|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:705729..708428 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G02580.1 vs.
Match: EWM25473.1 (hypothetical protein Naga_100207g5 [Nannochloropsis gaditana]) HSP 1 Score: 276.9 bits (707), Expect = 2.000e-70 Identity = 214/474 (45.15%), Postives = 265/474 (55.91%), Query Frame = 0
Query: 1 MNCSAQHFVAVVASWLTSVADPFSSSSSSSSSHDPASLSFSYAFHHSTPSAGEVAAASTAATEAHLQCGDSPRLPCGGLVEAEATVGAKRVGEYLVRLLDGEPLSVPSSTSSSSSFPSSLLSSSPSRLLQETALFGWVPAHAFVRRNMNASLFRGVSPADDAGEEEGR-EEGVRIEVGGGSGAGFQVFCEDILLVMAGGGGGGGVEGRLVPGGEGVTFSVGGGGGGGAQFRYALSTSKDGGAINTKSSSSSSSNSSNSSNSKSGN---AGKDKHTELLWPFCRLGNWTSVGGGGGCGTLNFNHNNELDAVDKQQQQQQQQQQQQKRKERPMSSPPEEANEKTSRPPPSSLTSLPPPPPPHPPVTILCGQELDAENIPSDAMEGKKRFQK----LRETLQCCLREGYTLRAVGGGGGGGGTAECCEKAQMGYGFSFEVVLQQQQMKGGEGEAGEVSGRKKTNEIGKKGGRKVGGR 467
+NCSAQHFVAVVASWL + + P S+S ++ P +SF+Y HHS PS GE AAA+ A E+ QCG+ PRL CG LVE EAT+GAKR+GEYLVRLL GE LS PS+ LLQET+ FGW+PAHAFV+R++ + V G+E+ + + RIE GGGSGAGFQV+C LLV AGGGGGGGVEGRL+ +G ++S+GGGGGGGAQ+R S + + K GN AG+ + ++ RLG WTSVGGGGGCGT L +++ QQ Q ++ A++ PS+ T V ILCGQ LDA GKK K L TLQ CLREG LR GGGGGGGGTAECCE Q+GYGFSFEVVL++ G G A GR+ + GGR + GR
Sbjct: 15 LNCSAQHFVAVVASWLVTASTP---STSQNTIEFPTYMSFNYTMHHSPPSLGEKAAAAEALAESQTQCGNVPRLACGALVEDEATIGAKRLGEYLVRLLRGESLSAPST------------------LLQETSAFGWLPAHAFVQRHLGEA--DHVHSWPKMGKEQLKPRKAFRIEGGGGSGAGFQVYCGRSLLVSAGGGGGGGVEGRLLLRKKGRSYSMGGGGGGGAQYRCL-------------EGLSGEEDDAVGKGEKRGNVREAGEQQKQKI--SLNRLGKWTSVGGGGGCGTER-GGTERLHVAGLGREESQQGQNPRRAY----------ASQSDGGSHPSNATG---------DVGILCGQALDA------GTPGKKELDKGARALAATLQWCLREGQALRMTGGGGGGGGTAECCEPMQLGYGFSFEVVLER-----GGGRARRGEGREP-----RWGGRGLEGR 414
