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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr10 | genome | chr10:294612..297123 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G00950.1 vs.
Match: CBN79407.1 (Kinesin-associated protein [Ectocarpus siliculosus]) HSP 1 Score: 218.0 bits (554), Expect = 1.100e-52 Identity = 200/660 (30.30%), Postives = 313/660 (47.42%), Query Frame = 0
Query: 6 TASARKIKPETVVLHPH--EPVLVITYAIV-----ALGAASATAEKQQKIVRLDPRR-LASYDDCVFMADQLVDQSKYLVKSQQSEVEQLL----HQL------------------YQRHHEAVAANDQNSTPNPHANMANLDAYLEMLYDDKNN------IEGTAKILELTRDVTNLEDLLLGDPTVPSALARILGDYDSRRHDVSLLYNILRIFLVASHFHEMQEAIVTEHRVGSLTMRALEGNLPGVGH------------------ACGGDGSNG-----EGHFAGKSRIAKTSKSRIVFVGLWLLLNLSTGNALLEEKMVKKQLIPRYLLPFLTDTESMAADTDLLILVLTFLKRLSVYKENVQQMAEGQLVPTLVKLIRVEVSVPKSSSTTGNGISGKRKSSQNDERVSGTALGILYNLAFDPSLRQVMVVHGLLPKLIGLLRCKQTWRAECLKLMYILSFDNETKLLLGGSDGNKSSNSNAGTMSSSSVMPLLKELIFHLPLPSLPGELAALTVNLTFESNNIEQLCAKAGLRRLMDRVIRYRDPLVLKIVRNISQWSLASQGALADPDNEYQLRNLWPSHIKPLLALLAGSSLSTSSLSSVKPGMPRLSSSLLQPPQALVLEALGTLANLTPLDLPVGMQWHDFVIPLSMHP 607
+A K+ P+ + + E V+TY + A G A +EK+++ R+ R+ L D +A ++ + KY+ S++ E+E+++ HQL ++ E + A M +L+ Y+E+LY+ K+ I+GTA IL+L V NLE L+ D T+ AL R+L + + V L YNILR FL S+F EM I++ +RVG++T++ +E + H A G D K ++ + +++FVGL +L+NL+ E KMV+K L+ LL L + A +LL L TFLK+LSV +EN + E + LV+ VP S + + L +LYNL+FDP +R MV GL+PKL+ LL+ + +RA L+L+Y +S D+ K + +D MP++ +L+ + P L ELAAL VNL+ N + + ++ GL L+DRV +DPL++K+VRNIS W+ SQ A+ P+ EY+ R LW ++PLL L+T + S L++E LGTL NLT LDLP G+ W D + ++ P
Sbjct: 11 SAVRHKVNPKDISIEADLDELSAVVTYVVETTYLDAFGVA-VDSEKKRERKRIKLRKNLKPSTDVSKLAGDVMKKCKYVHVSKRDELERVIQDLQHQLIRDDLRASTGGGGDGGDWWRGGEEGRGGKNGGEEEQEEAQMDSLEDYVELLYEGKDKDDMTKKIKGTALILDLCCHVGNLEHLIQ-DHTLMGALTRVLSE--EYKKSVELCYNILRAFLAFSNFMEM-HPILSTYRVGNITLKIVELEVQRAQHRQEEKRKRSAEVEKALREARGNDAQTATVRRRAEREEAKQKVQTKRQDKLLFVGLHILINLAE-EVSTERKMVRKGLVE--LLRSLLE----RASVNLLYLTATFLKKLSVLEENKDRAKECGVAGCLVRF------VPCSC-----------------DPLIVMTLRLLYNLSFDPDIRAQMVKAGLIPKLVELLK-RPPYRARGLRLLYHMSIDDRCKTMFAYTD----------------AMPIVMQLVLNFPQKMLAKELAALAVNLSLNPRNAQMMASQRGLPHLVDRVTETKDPLLMKVVRNISMWTFRSQEAMDSPEKEYRERTLWDPLVEPLL------DLATETES-----------------HELLVEVLGTLNNLTTLDLPRGIGWVDVLSNYALAP 595
