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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:417717..420070 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G01420.1 vs.
Match: EWM25357.1 (poly (adp-ribose) polymerase member 8 [Nannochloropsis gaditana]) HSP 1 Score: 252.3 bits (643), Expect = 4.300e-63 Identity = 153/324 (47.22%), Postives = 191/324 (58.95%), Query Frame = 0
Query: 360 DLPCMVFPLHHAQDSRFTALSERHGTCYGFHGSPPINFFSIVSLGLRSLSGTKGMKNGAVFGDGVYVASKCEVARNFGGWGVPVWRHSRFG------VVPGGKGGAPLFAYQIIALCEVINLPQYRCGLTGGGSSGTPAPSTSTFSSDFFSSSSSCPTTRQRRRGSNGTSSSSSSSSSSSSSSSSSSSSSSSKSSSSSEYWVVGDDTHLVVRALLLFKDPAVLRGPQPLPASSSSANTVMTPLQNNNINVLQQQQCP---INPQHRPFHPLPRPPVAQRHIYLQFIVWTVRVMLFGVALIIFLETVENLWVHRGASWGVGKDRK 675
D PC +FPL HA ++RF AL+ +HGT +GFHGS P +F SIVS GLRSLSGT+GM+NGA FGDGVYVASKCEVARNFG WGVPVW+HS+FG G P+FAYQ+IALCE+I++P+YRCG G S S+ T R+R TS+ SS + + SEYWVV +D+HLVVRALLLFKDPA+L P S+ + V Q++ P N +P PLPR PVA+R +YL F++ +RV+L G A IIFLETVE L R S G G+ R+
Sbjct: 436 DRPCFIFPLRHAPNARFDALARQHGTQWGFHGSSPGSFHSIVSWGLRSLSGTRGMRNGAAFGDGVYVASKCEVARNFGSWGVPVWKHSQFGNRATASSAAAASGAPPVFAYQVIALCEIIDMPEYRCGFPG-------------------SDGSAVAVTAARQRSEPSTSTPVSSPT-------------REVNRDRSEYWVVANDSHLVVRALLLFKDPAILPNAPTFPLSTRT--------------VRQRRGSPGAAANLPPQPSPPLPRAPVARRQLYLHFVLGVMRVILMGTAFIIFLETVEKLLARREKSLGGGRGRR 713
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G01420.1 ID=NO10G01420.1|Name=NO10G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2136bp ACTACAGTCACACACAGGAAGTAAGCTGCAACAAGCCTCAACTCTCGCTT CTCCAACAATCACCGGCACAAGCAGCAGTTCTCATCCACCATGGCGGCGT CAGAAACTGAGGTGGAGTCCTGCTTGATCAGCAAGGAGGTAGCGCACGTC CTGGCGGTGCTGGCGATGCGCAATAACCCTATGAAGGAGGACTCACTGAA GCAAATCGGATCCATCCAAGCCTCTTCCTCCTCCAGCTCCTTCTCCTCCT CCCAATCATACTCCTCCTCTCCCTCCCTCACCATCGAAATTCAACGTCTA GAATGGCTCCCCCAGAAGCGGACACTTTATCTAGCCGCCTACCCTGAGGT CAATCTCTACGCCTCTTCCTCCTCCTCCTCTTTCCCTCTCGAGCTCACCC GAGCCCAACAGCTCCTCCTCTCTCCTCCGGTGGTGCTCGAGATTTATTTT