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G02580.1 ID=NO10G02580.1|Name=NO10G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2700bp ATGAACTGCAGTGCCCAGCATTTCGTTGCCGTCGTGGCGTCGTGGCTGAC GTCTGTGGCTGACCCCTTCTCATCTTCCTCCTCTTCCTCGTCCTCCCATG ACCCCGCCTCCCTCTCCTTTTCCTATGCCTTTCATCACTCCACTCCCTCA GCCGGAGAAGTCGCCGCGGCCAGTACAGCCGCCACCGAGGCCCACTTACA GTGCGGGGACAGCCCACGACTGCCATGTGGAGGCTTGGTCGAAGCTGAGG CTACTGTGGGGGCCAAGCGCGTGGGCGAGTACTTGGTGAGGTTACTAGAT GGAGAGCCCTTGTCAGTACCGTCCTCCACCTCCTCTTCCTCCTCATTCCC TTCATCATTGTTGTCATCTTCTCCCTCGAGGCTACTGCAAGAGACTGCAT TGTTTGGTTGGGTCCCTGCACATGCCTTTGTCAGACGGAATATGAATGCC TCCCTTTTTCGGGGAGTTTCTCCCGCAGACGATGCAGGCGAGGAGGAAGG GAGGGAGGAAGGGGTGCGAATTGAAGTGGGTGGAGGAAGCGGGGCTGGCT TCCAGGTGTTTTGTGAGGACATACTTTTGGTGATGGCTGGTGGGGGAGGA GGAGGAGGGGTAGAGGGAAGGCTGGTGCCTGGAGGGGAGGGGGTGACTTT CTCAGTGGGTGGTGGTGGAGGAGGAGGTGCACAATTTCGATATGCCTTAA GCACAAGCAAGGACGGAGGAGCAATTAATACGAAAAGCAGCAGTAGTAGC AGCAGCAACAGCAGCAACAGCAGCAACAGCAAAAGTGGAAACGCTGGGAA GGACAAGCACACGGAGCTGCTATGGCCGTTCTGTCGTCTGGGGAATTGGA CGTCTGTCGGTGGTGGGGGTGGATGCGGCACTCTTAACTTCAATCATAAT AACGAACTTGATGCGGTCGATAAGCAGCAGCAGCAGCAGCAGCAGCAGCA ACAACAACAAAAACGAAAAGAACGACCTATGTCGTCGCCCCCAGAAGAAG CAAACGAGAAGACCTCAAGGCCTCCTCCTTCTTCCCTCACTTCTCTTCCT CCGCCTCCTCCACCTCACCCTCCTGTCACCATCCTATGCGGCCAAGAGCT CGACGCCGAGAACATCCCAAGTGATGCAATGGAGGGGAAGAAAAGATTCC AAAAATTACGGGAAACACTTCAGTGTTGCCTAAGAGAGGGCTACACGCTC CGAGCGGTAGGAGGGGGAGGAGGGGGTGGGGGAACTGCGGAGTGCTGTGA GAAGGCACAGATGGGGTATGGATTTTCCTTTGAGGTGGTGTTGCAGCAGC AACAGATGAAAGGTGGAGAAGGAGAAGCAGGAGAAGTATCTGGGAGGAAG AAGACGAATGAGATTGGTAAGAAAGGAGGGAGGAAGGTGGGAGGGAGGAA AGAAAAGATGAAGCCTAAGCATGGGGACGGGAGCGTAACGCATGAAGAGC ACCGGCAGCATCGTATGCAAGAAGAGCTAGCACCACCACCACCGCCAGCA GCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAAC ACCACCACCACCACCACCAACAACAACAACAACATTAGCAGCAGCATTAC CCTACAGTAGCAGCACCACCACGACCAATCCTGACGCCGCTGCAACTGCT GCTTCTATTGGTGACGCTGCCACCAATGGGACTGAGGAAGGCGACGACAA CAATGACGACGACGATGCATCAACAGCTGCCCTCAACGCCCAACTTCGCT ACGACCCTCTCTTCAAGTACCTCCATCAAGCCGCCCTTTCCTGTCCCGGG GGATTTCAAGATTGGTGCTGTGTCTGCACACGAGCCAAAAACATGATAAT CCAGATTCAAGAAGAGAAGGGAAAGACGGAGGAAGAGGGGGAGCGGATGA AGAATAGCAACGTGGCCTGGTTTGCGAATGTTACCTGCTGTAGGAGAAAA GGGGATACAGCTGTCGCTCCTGCTGATCCTGCTGCTTCTGCTTTGTCGCC