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G00950.1 ID=NO10G00950.1|Name=NO10G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2512bp
AAATAAAAGATGACAACATACCCAACAGCATCTGCGCGAAAAATTAAGCC
GGAAACAGTGGTCTTGCATCCGCACGAGCCTGTCCTCGTTATCACCTACG
CTATCGTCGCCCTCGGCGCTGCTTCGGCAACCGCCGAGAAGCAGCAAAAA
ATTGTGCGCCTTGACCCCCGCAGGTTGGCCAGCTACGATGATTGTGTTTT
TATGGCAGATCAGCTTGTGGATCAATCGAAGTACTTGGTAAAATCGCAGC
AATCGGAGGTGGAGCAACTCTTACATCAGCTCTACCAGCGGCACCACGAG
GCCGTCGCCGCCAACGACCAGAACAGCACCCCCAATCCGCATGCCAACAT
GGCCAACCTTGATGCTTATTTGGAAATGCTTTACGACGACAAAAACAACA
TTGAGGGGACAGCCAAAATTCTGGAGCTGACCCGGGACGTGACAAATCTT
GAGGACCTGCTCCTGGGCGACCCCACGGTACCAAGTGCCTTAGCCCGCAT
CCTGGGTGATTACGACTCGCGGCGTCACGACGTATCGCTGCTTTATAATA
TTTTGCGCATCTTTTTGGTGGCTTCTCATTTTCATGAGATGCAGGAAGCC
ATTGTGACGGAGCACCGCGTGGGGTCTTTGACTATGCGGGCGTTGGAAGG
CAACCTGCCTGGTGTAGGACATGCTTGTGGCGGTGACGGTAGTAATGGAG
AAGGGCATTTCGCAGGAAAAAGCAGGATCGCCAAGACGTCCAAGTCTCGT
ATTGTTTTTGTAGGTCTTTGGTTGTTGCTCAATTTGAGCACGGGCAATGC
CTTGTTGGAGGAGAAAATGGTCAAGAAGCAACTCATTCCCCGCTATCTCC
TACCGTTTCTCACCGACACTGAAAGTATGGCTGCTGACACCGATTTACTC
ATCCTCGTCCTTACCTTCCTTAAGCGCCTGAGTGTATACAAGGAAAATGT
GCAGCAGATGGCCGAGGGTCAGCTGGTCCCCACGCTTGTAAAGCTCATCC
GTGTCGAGGTCAGCGTGCCGAAGAGCAGCAGCACCACAGGCAATGGCATC
AGTGGCAAAAGAAAAAGTAGCCAAAACGATGAGCGAGTGAGTGGAACAGC
GTTAGGGATTCTCTATAATCTGGCTTTCGACCCCTCGCTGCGTCAGGTCA
TGGTGGTGCACGGCCTTCTGCCCAAACTCATCGGCCTTTTGAGGTGCAAG
CAGACCTGGCGGGCCGAATGTCTCAAGCTTATGTACATCCTTTCCTTTGA
CAACGAGACCAAGCTCCTTCTAGGCGGCAGTGACGGCAACAAGAGTAGCA
ATAGCAATGCAGGAACAATGTCATCCTCTTCCGTCATGCCATTGCTGAAG
GAGCTAATTTTCCACCTTCCCCTCCCGTCCTTACCCGGCGAGCTAGCGGC
ATTGACAGTCAACCTCACTTTTGAATCCAATAACATCGAACAGCTTTGCG
CCAAGGCTGGTCTGCGTCGGCTGATGGATCGTGTGATCAGATATCGAGAC