CCCAATTTATCTTCCGAGCCACCCTTCTGCTTTTCCACTTCAGATGCTGG CGCGTTGGTCGCAGAGCGGGTGAACAGCAGCGGTAGCCTCTTGCCTCTAG ATCGATCGTCATTATTGCATGCCGTGTCCAAAATTACTGCGATTATCAAG CAGGAAGTGGATAGCATTTGGCCGCCGGAGTTGAGTGGAGAAGACGAGGG TGGGAGGGTGGGAAGGAGGGAGGGTGGGGTGGATTACCGGAGGGACTTTG CTCGTGCGATTAATGAATATTTAGAGAAGCACTTGGTGGCGGCTGACTTG ATGGTGTCATTGTTGAGTATGAGTAAGATGCACCATAACCCCACAATTAA AGCACCGGTGCCCAGATTCTTCTATCAGCGAGAAGGGAGTTTTATGATCA ATCAATCGGCGTTGTCTTCGGCAATAGCGGCGATTCCACCCTTGGAGGTA TTGAGGGAGAGTGGGACGGAAGAGGAGCGAGGGGCAAGGGGGTTGCCATT TGGGAGTTGTGTGTTGTTGCATCACTTGTTTTTCCGGGAGCGGGTGACGG TGGTGGATGGGAGGGAGGCAGGGAGGGAGGGAGGATTGCGGACCGTAGGA CAGAGTCCTGCTTCGTCACTGTTGCAGCCAGAACAATCTCCCCCCTCCCC TTACTCCTCTCCCTCCTTAATCACCACCCTCTTCTCTAAAGCCGGCTTTA ACACCGCCTCCTCGACCGATCTCCCGTGCATGGTATTTCCGCTGCATCAT GCCCAAGACTCGCGCTTCACCGCCCTTTCTGAGAGACACGGGACTTGCTA CGGCTTCCACGGCTCCCCCCCCATCAACTTCTTCTCAATCGTTTCCCTGG GCTTGAGATCGTTAAGTGGCACAAAAGGGATGAAGAATGGGGCAGTTTTC GGCGATGGGGTGTATGTGGCCTCGAAATGCGAGGTGGCGAGGAATTTTGG TGGGTGGGGAGTCCCGGTGTGGAGGCATAGCCGCTTTGGGGTCGTCCCCG GGGGAAAGGGAGGTGCACCTTTGTTTGCGTATCAGATTATTGCCTTGTGT GAAGTTATTAACTTGCCGCAGTATCGGTGTGGGTTGACGGGAGGGGGCAG CAGTGGCACACCAGCGCCTTCCACTTCTACCTTTTCCTCCGACTTTTTTT CATCTTCTTCGAGCTGTCCCACTACGAGGCAGCGCCGACGAGGGAGCAAC GGCACGAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCAGTAGCAGCAG TAGCAGCAGTAGCAGCAGTAGCAGCAAGAGCAGCAGCAGCAGTGAGTACT GGGTTGTCGGTGACGACACCCACCTCGTTGTCCGCGCTCTCCTTCTCTTC AAAGACCCCGCTGTTCTCCGTGGTCCCCAGCCTCTTCCTGCATCCTCCTC TTCTGCCAATACCGTCATGACGCCGCTTCAAAACAATAATATCAATGTAC TGCAACAACAGCAATGCCCGATCAACCCGCAACACCGTCCTTTTCACCCC TTACCTCGTCCTCCCGTTGCACAACGACACATTTACTTGCAATTTATCGT GTGGACCGTGCGGGTCATGCTTTTTGGCGTGGCCCTCATTATATTCCTCG AGACGGTCGAAAATCTGTGGGTGCATCGGGGGGCATCTTGGGGTGTCGGG AAGGATAGAAAAGGGAGGCGGAGCAAGGGGTGGTAG back to topprotein sequence of NO10G01420.1 >NO10G01420.1-protein ID=NO10G01420.1-protein|Name=NO10G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=682bp MAASETEVESCLISKEVAHVLAVLAMRNNPMKEDSLKQIGSIQASSSSSS