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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:272980..276414 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G00840.1 vs.
Match: EWM25307.1 (uncharacterized protein Naga_100135g15 [Nannochloropsis gaditana]) HSP 1 Score: 468.8 bits (1205), Expect = 1.400e-128 Identity = 236/314 (75.16%), Postives = 275/314 (87.58%), Query Frame = 0
Query: 1 MKGAFAVTALVLATA---SFQGADAFVGSSFKARRHALPRLHARKPDQVFNTKESFAPIIPGLSVSPDLLDVKEMAKATAFMAPLVLGASDAMAKGGEYGVLEGRTFAFVHPTVMGILFLTTAYTGYLGWQWRSIRTLAGDINALKEALPKLSDGSKVTMPVAKQIASVEGVLKSMGEGDEEAAQLKADLSVLRSATVKEIDAQVAELSERRKALLSGDFRDRHYNTASTLLGLGVFTSILGGFNTFFRAGKLFPGPHLYAGAGITALWAAAAALVPAMQKGNDTARSLHIGLNALNMALFAWQVGTGLEIAIK 312
M+G +A+ A+ + T S Q DAF+G+ KAR +L R+HA+KP VF+TKESFAP IPGL VSP+ LD+K +A+ F+APLVLGASDAMAKGGEYG+LEGR+FAFVHP VMG LFLTTAYTGYLGWQ+R+IRTLAG+++ALK++LPKLSDGSKVT+PV+KQIASVE LK+MGEGDEEA QLKADL++LRS V +D Q+A LSE+RK LL+GDFRDRHYNTASTLLGLGVFTSILGGFNTFFR+GKLFPGPHLYAGAGIT LWA AA++VPAMQKGN+TARSLHIGLNALN+ALFAWQVGTGLEIAIK
Sbjct: 1 MRGTYAMAAVTVVTTACFSLQRVDAFIGAGVKARLPSLSRVHAQKPYHVFDTKESFAPTIPGLPVSPEALDLKTIAQGVTFVAPLVLGASDAMAKGGEYGILEGRSFAFVHPIVMGALFLTTAYTGYLGWQFRTIRTLAGEMSALKDSLPKLSDGSKVTLPVSKQIASVESALKNMGEGDEEAKQLKADLNLLRSPGVAVLDTQMAALSEKRKTLLAGDFRDRHYNTASTLLGLGVFTSILGGFNTFFRSGKLFPGPHLYAGAGITVLWAVAASMVPAMQKGNETARSLHIGLNALNLALFAWQVGTGLEIAIK 314
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G00840.1 ID=NO10G00840.1|Name=NO10G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=3188bp CTCCTCCTCCTCCTCCTCCTCCTTTTCCTTCTCCTCGTCTGACCAAGACA ACCGTACCCGCTTCTTCTTCTCCTTCTCCTCTTTCATCTTCCTCTCCCTC CCCCTCCCCCCTCTCCTCCCTCCGGCCACGTTCCTCATCACCGCCTTGCC AGCCCTCGAAAACGGCAACAGTAACTTCCCGTCCTCATCGGAATTCCGAA CCCTCGCAAATACCCTCCTCCTCATCTCCTCCTCCTCATCCTCCCCCCCC TCTCCTTCTTCTCCTCCTCCTCTCCCTCCATCTCCCTCGCTTGCAACGTC AGGGCGAGCTGTGCATCTGCTTGGAGACGCAGTGCCCGCAGGCCTTCTTC ATTCTCCAGCGTCAACTCGCCCTGGAACTCATCAATGTGGTCCCTGACAA AATGCATGGTCTAGTATGTCAACGCGTGTGTATTCGCATGAGTCAATTAC CAACATAGCACTCTTCAGCGTTTCGTTCTCCGTCCCTCCGTCCCTCCGTC CCTCCGCCCCTCCGTCTCTCCCCCTCCTTTACACTCACCATGATCCGTCT