AATAGCAGGGAGCACCCACCCTTGGCACCCTGAGGACGACCTTCCATTTT ATCCGCCACCGCGCCCTTTAACCGGCGCTGCTGCTGCTGCTGCTGCTGCC GCTGCTTCTGGAAGGAGGCGGGAAAGAGTAGGATGTGCGCTGCAAATGGA TGAGAGAAGGGGAGGGTTGATGGTTATTGCTGCTGCTGCTCCTGTAACTA CTGCTGCTGCTTCTGCTTTACTCGAGATGAAAGAAGAAAGAGAGCAAGCG ACTCTTTGGCAGATTGGCGCGGACAGAAAGCATTTATCTCCGCTTTCCTC CTCTTCTCTCCCTTCCTCTTACTCCTCATCCTCGTCCTCGTCGACGACGA CGGTGGGATCCGTGAGTACGTGGACGTGTTTCCTAATCTTGAGCAGTCTC CTTCTGGTGATGGGTGGCGTCGTCCTCAGCTGGCGCGTGCACCAAGGGAG GATAAAGAGAGAGAAAGAGGGCGTGAGAAACGAAGAGGACGGGGAGGAAG GAGAAAGTGCTCATTTGATGTTGCGTGTTTGGCCCCAGAAGCAGATATAT GATGCTCTTTGATATATCTATTTATGCGCTTAAAGCAGAAGACAAAGACG AAATGTATAGATTGAAATGCTTGAGAAATATACCACGACGCTGGCCATGT GCCCGAAGCCCTGCGACAAGGGAAATGAATAAATTATGTCATACCGAGGA back to topprotein sequence of NO10G02580.1 >NO10G02580.1-protein ID=NO10G02580.1-protein|Name=NO10G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=854bp MNCSAQHFVAVVASWLTSVADPFSSSSSSSSSHDPASLSFSYAFHHSTPS AGEVAAASTAATEAHLQCGDSPRLPCGGLVEAEATVGAKRVGEYLVRLLD GEPLSVPSSTSSSSSFPSSLLSSSPSRLLQETALFGWVPAHAFVRRNMNA SLFRGVSPADDAGEEEGREEGVRIEVGGGSGAGFQVFCEDILLVMAGGGG GGGVEGRLVPGGEGVTFSVGGGGGGGAQFRYALSTSKDGGAINTKSSSSS SSNSSNSSNSKSGNAGKDKHTELLWPFCRLGNWTSVGGGGGCGTLNFNHN NELDAVDKQQQQQQQQQQQQKRKERPMSSPPEEANEKTSRPPPSSLTSLP PPPPPHPPVTILCGQELDAENIPSDAMEGKKRFQKLRETLQCCLREGYTL RAVGGGGGGGGTAECCEKAQMGYGFSFEVVLQQQQMKGGEGEAGEVSGRK KTNEIGKKGGRKVGGRKEKMKPKHGDGSVTHEEHRQHRMQEELAPPPPPA ATAAAAAAAAAAAATTTPPPPPPTTTTTLAAALPYSSSTTTTNPDAAATA ASIGDAATNGTEEGDDNNDDDDASTAALNAQLRYDPLFKYLHQAALSCPG GFQDWCCVCTRAKNMIIQIQEEKGKTEEEGERMKNSNVAWFANVTCCRRK GDTAVAPADPAASALSPIAGSTHPWHPEDDLPFYPPPRPLTGAAAAAAAA AASGRRRERVGCALQMDERRGGLMVIAAAAPVTTAAASALLEMKEEREQA TLWQIGADRKHLSPLSSSSLPSSYSSSSSSSTTTVGSVSTWTCFLILSSL LLVMGGVVLSWRVHQGRIKREKEGVRNEEDGEEGESAHLMLRVWPQKQIY DAL* back to topmRNA from alignment at chr10:705729..708428+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G02580.1 ID=NO10G02580.1|Name=NO10G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2700bp|location=Sequence derived from alignment at chr10:705729..708428+ (Nannochloropsis oceanica) ATGAACTGCAGTGCCCAGCATTTCGTTGCCGTCGTGGCGTCGTGGCTGAC