FSSSQSYSSSPSLTIEIQRLEWLPQKRTLYLAAYPEVNLYASSSSSSFPL ELTRAQQLLLSPPVVLEIYFPNLSSEPPFCFSTSDAGALVAERVNSSGSL LPLDRSSLLHAVSKITAIIKQEVDSIWPPELSGEDEGGRVGRREGGVDYR RDFARAINEYLEKHLVAADLMVSLLSMSKMHHNPTIKAPVPRFFYQREGS FMINQSALSSAIAAIPPLEVLRESGTEEERGARGLPFGSCVLLHHLFFRE RVTVVDGREAGREGGLRTVGQSPASSLLQPEQSPPSPYSSPSLITTLFSK AGFNTASSTDLPCMVFPLHHAQDSRFTALSERHGTCYGFHGSPPINFFSI VSLGLRSLSGTKGMKNGAVFGDGVYVASKCEVARNFGGWGVPVWRHSRFG VVPGGKGGAPLFAYQIIALCEVINLPQYRCGLTGGGSSGTPAPSTSTFSS DFFSSSSSCPTTRQRRRGSNGTSSSSSSSSSSSSSSSSSSSSSSSKSSSS SEYWVVGDDTHLVVRALLLFKDPAVLRGPQPLPASSSSANTVMTPLQNNN INVLQQQQCPINPQHRPFHPLPRPPVAQRHIYLQFIVWTVRVMLFGVALI IFLETVENLWVHRGASWGVGKDRKGRRSKGW* back to topmRNA from alignment at chr10:417717..420070+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G01420.1 ID=NO10G01420.1|Name=NO10G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2354bp|location=Sequence derived from alignment at chr10:417717..420070+ (Nannochloropsis oceanica) ACTACAGTCACACACAGGAAGTAAGCTGCAACAAGCCTCAACTCTCGCTT
CTCCAACAATCACCGGCACAAGCAGCAGTTCTCATCCACCATGGCGGCGT
CAGAAACTGAGGTGGAGTCCTGCTTGATCAGCAAGGAGGTAGCGCACGTC
CTGGCGGTGCTGGCGATGCGCAATAACCCTATGAAGGAGGACTCACTGAA
GGTACGTGTTCGAAGAGATGAGTGCGGTGGGAAGGAATGGGGGAGGTAGT
ATGTGCGTGCGCCAGTTCGCTGACACTGGCTGCGAACACACGATAATAAG
TGGTAACGTTCGGCATTGAAAGCGGCATCTGTCTTGATTGAAGTGCAGGT
GCCCACAATCCTAGAAATCCTCCCCGTTTAACCCACTGGTGGCTCCCTCC
CGTCGAACCCACAAAACAGCAAATCGGATCCATCCAAGCCTCTTCCTCCT
CCAGCTCCTTCTCCTCCTCCCAATCATACTCCTCCTCTCCCTCCCTCACC
ATCGAAATTCAACGTCTAGAATGGCTCCCCCAGAAGCGGACACTTTATCT
AGCCGCCTACCCTGAGGTCAATCTCTACGCCTCTTCCTCCTCCTCCTCTT
TCCCTCTCGAGCTCACCCGAGCCCAACAGCTCCTCCTCTCTCCTCCGGTG
GTGCTCGAGATTTATTTTCCCAATTTATCTTCCGAGCCACCCTTCTGCTT
TTCCACTTCAGATGCTGGCGCGTTGGTCGCAGAGCGGGTGAACAGCAGCG
GTAGCCTCTTGCCTCTAGATCGATCGTCATTATTGCATGCCGTGTCCAAA
ATTACTGCGATTATCAAGCAGGAAGTGGATAGCATTTGGCCGCCGGAGTT
GAGTGGAGAAGACGAGGGTGGGAGGGTGGGAAGGAGGGAGGGTGGGGTGG
ATTACCGGAGGGACTTTGCTCGTGCGATTAATGAATATTTAGAGAAGCAC