CCGCTGGTCTTGAAGATTGTTCGCAATATTAGCCAGTGGTCTCTGGCCTC
ACAAGGAGCGCTCGCAGACCCTGATAATGAGTACCAGCTCCGAAACCTGT
GGCCATCGCATATCAAGCCCTTGCTGGCACTTTTGGCGGGTTCCTCGTTA
TCTACTTCTTCTTTGTCATCGGTCAAGCCGGGCATGCCGAGGCTCTCGTC
TTCGCTGTTGCAACCACCACAGGCCTTGGTATTGGAGGCTTTGGGTACGC
TTGCCAATCTGACGCCGCTTGATCTTCCTGTCGGCATGCAGTGGCATGAC
TTTGTGATACCTCTTTCGATGCATCCTGCTCAGGCTCAGCCAGCAGAGCA
GCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGC
AGCCACCGCAGACGGTGTGGCTGTATTGCAGGGAACAGTTTCTCGCTTTG
GTACCATGCTTTCGTGTCGGAATAAGGGAAAAGGAGGTGGTCGACATGCT
TCTGCAAATTCTTTTGCTTCTGCAGACCCTAGCCCTAGACCCCGTGCACC
TCAATGACATGACCAGCGACGAAACATTTCTAGAGGCCCTTCACTCTGTA
TGGCGCATCCACGCGCAAGACGAGCCCGAATTGGCATTGCAAGTCTTTGT
ACTGGTACACCGCCTCCTGCTCTTGTCTTTACCATCGCCCATCTCATGGT
ACCAGCCATATTATCGTCAGGACATCGTGAGAGCACTGTGGCATGCCAAT
GCGGAGGTTCGGAGGGTGGCGAATCAGTGCGTGGAATGTTTTGTAGAGGA
TGGGCGGCGAGCAGACGAAGGAGAGAGTAAAACAATGGGAGAGTCACTGC
TGCAGCAGGCGCGTTTTGAGGCACACAACGCGGAGTGGTGTGCTCGTATG
AAAGAAAGGGAAAGAGTACAAAGGAGAAGTAGGGGTGCAAGTGGATAAGA
GAAAAATACGTTATCAATTCTATTAGCTATCATCAAAATCCAAGAGCACT
GCGCGGTAAAAA back to topprotein sequence of NO10G00950.1 >NO10G00950.1-protein ID=NO10G00950.1-protein|Name=NO10G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=813bp
MTTYPTASARKIKPETVVLHPHEPVLVITYAIVALGAASATAEKQQKIVR
LDPRRLASYDDCVFMADQLVDQSKYLVKSQQSEVEQLLHQLYQRHHEAVA
ANDQNSTPNPHANMANLDAYLEMLYDDKNNIEGTAKILELTRDVTNLEDL
LLGDPTVPSALARILGDYDSRRHDVSLLYNILRIFLVASHFHEMQEAIVT
EHRVGSLTMRALEGNLPGVGHACGGDGSNGEGHFAGKSRIAKTSKSRIVF
VGLWLLLNLSTGNALLEEKMVKKQLIPRYLLPFLTDTESMAADTDLLILV
LTFLKRLSVYKENVQQMAEGQLVPTLVKLIRVEVSVPKSSSTTGNGISGK
RKSSQNDERVSGTALGILYNLAFDPSLRQVMVVHGLLPKLIGLLRCKQTW
RAECLKLMYILSFDNETKLLLGGSDGNKSSNSNAGTMSSSSVMPLLKELI
FHLPLPSLPGELAALTVNLTFESNNIEQLCAKAGLRRLMDRVIRYRDPLV
LKIVRNISQWSLASQGALADPDNEYQLRNLWPSHIKPLLALLAGSSLSTS
SLSSVKPGMPRLSSSLLQPPQALVLEALGTLANLTPLDLPVGMQWHDFVI
PLSMHPAQAQPAEQRQQQQQQQQQQQQQQQQPPQTVWLYCREQFLALVPC
FRVGIREKEVVDMLLQILLLLQTLALDPVHLNDMTSDETFLEALHSVWRI