GTCTGTGGCTGACCCCTTCTCATCTTCCTCCTCTTCCTCGTCCTCCCATG
ACCCCGCCTCCCTCTCCTTTTCCTATGCCTTTCATCACTCCACTCCCTCA
GCCGGAGAAGTCGCCGCGGCCAGTACAGCCGCCACCGAGGCCCACTTACA
GTGCGGGGACAGCCCACGACTGCCATGTGGAGGCTTGGTCGAAGCTGAGG
CTACTGTGGGGGCCAAGCGCGTGGGCGAGTACTTGGTGAGGTTACTAGAT
GGAGAGCCCTTGTCAGTACCGTCCTCCACCTCCTCTTCCTCCTCATTCCC
TTCATCATTGTTGTCATCTTCTCCCTCGAGGCTACTGCAAGAGACTGCAT
TGTTTGGTTGGGTCCCTGCACATGCCTTTGTCAGACGGAATATGAATGCC
TCCCTTTTTCGGGGAGTTTCTCCCGCAGACGATGCAGGCGAGGAGGAAGG
GAGGGAGGAAGGGGTGCGAATTGAAGTGGGTGGAGGAAGCGGGGCTGGCT
TCCAGGTGTTTTGTGAGGACATACTTTTGGTGATGGCTGGTGGGGGAGGA
GGAGGAGGGGTAGAGGGAAGGCTGGTGCCTGGAGGGGAGGGGGTGACTTT
CTCAGTGGGTGGTGGTGGAGGAGGAGGTGCACAATTTCGATATGCCTTAA
GCACAAGCAAGGACGGAGGAGCAATTAATACGAAAAGCAGCAGTAGTAGC
AGCAGCAACAGCAGCAACAGCAGCAACAGCAAAAGTGGAAACGCTGGGAA
GGACAAGCACACGGAGCTGCTATGGCCGTTCTGTCGTCTGGGGAATTGGA
CGTCTGTCGGTGGTGGGGGTGGATGCGGCACTCTTAACTTCAATCATAAT
AACGAACTTGATGCGGTCGATAAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAACAACAAAAACGAAAAGAACGACCTATGTCGTCGCCCCCAGAAGAAG
CAAACGAGAAGACCTCAAGGCCTCCTCCTTCTTCCCTCACTTCTCTTCCT
CCGCCTCCTCCACCTCACCCTCCTGTCACCATCCTATGCGGCCAAGAGCT
CGACGCCGAGAACATCCCAAGTGATGCAATGGAGGGGAAGAAAAGATTCC
AAAAATTACGGGAAACACTTCAGTGTTGCCTAAGAGAGGGCTACACGCTC
CGAGCGGTAGGAGGGGGAGGAGGGGGTGGGGGAACTGCGGAGTGCTGTGA
GAAGGCACAGATGGGGTATGGATTTTCCTTTGAGGTGGTGTTGCAGCAGC
AACAGATGAAAGGTGGAGAAGGAGAAGCAGGAGAAGTATCTGGGAGGAAG
AAGACGAATGAGATTGGTAAGAAAGGAGGGAGGAAGGTGGGAGGGAGGAA
AGAAAAGATGAAGCCTAAGCATGGGGACGGGAGCGTAACGCATGAAGAGC
ACCGGCAGCATCGTATGCAAGAAGAGCTAGCACCACCACCACCGCCAGCA
GCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAAC
ACCACCACCACCACCACCAACAACAACAACAACATTAGCAGCAGCATTAC
CCTACAGTAGCAGCACCACCACGACCAATCCTGACGCCGCTGCAACTGCT
GCTTCTATTGGTGACGCTGCCACCAATGGGACTGAGGAAGGCGACGACAA
CAATGACGACGACGATGCATCAACAGCTGCCCTCAACGCCCAACTTCGCT