TTGGTGGCGGCTGACTTGATGGTGTCATTGTTGAGTATGAGTAAGATGCA
CCATAACCCCACAATTAAAGCACCGGTGCCCAGATTCTTCTATCAGCGAG
AAGGGAGTTTTATGATCAATCAATCGGCGTTGTCTTCGGCAATAGCGGCG
ATTCCACCCTTGGAGGTATTGAGGGAGAGTGGGACGGAAGAGGAGCGAGG
GGCAAGGGGGTTGCCATTTGGGAGTTGTGTGTTGTTGCATCACTTGTTTT
TCCGGGAGCGGGTGACGGTGGTGGATGGGAGGGAGGCAGGGAGGGAGGGA
GGATTGCGGACCGTAGGACAGAGTCCTGCTTCGTCACTGTTGCAGCCAGA
ACAATCTCCCCCCTCCCCTTACTCCTCTCCCTCCTTAATCACCACCCTCT
TCTCTAAAGCCGGCTTTAACACCGCCTCCTCGACCGATCTCCCGTGCATG
GTATTTCCGCTGCATCATGCCCAAGACTCGCGCTTCACCGCCCTTTCTGA
GAGACACGGGACTTGCTACGGCTTCCACGGCTCCCCCCCCATCAACTTCT
TCTCAATCGTTTCCCTGGGCTTGAGATCGTTAAGTGGCACAAAAGGGATG
AAGAATGGGGCAGTTTTCGGCGATGGGGTGTATGTGGCCTCGAAATGCGA
GGTGGCGAGGAATTTTGGTGGGTGGGGAGTCCCGGTGTGGAGGCATAGCC
GCTTTGGGGTCGTCCCCGGGGGAAAGGGAGGTGCACCTTTGTTTGCGTAT
CAGATTATTGCCTTGTGTGAAGTTATTAACTTGCCGCAGTATCGGTGTGG
GTTGACGGGAGGGGGCAGCAGTGGCACACCAGCGCCTTCCACTTCTACCT
TTTCCTCCGACTTTTTTTCATCTTCTTCGAGCTGTCCCACTACGAGGCAG
CGCCGACGAGGGAGCAACGGCACGAGCAGCAGCAGCAGCAGTAGCAGCAG
CAGCAGCAGTAGCAGCAGTAGCAGCAGTAGCAGCAGTAGCAGCAAGAGCA
GCAGCAGCAGTGAGTACTGGGTTGTCGGTGACGACACCCACCTCGTTGTC
CGCGCTCTCCTTCTCTTCAAAGACCCCGCTGTTCTCCGTGGTCCCCAGCC
TCTTCCTGCATCCTCCTCTTCTGCCAATACCGTCATGACGCCGCTTCAAA
ACAATAATATCAATGTACTGCAACAACAGCAATGCCCGATCAACCCGCAA
CACCGTCCTTTTCACCCCTTACCTCGTCCTCCCGTTGCACAACGACACAT
TTACTTGCAATTTATCGTGTGGACCGTGCGGGTCATGCTTTTTGGCGTGG
CCCTCATTATATTCCTCGAGACGGTCGAAAATCTGTGGGTGCATCGGGGG
GCATCTTGGGGTGTCGGGAAGGATAGAAAAGGGAGGCGGAGCAAGGGGTG
GTAG back to topCoding sequence (CDS) from alignment at chr10:417717..420070+ >NO10G01420.1 ID=NO10G01420.1|Name=NO10G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=2046bp|location=Sequence derived from alignment at chr10:417717..420070+ (Nannochloropsis oceanica) ATGGCGGCGTCAGAAACTGAGGTGGAGTCCTGCTTGATCAGCAAGGAGGT AGCGCACGTCCTGGCGGTGCTGGCGATGCGCAATAACCCTATGAAGGAGG ACTCACTGAAGCAAATCGGATCCATCCAAGCCTCTTCCTCCTCCAGCTCC TTCTCCTCCTCCCAATCATACTCCTCCTCTCCCTCCCTCACCATCGAAAT TCAACGTCTAGAATGGCTCCCCCAGAAGCGGACACTTTATCTAGCCGCCT