HAQDEPELALQVFVLVHRLLLLSLPSPISWYQPYYRQDIVRALWHANAEV
RRVANQCVECFVEDGRRADEGESKTMGESLLQQARFEAHNAEWCARMKER
ERVQRRSRGASG* back to topmRNA from alignment at chr10:294612..297123- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G00950.1 ID=NO10G00950.1|Name=NO10G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2512bp|location=Sequence derived from alignment at chr10:294612..297123- (Nannochloropsis oceanica)
AAATAAAAGATGACAACATACCCAACAGCATCTGCGCGAAAAATTAAGCC
GGAAACAGTGGTCTTGCATCCGCACGAGCCTGTCCTCGTTATCACCTACG
CTATCGTCGCCCTCGGCGCTGCTTCGGCAACCGCCGAGAAGCAGCAAAAA
ATTGTGCGCCTTGACCCCCGCAGGTTGGCCAGCTACGATGATTGTGTTTT
TATGGCAGATCAGCTTGTGGATCAATCGAAGTACTTGGTAAAATCGCAGC
AATCGGAGGTGGAGCAACTCTTACATCAGCTCTACCAGCGGCACCACGAG
GCCGTCGCCGCCAACGACCAGAACAGCACCCCCAATCCGCATGCCAACAT
GGCCAACCTTGATGCTTATTTGGAAATGCTTTACGACGACAAAAACAACA
TTGAGGGGACAGCCAAAATTCTGGAGCTGACCCGGGACGTGACAAATCTT
GAGGACCTGCTCCTGGGCGACCCCACGGTACCAAGTGCCTTAGCCCGCAT
CCTGGGTGATTACGACTCGCGGCGTCACGACGTATCGCTGCTTTATAATA
TTTTGCGCATCTTTTTGGTGGCTTCTCATTTTCATGAGATGCAGGAAGCC
ATTGTGACGGAGCACCGCGTGGGGTCTTTGACTATGCGGGCGTTGGAAGG
CAACCTGCCTGGTGTAGGACATGCTTGTGGCGGTGACGGTAGTAATGGAG
AAGGGCATTTCGCAGGAAAAAGCAGGATCGCCAAGACGTCCAAGTCTCGT
ATTGTTTTTGTAGGTCTTTGGTTGTTGCTCAATTTGAGCACGGGCAATGC
CTTGTTGGAGGAGAAAATGGTCAAGAAGCAACTCATTCCCCGCTATCTCC
TACCGTTTCTCACCGACACTGAAAGTATGGCTGCTGACACCGATTTACTC
ATCCTCGTCCTTACCTTCCTTAAGCGCCTGAGTGTATACAAGGAAAATGT
GCAGCAGATGGCCGAGGGTCAGCTGGTCCCCACGCTTGTAAAGCTCATCC
GTGTCGAGGTCAGCGTGCCGAAGAGCAGCAGCACCACAGGCAATGGCATC
AGTGGCAAAAGAAAAAGTAGCCAAAACGATGAGCGAGTGAGTGGAACAGC
GTTAGGGATTCTCTATAATCTGGCTTTCGACCCCTCGCTGCGTCAGGTCA
TGGTGGTGCACGGCCTTCTGCCCAAACTCATCGGCCTTTTGAGGTGCAAG
CAGACCTGGCGGGCCGAATGTCTCAAGCTTATGTACATCCTTTCCTTTGA
CAACGAGACCAAGCTCCTTCTAGGCGGCAGTGACGGCAACAAGAGTAGCA
ATAGCAATGCAGGAACAATGTCATCCTCTTCCGTCATGCCATTGCTGAAG
GAGCTAATTTTCCACCTTCCCCTCCCGTCCTTACCCGGCGAGCTAGCGGC
ATTGACAGTCAACCTCACTTTTGAATCCAATAACATCGAACAGCTTTGCG
CCAAGGCTGGTCTGCGTCGGCTGATGGATCGTGTGATCAGATATCGAGAC