AGTACTATGCATTTTCCCGCAACATAAACACGTTAGCCTAGGATTACCAC CTTTGACATCACCACTTGCGCTACTGTTGCTACTGCTACTGCTGGTAAGT CCTGCGCCCCATACTTCATCGGAAGTGACGAACTCATTGAAAAGGGACAA GGCGAACGCCTCCCGAGCCCGTAAATGGTTGTCGTCCTCGTTGTCGTCGT CGTCTTCCTCCTTCCTCCATGCTGCTGCTTCCCGCATTATTTTGCTGGTG CTGATGCGGAGGGGTTGTGACGTAGTCGAGACTGAGAAGGAGGGGGAGGA GGAGGTGGAGATGGGGGGAGAAGGAGGAGAAGGAGGGGCGGGGGCCGGCA TCTTTCGGTCTTCGTACACCAAGTCAGTGAGGTCACTGTTGCCCTTCTCC TCGTTCTCCATATCCTGTGCATATCTCCACCTCTTGGATTTCTCATCGTC CTTGTCTTTGCCCCTTTTGTGGTCCTTATTCTTCTTCCACCTCCTTTTCT TCTCCCCGCAGGCTTTGCACCGCTTCTCCGCAGCGGGATTCAGTAGCGTG CAGGTACTACAGCCCCAAGGGGTAGCAGAACGAGGTGTCTCGCACATATC ACAACACGCCGAAACACTGTCGTCCGCTTGCACATTGACAAACGTACACA CCGGGCACGCCCACCTTTTCGTGGCTCGAGCTGCGGCGTGTGCCGGTGCT CCCCCCCCTCTTCCGCCCCCTCTATCTTCCATGGCCATCAGATGAACCTG CCTCCTTTCCTCGCCGACCTCGTTTGTTTCTAGACAGCCTCCGACATGGA GCTAGCTCAAGAACAGTCTGTCTGCGTCAAACTCTTCCTGAATGGCGCAA GTGGATGGGGTGGTATTGGTATGAGGTAGGCTCAAAACTGGGTCGAACCC AAGCCTGAGGGGCCTCCACAGGCTGACAAAGCCTAGGACATTCAAAGATT CGTTGTTCGTGCTTTATCTCTGGTTTTCTTTCAATTTTGGGCCCGCGCAA GGGAGTTTACCGACGATAGAGCGAGGCGGCGAGGTGCTGGCAAGCAAGGT GTGAATCATCACACGGACGTATTTCTCAACAACCCTTTGTTAAAGCCCCG TCCGTCTTAAGACGGCTCTTAAAGACTCTCACACTTACACAGAATACACT GTCTTGCCTGTGCAAGACCCATTGCCAGTGCTTGCAGTATAACCTGCAAG TCATAGCCTCGTCTTATAATGTTGCTTTTTCTTCTTATCCTCTCTTGCTC TTACACACGCACCACAGAAGCAACTAACAAGCGAGGACGCGTCTAGAATG AAGGGAGCATTTGCTGTTACCGCCTTGGTCTTAGCCACGGCGTCCTTCCA GGGTGCCGATGCCTTTGTGGGCTCCAGTTTTAAAGCCCGCAGACATGCTC TGCCAAGGCTGCACGCCCGAAAGCCCGACCAGGTTTTCAACACCAAGGAG TCTTTCGCCCCCATCATACCTGGCTTATCCGTTTCCCCCGACCTGCTAGA CGTGAAGGAAATGGCCAAAGCCACTGCTTTCATGGCTCCGTTGGTATTGG GGGCGTCGGATGCCATGGCCAAGGGGGGGGAGTACGGCGTGTTGGAGGGA CGAACGTTCGCCTTCGTCCACCCGACGGTGATGGGCATTTTGTTTTTGAC GACTGCGTACACGGGGTATTTGGGGTGGCAGTGGCGCTCGATTCGTACTC TTGCGGGGGATATCAACGCCTTGAAGGAGGCCCTGCCGAAGCTCTCGGAT GGCAGTAAAGTGACCATGCCGGTCGCCAAGCAGATTGCTTCGGTGGAAGG GGTATTGAAGAGCATGGGTGAGGGAGACGAAGAAGCAGCGCAGCTTAAGG CTGATTTGAGTGTGTTGCGCTCGGCGACTGTCAAGGAGATCGATGCTCAA GTGGCGGAGTTGAGCGAGAGACGCAAGGCCCTTTTGTCCGGTGACTTCCG GGACCGACATTATAACACCGCATCGACGCTACTGGGTCTTGGTGTCTTCA