ACGACCCTCTCTTCAAGTACCTCCATCAAGCCGCCCTTTCCTGTCCCGGG
GGATTTCAAGATTGGTGCTGTGTCTGCACACGAGCCAAAAACATGATAAT
CCAGATTCAAGAAGAGAAGGGAAAGACGGAGGAAGAGGGGGAGCGGATGA
AGAATAGCAACGTGGCCTGGTTTGCGAATGTTACCTGCTGTAGGAGAAAA
GGGGATACAGCTGTCGCTCCTGCTGATCCTGCTGCTTCTGCTTTGTCGCC
AATAGCAGGGAGCACCCACCCTTGGCACCCTGAGGACGACCTTCCATTTT
ATCCGCCACCGCGCCCTTTAACCGGCGCTGCTGCTGCTGCTGCTGCTGCC
GCTGCTTCTGGAAGGAGGCGGGAAAGAGTAGGATGTGCGCTGCAAATGGA
TGAGAGAAGGGGAGGGTTGATGGTTATTGCTGCTGCTGCTCCTGTAACTA
CTGCTGCTGCTTCTGCTTTACTCGAGATGAAAGAAGAAAGAGAGCAAGCG
ACTCTTTGGCAGATTGGCGCGGACAGAAAGCATTTATCTCCGCTTTCCTC
CTCTTCTCTCCCTTCCTCTTACTCCTCATCCTCGTCCTCGTCGACGACGA
CGGTGGGATCCGTGAGTACGTGGACGTGTTTCCTAATCTTGAGCAGTCTC
CTTCTGGTGATGGGTGGCGTCGTCCTCAGCTGGCGCGTGCACCAAGGGAG
GATAAAGAGAGAGAAAGAGGGCGTGAGAAACGAAGAGGACGGGGAGGAAG
GAGAAAGTGCTCATTTGATGTTGCGTGTTTGGCCCCAGAAGCAGATATAT
GATGCTCTTTGATATATCTATTTATGCGCTTAAAGCAGAAGACAAAGACG
AAATGTATAGATTGAAATGCTTGAGAAATATACCACGACGCTGGCCATGT
GCCCGAAGCCCTGCGACAAGGGAAATGAATAAATTATGTCATACCGAGGA
back to topCoding sequence (CDS) from alignment at chr10:705729..708428+ >NO10G02580.1 ID=NO10G02580.1|Name=NO10G02580.1|organism=Nannochloropsis oceanica|type=CDS|length=2562bp|location=Sequence derived from alignment at chr10:705729..708428+ (Nannochloropsis oceanica) ATGAACTGCAGTGCCCAGCATTTCGTTGCCGTCGTGGCGTCGTGGCTGAC GTCTGTGGCTGACCCCTTCTCATCTTCCTCCTCTTCCTCGTCCTCCCATG ACCCCGCCTCCCTCTCCTTTTCCTATGCCTTTCATCACTCCACTCCCTCA GCCGGAGAAGTCGCCGCGGCCAGTACAGCCGCCACCGAGGCCCACTTACA GTGCGGGGACAGCCCACGACTGCCATGTGGAGGCTTGGTCGAAGCTGAGG CTACTGTGGGGGCCAAGCGCGTGGGCGAGTACTTGGTGAGGTTACTAGAT GGAGAGCCCTTGTCAGTACCGTCCTCCACCTCCTCTTCCTCCTCATTCCC TTCATCATTGTTGTCATCTTCTCCCTCGAGGCTACTGCAAGAGACTGCAT TGTTTGGTTGGGTCCCTGCACATGCCTTTGTCAGACGGAATATGAATGCC TCCCTTTTTCGGGGAGTTTCTCCCGCAGACGATGCAGGCGAGGAGGAAGG GAGGGAGGAAGGGGTGCGAATTGAAGTGGGTGGAGGAAGCGGGGCTGGCT TCCAGGTGTTTTGTGAGGACATACTTTTGGTGATGGCTGGTGGGGGAGGA GGAGGAGGGGTAGAGGGAAGGCTGGTGCCTGGAGGGGAGGGGGTGACTTT CTCAGTGGGTGGTGGTGGAGGAGGAGGTGCACAATTTCGATATGCCTTAA