CCGCTGGTCTTGAAGATTGTTCGCAATATTAGCCAGTGGTCTCTGGCCTC
ACAAGGAGCGCTCGCAGACCCTGATAATGAGTACCAGCTCCGAAACCTGT
GGCCATCGCATATCAAGCCCTTGCTGGCACTTTTGGCGGGTTCCTCGTTA
TCTACTTCTTCTTTGTCATCGGTCAAGCCGGGCATGCCGAGGCTCTCGTC
TTCGCTGTTGCAACCACCACAGGCCTTGGTATTGGAGGCTTTGGGTACGC
TTGCCAATCTGACGCCGCTTGATCTTCCTGTCGGCATGCAGTGGCATGAC
TTTGTGATACCTCTTTCGATGCATCCTGCTCAGGCTCAGCCAGCAGAGCA
GCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGC
AGCCACCGCAGACGGTGTGGCTGTATTGCAGGGAACAGTTTCTCGCTTTG
GTACCATGCTTTCGTGTCGGAATAAGGGAAAAGGAGGTGGTCGACATGCT
TCTGCAAATTCTTTTGCTTCTGCAGACCCTAGCCCTAGACCCCGTGCACC
TCAATGACATGACCAGCGACGAAACATTTCTAGAGGCCCTTCACTCTGTA
TGGCGCATCCACGCGCAAGACGAGCCCGAATTGGCATTGCAAGTCTTTGT
ACTGGTACACCGCCTCCTGCTCTTGTCTTTACCATCGCCCATCTCATGGT
ACCAGCCATATTATCGTCAGGACATCGTGAGAGCACTGTGGCATGCCAAT
GCGGAGGTTCGGAGGGTGGCGAATCAGTGCGTGGAATGTTTTGTAGAGGA
TGGGCGGCGAGCAGACGAAGGAGAGAGTAAAACAATGGGAGAGTCACTGC
TGCAGCAGGCGCGTTTTGAGGCACACAACGCGGAGTGGTGTGCTCGTATG
AAAGAAAGGGAAAGAGTACAAAGGAGAAGTAGGGGTGCAAGTGGATAAGA
GAAAAATACGTTATCAATTCTATTAGCTATCATCAAAATCCAAGAGCACT
GCGCGGTAAAAA back to topCoding sequence (CDS) from alignment at chr10:294612..297123- >NO10G00950.1 ID=NO10G00950.1|Name=NO10G00950.1|organism=Nannochloropsis oceanica|type=CDS|length=2439bp|location=Sequence derived from alignment at chr10:294612..297123- (Nannochloropsis oceanica)
ATGACAACATACCCAACAGCATCTGCGCGAAAAATTAAGCCGGAAACAGT
GGTCTTGCATCCGCACGAGCCTGTCCTCGTTATCACCTACGCTATCGTCG
CCCTCGGCGCTGCTTCGGCAACCGCCGAGAAGCAGCAAAAAATTGTGCGC
CTTGACCCCCGCAGGTTGGCCAGCTACGATGATTGTGTTTTTATGGCAGA
TCAGCTTGTGGATCAATCGAAGTACTTGGTAAAATCGCAGCAATCGGAGG
TGGAGCAACTCTTACATCAGCTCTACCAGCGGCACCACGAGGCCGTCGCC
GCCAACGACCAGAACAGCACCCCCAATCCGCATGCCAACATGGCCAACCT
TGATGCTTATTTGGAAATGCTTTACGACGACAAAAACAACATTGAGGGGA
CAGCCAAAATTCTGGAGCTGACCCGGGACGTGACAAATCTTGAGGACCTG
CTCCTGGGCGACCCCACGGTACCAAGTGCCTTAGCCCGCATCCTGGGTGA
TTACGACTCGCGGCGTCACGACGTATCGCTGCTTTATAATATTTTGCGCA
TCTTTTTGGTGGCTTCTCATTTTCATGAGATGCAGGAAGCCATTGTGACG