CTTCCATCCTGGGTGGGTTCAACACGTTTTTCCGTGCTGGGAAGTTGTTC CCCGGGCCCCACCTGTACGCTGGTGCGGGGATCACGGCTCTGTGGGCGGC GGCTGCTGCGCTGGTACCGGCGATGCAGAAGGGGAATGACACGGCGAGAT CTTTGCACATCGGTCTCAACGCCCTGAACATGGCGTTGTTTGCATGGCAG GTGGGTACGGGGTTGGAGATTGCGATTAAAGTTTGGGGGTTCACGAAGTG GCCGTAGAGAGGAGTGGAGGAAGGGACGGTACAGATGGCGGGGGCTGACG GGGTAGGTGGGATACAAGAATGAACGGACACACGGCACACTACCTTTTCT TGAGGGTTGGCTATTGTGTGGTAGCGAGTGATTGATTGAGTGAAGGAAGG AAGGAGCGCAGATGTAGTTGAGATGTGATTGGGGGATGAGTATCGCTCCA TACACGATTGAAGGCACAGCGACAACCATGACAATGACCTTTAGAGATAA GCAATCCGTGACTGCTTAAGACGTGGAAAGAGGATTCATAGAGATGATGG GGAGCTGAACACAAAAAGAAAACAGTTGTTCACAACAACAATTATAAAAA TCCAATGGAAAAACGACACACTCCGTCAGAGCATCATC back to topprotein sequence of NO10G00840.1 >NO10G00840.1-protein ID=NO10G00840.1-protein|Name=NO10G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp MKGAFAVTALVLATASFQGADAFVGSSFKARRHALPRLHARKPDQVFNTK ESFAPIIPGLSVSPDLLDVKEMAKATAFMAPLVLGASDAMAKGGEYGVLE GRTFAFVHPTVMGILFLTTAYTGYLGWQWRSIRTLAGDINALKEALPKLS DGSKVTMPVAKQIASVEGVLKSMGEGDEEAAQLKADLSVLRSATVKEIDA QVAELSERRKALLSGDFRDRHYNTASTLLGLGVFTSILGGFNTFFRAGKL FPGPHLYAGAGITALWAAAAALVPAMQKGNDTARSLHIGLNALNMALFAW QVGTGLEIAIKVWGFTKWP* back to topmRNA from alignment at chr10:272980..276414+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G00840.1 ID=NO10G00840.1|Name=NO10G00840.1|organism=Nannochloropsis oceanica|type=mRNA|length=3435bp|location=Sequence derived from alignment at chr10:272980..276414+ (Nannochloropsis oceanica) CTCCTCCTCCTCCTCCTCCTCCTTTTCCTTCTCCTCGTCTGACCAAGACA
ACCGTACCCGCTTCTTCTTCTCCTTCTCCTCTTTCATCTTCCTCTCCCTC
CCCCTCCCCCCTCTCCTCCCTCCGGCCACGTTCCTCATCACCGCCTTGCC
AGCCCTCGAAAACGGCAACAGTAACTTCCCGTCCTCATCGGAATTCCGAA
CCCTCGCAAATACCCTCCTCCTCATCTCCTCCTCCTCATCCTCCCCCCCC
TCTCCTTCTTCTCCTCCTCCTCTCCCTCCATCTCCCTCGCTTGCAACGTC
AGGGCGAGCTGTGCATCTGCTTGGAGACGCAGTGCCCGCAGGCCTTCTTC
ATTCTCCAGCGTCAACTCGCCCTGGAACTCATCAATGTGGTCCCTGACAA
AATGCATGGTCTAGTATGTCAACGCGTGTGTATTCGCATGAGTCAATTAC
CAACATAGCACTCTTCAGCGTTTCGTTCTCCGTCCCTCCGTCCCTCCGTC
CCTCCGCCCCTCCGTCTCTCCCCCTCCTTTACACTCACCATGATCCGTCT
AGTACTATGCATTTTCCCGCAACATAAACACGTTAGCCTAGGATTACCAC
CTTTGACATCACCACTTGCGCTACTGTTGCTACTGCTACTGCTGGTAAGT