GCACAAGCAAGGACGGAGGAGCAATTAATACGAAAAGCAGCAGTAGTAGC AGCAGCAACAGCAGCAACAGCAGCAACAGCAAAAGTGGAAACGCTGGGAA GGACAAGCACACGGAGCTGCTATGGCCGTTCTGTCGTCTGGGGAATTGGA CGTCTGTCGGTGGTGGGGGTGGATGCGGCACTCTTAACTTCAATCATAAT AACGAACTTGATGCGGTCGATAAGCAGCAGCAGCAGCAGCAGCAGCAGCA ACAACAACAAAAACGAAAAGAACGACCTATGTCGTCGCCCCCAGAAGAAG CAAACGAGAAGACCTCAAGGCCTCCTCCTTCTTCCCTCACTTCTCTTCCT CCGCCTCCTCCACCTCACCCTCCTGTCACCATCCTATGCGGCCAAGAGCT CGACGCCGAGAACATCCCAAGTGATGCAATGGAGGGGAAGAAAAGATTCC AAAAATTACGGGAAACACTTCAGTGTTGCCTAAGAGAGGGCTACACGCTC CGAGCGGTAGGAGGGGGAGGAGGGGGTGGGGGAACTGCGGAGTGCTGTGA GAAGGCACAGATGGGGTATGGATTTTCCTTTGAGGTGGTGTTGCAGCAGC AACAGATGAAAGGTGGAGAAGGAGAAGCAGGAGAAGTATCTGGGAGGAAG AAGACGAATGAGATTGGTAAGAAAGGAGGGAGGAAGGTGGGAGGGAGGAA AGAAAAGATGAAGCCTAAGCATGGGGACGGGAGCGTAACGCATGAAGAGC ACCGGCAGCATCGTATGCAAGAAGAGCTAGCACCACCACCACCGCCAGCA GCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAAC ACCACCACCACCACCACCAACAACAACAACAACATTAGCAGCAGCATTAC CCTACAGTAGCAGCACCACCACGACCAATCCTGACGCCGCTGCAACTGCT GCTTCTATTGGTGACGCTGCCACCAATGGGACTGAGGAAGGCGACGACAA CAATGACGACGACGATGCATCAACAGCTGCCCTCAACGCCCAACTTCGCT ACGACCCTCTCTTCAAGTACCTCCATCAAGCCGCCCTTTCCTGTCCCGGG GGATTTCAAGATTGGTGCTGTGTCTGCACACGAGCCAAAAACATGATAAT CCAGATTCAAGAAGAGAAGGGAAAGACGGAGGAAGAGGGGGAGCGGATGA AGAATAGCAACGTGGCCTGGTTTGCGAATGTTACCTGCTGTAGGAGAAAA GGGGATACAGCTGTCGCTCCTGCTGATCCTGCTGCTTCTGCTTTGTCGCC AATAGCAGGGAGCACCCACCCTTGGCACCCTGAGGACGACCTTCCATTTT ATCCGCCACCGCGCCCTTTAACCGGCGCTGCTGCTGCTGCTGCTGCTGCC GCTGCTTCTGGAAGGAGGCGGGAAAGAGTAGGATGTGCGCTGCAAATGGA TGAGAGAAGGGGAGGGTTGATGGTTATTGCTGCTGCTGCTCCTGTAACTA CTGCTGCTGCTTCTGCTTTACTCGAGATGAAAGAAGAAAGAGAGCAAGCG ACTCTTTGGCAGATTGGCGCGGACAGAAAGCATTTATCTCCGCTTTCCTC CTCTTCTCTCCCTTCCTCTTACTCCTCATCCTCGTCCTCGTCGACGACGA CGGTGGGATCCGTGAGTACGTGGACGTGTTTCCTAATCTTGAGCAGTCTC CTTCTGGTGATGGGTGGCGTCGTCCTCAGCTGGCGCGTGCACCAAGGGAG GATAAAGAGAGAGAAAGAGGGCGTGAGAAACGAAGAGGACGGGGAGGAAG GAGAAAGTGCTCATTTGATGTTGCGTGTTTGGCCCCAGAAGCAGATATAT GATGCTCTTTGA back to top
|