAGATGCTGCTTCTGATGAC AGCGACAAGCGCACGTTGTTTGTCGACGGTATTCCCAAGGTTCCGACGGA CGGCGCGGCAGAAGTGACGGTCGATGATATTGTGAGCATTTTCAAGGCCT TGGGTCCTGTGGATTTCGTCAGGTTGTCCCGGGATAAGACGAGCAAGAAG CTGACGGGGGCGGCGTTTGTGGAGTTTCCCACTGTTGCGGATGCGCAGAA GGCATTGGCTGTGGAATGGAAGACGCACCCGGTAGCCAGCCTGGGGGGGA AGACGAATGTCATACTGCGTGTGCGGCAGTATGAACGGGATTACAAAAGC AAACTGTCTTCAGGGGGGGCTGGGGCGGCGGTGGGGCAAAAACGGAGGGC GCAAGAAGTAGAGGAGGGTGGGGAGGGAGGAGAAGGGGGGGAGAAAAAGG CAAAAGCGGTGTGTGATTTCGATTTGCCTGAAAACTTCGAGAAGGAGTTG GCCGCGCTTGTGCCTCGCCATGTAAAGTTTACGGGAATCAAGCCTGGTAC GCTTTATTACGAACTGAGGGAATTTTTTAATAAGTACGGACAAGTGAAGT ACGTCTCGTATGTGGCTGATTCGAATGTGGCGCTGATCAAGTTTTTGTTG CCCGAGACGGCGGCGAAGTTCTTGGGGGAGGGAGAGAAGAGGGAAGTGAG CGAGGTGGTGTTTAAGGAGGAGAAGCTCGTGGCGGAGGCACCGACGGAGG AAGAGGTCCGTGAGCAGTTACTAGCTAAGAATGCTCGGAAAAGGAGTAAC TTGGAAAATCGTGGGCAGGGGAGGCGGGAAGGAGGACGGCATGGTGGGGG AGGGGGAGGGCGAGGGAGGGGGGGAGGGAAGGGGAGGGGGGGTGGGGGGC GTGGTCGGGGGGGAGGGCGGGGACGTGGCGGAGGGCGACGTAATTAG back to top
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