CCTGCGCCCCATACTTCATCGGAAGTGACGAACTCATTGAAAAGGGACAA
GGCGAACGCCTCCCGAGCCCGTAAATGGTTGTCGTCCTCGTTGTCGTCGT
CGTCTTCCTCCTTCCTCCATGCTGCTGCTTCCCGCATTATTTTGCTGGTG
CTGATGCGGAGGGGTTGTGACGTAGTCGAGACTGAGAAGGAGGGGGAGGA
GGAGGTGGAGATGGGGGGAGAAGGAGGAGAAGGAGGGGCGGGGGCCGGCA
TCTTTCGGTCTTCGTACACCAAGTCAGTGAGGTCACTGTTGCCCTTCTCC
TCGTTCTCCATATCCTGTGCATATCTCCACCTCTTGGATTTCTCATCGTC
CTTGTCTTTGCCCCTTTTGTGGTCCTTATTCTTCTTCCACCTCCTTTTCT
TCTCCCCGCAGGCTTTGCACCGCTTCTCCGCAGCGGGATTCAGTAGCGTG
CAGGTACTACAGCCCCAAGGGGTAGCAGAACGAGGTGTCTCGCACATATC
ACAACACGCCGAAACACTGTCGTCCGCTTGCACATTGACAAACGTACACA
CCGGGCACGCCCACCTTTTCGTGGCTCGAGCTGCGGCGTGTGCCGGTGCT
CCCCCCCCTCTTCCGCCCCCTCTATCTTCCATGGCCATCAGATGAACCTG
CCTCCTTTCCTCGCCGACCTCGTTTGTTTCTAGACAGCCTCCGACATGGA
GCTAGCTCAAGAACAGTCTGTCTGCGTCAAACTCTTCCTGAATGGCGCAA
GTGGATGGGGTGGTATTGGTATGAGGTAGGCTCAAAACTGGGTCGAACCC
AAGCCTGAGGGGCCTCCACAGGCTGACAAAGCCTAGGACATTCAAAGATT
CGTTGTTCGTGCTTTATCTCTGGTTTTCTTTCAATTTTGGGCCCGCGCAA
GGGAGTTTACCGACGATAGAGCGAGGCGGCGAGGTGCTGGCAAGCAAGGT
GTGAATCATCACACGGACGTATTTCTCAACAACCCTTTGTTAAAGCCCCG
TCCGTCTTAAGACGGCTCTTAAAGACTCTCACACTTACACAGAATACACT
GTCTTGCCTGTGCAAGACCCATTGCCAGTGCTTGCAGTATAACCTGCAAG
TCATAGCCTCGTCTTATAATGTTGCTTTTTCTTCTTATCCTCTCTTGCTC
TTACACACGCACCACAGAAGCAACTAACAAGCGAGGACGCGTCTAGAATG
AAGGGAGCATTTGCTGTTACCGCCTTGGTCTTAGCCACGGCGTCCTTCCA
GGGTGCCGATGCCTTTGTGGGCTCCAGTTTTAAAGGTGCGTTTGGCTGCG
GGTGGATTGGGGTTGGGTTTTGGTCGTGCGTGTGTGATTAGAGCCCCTTC
GTGTAGTCCTATCCGCGAGGTATGTCCCAGAGACCCTTCCCCCATCCGCC
CACACATTCACGTCTTCGTCTTTTAATGAAGGACCCTGTCAAAGCATGTA
CATCGCCAGCCAGCGTATGGCCTTGTCAACCTGACCACCGCCTCTCACCT
GCATCTACTCTTTTTCTCCCCACCACCCACAGCCCGCAGACATGCTCTGC
CAAGGCTGCACGCCCGAAAGCCCGACCAGGTTTTCAACACCAAGGAGTCT
TTCGCCCCCATCATACCTGGCTTATCCGTTTCCCCCGACCTGCTAGACGT
GAAGGAAATGGCCAAAGCCACTGCTTTCATGGCTCCGTTGGTATTGGGGG
CGTCGGATGCCATGGCCAAGGGGGGGGAGTACGGCGTGTTGGAGGGACGA
ACGTTCGCCTTCGTCCACCCGACGGTGATGGGCATTTTGTTTTTGACGAC
TGCGTACACGGGGTATTTGGGGTGGCAGTGGCGCTCGATTCGTACTCTTG
CGGGGGATATCAACGCCTTGAAGGAGGCCCTGCCGAAGCTCTCGGATGGC
AGTAAAGTGACCATGCCGGTCGCCAAGCAGATTGCTTCGGTGGAAGGGGT
ATTGAAGAGCATGGGTGAGGGAGACGAAGAAGCAGCGCAGCTTAAGGCTG