ACCCTGAGGTCAATCTCTACGCCTCTTCCTCCTCCTCCTCTTTCCCTCTC GAGCTCACCCGAGCCCAACAGCTCCTCCTCTCTCCTCCGGTGGTGCTCGA GATTTATTTTCCCAATTTATCTTCCGAGCCACCCTTCTGCTTTTCCACTT CAGATGCTGGCGCGTTGGTCGCAGAGCGGGTGAACAGCAGCGGTAGCCTC TTGCCTCTAGATCGATCGTCATTATTGCATGCCGTGTCCAAAATTACTGC GATTATCAAGCAGGAAGTGGATAGCATTTGGCCGCCGGAGTTGAGTGGAG AAGACGAGGGTGGGAGGGTGGGAAGGAGGGAGGGTGGGGTGGATTACCGG AGGGACTTTGCTCGTGCGATTAATGAATATTTAGAGAAGCACTTGGTGGC GGCTGACTTGATGGTGTCATTGTTGAGTATGAGTAAGATGCACCATAACC CCACAATTAAAGCACCGGTGCCCAGATTCTTCTATCAGCGAGAAGGGAGT TTTATGATCAATCAATCGGCGTTGTCTTCGGCAATAGCGGCGATTCCACC CTTGGAGGTATTGAGGGAGAGTGGGACGGAAGAGGAGCGAGGGGCAAGGG GGTTGCCATTTGGGAGTTGTGTGTTGTTGCATCACTTGTTTTTCCGGGAG CGGGTGACGGTGGTGGATGGGAGGGAGGCAGGGAGGGAGGGAGGATTGCG GACCGTAGGACAGAGTCCTGCTTCGTCACTGTTGCAGCCAGAACAATCTC CCCCCTCCCCTTACTCCTCTCCCTCCTTAATCACCACCCTCTTCTCTAAA GCCGGCTTTAACACCGCCTCCTCGACCGATCTCCCGTGCATGGTATTTCC GCTGCATCATGCCCAAGACTCGCGCTTCACCGCCCTTTCTGAGAGACACG GGACTTGCTACGGCTTCCACGGCTCCCCCCCCATCAACTTCTTCTCAATC GTTTCCCTGGGCTTGAGATCGTTAAGTGGCACAAAAGGGATGAAGAATGG GGCAGTTTTCGGCGATGGGGTGTATGTGGCCTCGAAATGCGAGGTGGCGA GGAATTTTGGTGGGTGGGGAGTCCCGGTGTGGAGGCATAGCCGCTTTGGG GTCGTCCCCGGGGGAAAGGGAGGTGCACCTTTGTTTGCGTATCAGATTAT TGCCTTGTGTGAAGTTATTAACTTGCCGCAGTATCGGTGTGGGTTGACGG GAGGGGGCAGCAGTGGCACACCAGCGCCTTCCACTTCTACCTTTTCCTCC GACTTTTTTTCATCTTCTTCGAGCTGTCCCACTACGAGGCAGCGCCGACG AGGGAGCAACGGCACGAGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCA GTAGCAGCAGTAGCAGCAGTAGCAGCAGTAGCAGCAAGAGCAGCAGCAGC AGTGAGTACTGGGTTGTCGGTGACGACACCCACCTCGTTGTCCGCGCTCT CCTTCTCTTCAAAGACCCCGCTGTTCTCCGTGGTCCCCAGCCTCTTCCTG CATCCTCCTCTTCTGCCAATACCGTCATGACGCCGCTTCAAAACAATAAT ATCAATGTACTGCAACAACAGCAATGCCCGATCAACCCGCAACACCGTCC TTTTCACCCCTTACCTCGTCCTCCCGTTGCACAACGACACATTTACTTGC AATTTATCGTGTGGACCGTGCGGGTCATGCTTTTTGGCGTGGCCCTCATT ATATTCCTCGAGACGGTCGAAAATCTGTGGGTGCATCGGGGGGCATCTTG GGGTGTCGGGAAGGATAGAAAAGGGAGGCGGAGCAAGGGGTGGTAG back to top
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