GAGCACCGCGTGGGGTCTTTGACTATGCGGGCGTTGGAAGGCAACCTGCC
TGGTGTAGGACATGCTTGTGGCGGTGACGGTAGTAATGGAGAAGGGCATT
TCGCAGGAAAAAGCAGGATCGCCAAGACGTCCAAGTCTCGTATTGTTTTT
GTAGGTCTTTGGTTGTTGCTCAATTTGAGCACGGGCAATGCCTTGTTGGA
GGAGAAAATGGTCAAGAAGCAACTCATTCCCCGCTATCTCCTACCGTTTC
TCACCGACACTGAAAGTATGGCTGCTGACACCGATTTACTCATCCTCGTC
CTTACCTTCCTTAAGCGCCTGAGTGTATACAAGGAAAATGTGCAGCAGAT
GGCCGAGGGTCAGCTGGTCCCCACGCTTGTAAAGCTCATCCGTGTCGAGG
TCAGCGTGCCGAAGAGCAGCAGCACCACAGGCAATGGCATCAGTGGCAAA
AGAAAAAGTAGCCAAAACGATGAGCGAGTGAGTGGAACAGCGTTAGGGAT
TCTCTATAATCTGGCTTTCGACCCCTCGCTGCGTCAGGTCATGGTGGTGC
ACGGCCTTCTGCCCAAACTCATCGGCCTTTTGAGGTGCAAGCAGACCTGG
CGGGCCGAATGTCTCAAGCTTATGTACATCCTTTCCTTTGACAACGAGAC
CAAGCTCCTTCTAGGCGGCAGTGACGGCAACAAGAGTAGCAATAGCAATG
CAGGAACAATGTCATCCTCTTCCGTCATGCCATTGCTGAAGGAGCTAATT
TTCCACCTTCCCCTCCCGTCCTTACCCGGCGAGCTAGCGGCATTGACAGT
CAACCTCACTTTTGAATCCAATAACATCGAACAGCTTTGCGCCAAGGCTG
GTCTGCGTCGGCTGATGGATCGTGTGATCAGATATCGAGACCCGCTGGTC
TTGAAGATTGTTCGCAATATTAGCCAGTGGTCTCTGGCCTCACAAGGAGC
GCTCGCAGACCCTGATAATGAGTACCAGCTCCGAAACCTGTGGCCATCGC
ATATCAAGCCCTTGCTGGCACTTTTGGCGGGTTCCTCGTTATCTACTTCT
TCTTTGTCATCGGTCAAGCCGGGCATGCCGAGGCTCTCGTCTTCGCTGTT
GCAACCACCACAGGCCTTGGTATTGGAGGCTTTGGGTACGCTTGCCAATC
TGACGCCGCTTGATCTTCCTGTCGGCATGCAGTGGCATGACTTTGTGATA
CCTCTTTCGATGCATCCTGCTCAGGCTCAGCCAGCAGAGCAGCGGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCCACCGC
AGACGGTGTGGCTGTATTGCAGGGAACAGTTTCTCGCTTTGGTACCATGC
TTTCGTGTCGGAATAAGGGAAAAGGAGGTGGTCGACATGCTTCTGCAAAT
TCTTTTGCTTCTGCAGACCCTAGCCCTAGACCCCGTGCACCTCAATGACA
TGACCAGCGACGAAACATTTCTAGAGGCCCTTCACTCTGTATGGCGCATC
CACGCGCAAGACGAGCCCGAATTGGCATTGCAAGTCTTTGTACTGGTACA
CCGCCTCCTGCTCTTGTCTTTACCATCGCCCATCTCATGGTACCAGCCAT
ATTATCGTCAGGACATCGTGAGAGCACTGTGGCATGCCAATGCGGAGGTT
CGGAGGGTGGCGAATCAGTGCGTGGAATGTTTTGTAGAGGATGGGCGGCG
AGCAGACGAAGGAGAGAGTAAAACAATGGGAGAGTCACTGCTGCAGCAGG
CGCGTTTTGAGGCACACAACGCGGAGTGGTGTGCTCGTATGAAAGAAAGG
GAAAGAGTACAAAGGAGAAGTAGGGGTGCAAGTGGATAA back to top
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