ATTTGAGTGTGTTGCGCTCGGCGACTGTCAAGGAGATCGATGCTCAAGTG
GCGGAGTTGAGCGAGAGACGCAAGGCCCTTTTGTCCGGTGACTTCCGGGA
CCGACATTATAACACCGCATCGACGCTACTGGGTCTTGGTGTCTTCACTT
CCATCCTGGGTGGGTTCAACACGTTTTTCCGTGCTGGGAAGTTGTTCCCC
GGGCCCCACCTGTACGCTGGTGCGGGGATCACGGCTCTGTGGGCGGCGGC
TGCTGCGCTGGTACCGGCGATGCAGAAGGGGAATGACACGGCGAGATCTT
TGCACATCGGTCTCAACGCCCTGAACATGGCGTTGTTTGCATGGCAGGTG
GGTACGGGGTTGGAGATTGCGATTAAAGTTTGGGGGTTCACGAAGTGGCC
GTAGAGAGGAGTGGAGGAAGGGACGGTACAGATGGCGGGGGCTGACGGGG
TAGGTGGGATACAAGAATGAACGGACACACGGCACACTACCTTTTCTTGA
GGGTTGGCTATTGTGTGGTAGCGAGTGATTGATTGAGTGAAGGAAGGAAG
GAGCGCAGATGTAGTTGAGATGTGATTGGGGGATGAGTATCGCTCCATAC
ACGATTGAAGGCACAGCGACAACCATGACAATGACCTTTAGAGATAAGCA
ATCCGTGACTGCTTAAGACGTGGAAAGAGGATTCATAGAGATGATGGGGA
GCTGAACACAAAAAGAAAACAGTTGTTCACAACAACAATTATAAAAATCC
AATGGAAAAACGACACACTCCGTCAGAGCATCATC back to topCoding sequence (CDS) from alignment at chr10:272980..276414+ >NO10G00840.1 ID=NO10G00840.1|Name=NO10G00840.1|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at chr10:272980..276414+ (Nannochloropsis oceanica) ATGAAGGGAGCATTTGCTGTTACCGCCTTGGTCTTAGCCACGGCGTCCTT CCAGGGTGCCGATGCCTTTGTGGGCTCCAGTTTTAAAGCCCGCAGACATG CTCTGCCAAGGCTGCACGCCCGAAAGCCCGACCAGGTTTTCAACACCAAG GAGTCTTTCGCCCCCATCATACCTGGCTTATCCGTTTCCCCCGACCTGCT AGACGTGAAGGAAATGGCCAAAGCCACTGCTTTCATGGCTCCGTTGGTAT TGGGGGCGTCGGATGCCATGGCCAAGGGGGGGGAGTACGGCGTGTTGGAG GGACGAACGTTCGCCTTCGTCCACCCGACGGTGATGGGCATTTTGTTTTT GACGACTGCGTACACGGGGTATTTGGGGTGGCAGTGGCGCTCGATTCGTA CTCTTGCGGGGGATATCAACGCCTTGAAGGAGGCCCTGCCGAAGCTCTCG GATGGCAGTAAAGTGACCATGCCGGTCGCCAAGCAGATTGCTTCGGTGGA AGGGGTATTGAAGAGCATGGGTGAGGGAGACGAAGAAGCAGCGCAGCTTA AGGCTGATTTGAGTGTGTTGCGCTCGGCGACTGTCAAGGAGATCGATGCT CAAGTGGCGGAGTTGAGCGAGAGACGCAAGGCCCTTTTGTCCGGTGACTT CCGGGACCGACATTATAACACCGCATCGACGCTACTGGGTCTTGGTGTCT TCACTTCCATCCTGGGTGGGTTCAACACGTTTTTCCGTGCTGGGAAGTTG TTCCCCGGGCCCCACCTGTACGCTGGTGCGGGGATCACGGCTCTGTGGGC GGCGGCTGCTGCGCTGGTACCGGCGATGCAGAAGGGGAATGACACGGCGA GATCTTTGCACATCGGTCTCAACGCCCTGAACATGGCGTTGTTTGCATGG CAGGTGGGTACGGGGTTGGAGATTGCGATTAAAGTTTGGGGGTTCACGAA GTGGCCGTAG back to top
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