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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr10 | genome | chr10:263182..265284 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO10G00800.1 vs.
Match: EWM25303.1 (transcription factor iiib 90 kda subunit [Nannochloropsis gaditana]) HSP 1 Score: 798.9 bits (2062), Expect = 1.200e-227 Identity = 487/695 (70.07%), Postives = 534/695 (76.83%), Query Frame = 0
Query: 1 MEQILRCPNPDCRGIDLEYSEPDGATICMACHTIVEENAIVSSVEFNENSAGGASTVVGQFVGPEMTKAYSSAGRGRRRFYARDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTLCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTTVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAIYHEKPRTYKDVGRIVRVSPDTIKKRVDEFEKTPISGMMSRDELANMALSEFDISPRMGGGEGGREGAPRLVGEADPPSFTRAVKMKAAEALRKAQALRDEGKDAKGR-GESGKEEEEVTSVNGRESSTSSS--------------SSAAATANS-------SRERGGSMAGARSRKRSRRGGEGEGEEEERGKEDVGPLIREESEG-----GTEEVGLYKELMDQLLDEEEEQANNRAVAADTERAAAQVGINGRINRGGAAGGGAVVTIAAPVVLGAAAVEEIEEKEDEEVAAVVVAEEEKEEEEEVDDTAQYIRSEEEVEKLSKVWHEVHRGYLEKQARKKAEEEAAKKRAEEDFNYRQPGQSNHQKKKAAAAVAAAAAAASVVGAGGSRAAGGMGGGGPARSPAEIAVSNHLAKKRISKKINYEAVKMLGNDDDMDALPPELEAILTQ 669
MEQILRCPNPDCRG DLEYSEPDGATICMACHTIVEENAIVSSVEFNEN+AGGASTVVGQFVGPEMTKAYSSAGRGRRRFY RDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKT+CVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQT VSQLALRLVASMQRDWIQAGRRPSGICGAALYLSA+YHEKPRTYKDVGRIVRVSPDTIKKRVDEFE+TPISGMMSR+ELA MA+S+F+ R R+G +GEADPPSFTRA+KMK +AQAL++ KD + R G KE+E + ++ ++SST S ++AAAT S R RG S+A RS KR RR E EE +ED PL +EE E G + GL+KELMDQLLDEEEE+A AVA E AAA GR GG GG + L + VE A++ ++E +E DDTAQYIRS EVEKLSKVWHEVH+GYLEKQARKKAEEEA KKRAEEDFNYR PGQSN ++K AAAA AA+ + + GAG G + GP RSPAEIAVSNHLAKKRISKKINYEAVKMLGNDDD+DA PPELEA+++Q
Sbjct: 32 MEQILRCPNPDCRGTDLEYSEPDGATICMACHTIVEENAIVSSVEFNENNAGGASTVVGQFVGPEMTKAYSSAGRGRRRFYTRDSRDTTLNNGRRAIQQVVSQLRLRQAFVDRACRLFRTAVERNFVQGRKTMCVVAVCLYMVCREDNSPHMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLELGSEQEQTQVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAVYHEKPRTYKDVGRIVRVSPDTIKKRVDEFERTPISGMMSREELAEMAISDFEDLTR-------RQGPGSYLGEADPPSFTRALKMK------EAQALQEGKKDFEERNGPGAKEQERLATL--KDSSTPSGPGTVSAAAAAVAAVAAAAATIGSKRGGLCRGRGRGASVATIRSSKRVRR---SEPLEEIAQEED--PLPQEEDEDEEGGVGDFDGGLHKELMDQLLDEEEEKAKKIAVA---EAAAAGCQAPGRQQHGGKKGG--------EIALSESGVE-----------ALIGDGVLQDEAKETDDTAQYIRSNAEVEKLSKVWHEVHKGYLEKQARKKAEEEAVKKRAEEDFNYRPPGQSNQRRKAAAAAAAASVVSGAQQGAG---EGGAITPAGPERSPAEIAVSNHLAKKRISKKINYEAVKMLGNDDDLDAHPPELEAMMSQ 681
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO10G00800.1 ID=NO10G00800.1|Name=NO10G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp ATGGAGCAGATCCTCCGCTGCCCTAACCCGGACTGCCGAGGCATTGACCT TGAGTACAGCGAACCCGACGGAGCTACTATCTGCATGGCCTGCCACACCA TCGTAGAAGAAAATGCCATAGTCTCCTCTGTGGAATTCAATGAGAACAGC GCGGGAGGTGCCTCCACAGTGGTCGGACAGTTCGTCGGACCTGAAATGAC TAAGGCCTACAGCTCGGCCGGACGGGGTCGTCGTCGCTTTTATGCACGGG ATTCCCGCGACACCACCTTAAACAATGGCCGCCGTGCCATCCAGCAGGTC GTCTCGCAGCTTAGACTCCGTCAAGCATTCGTTGACCGTGCCTGTCGCTT GTTCCGCACGGCAGTGGAACGGAATTTCGTTCAAGGTCGCAAAACGCTGT GTGTGGTGGCGGTATGCTTGTATATGGTTTGCCGCGAAGACAACTCTCCA CATATGCTCATCGACTTTTCTGACGCCGTTCAAATCAATGTCTACGTCCT CGGGCATGCCTTCCTTAAATTCAAGCAGCTCACCGGCCTTAACCTGGCCG TCATCGACCCTTCCATCTACATCCATCGATTCGCCGCCCGCCTCGAACTC GGCTCCGAACAAGAACAAACCACAGTGTCCCAGCTTGCGCTGCGCCTAGT GGCATCCATGCAACGTGATTGGATCCAAGCCGGTCGTCGTCCCTCCGGTA TCTGTGGCGCGGCCCTCTACCTCTCGGCGATATACCACGAGAAGCCACGG ACCTACAAGGACGTGGGAAGAATAGTCCGAGTCTCGCCCGACACAATCAA AAAACGAGTGGATGAATTTGAAAAAACACCAATATCAGGGATGATGAGTA GAGACGAGCTTGCAAATATGGCGCTGTCAGAGTTTGATATCTCGCCGCGG ATGGGAGGGGGGGAGGGAGGGAGGGAGGGAGCACCTCGCTTGGTGGGGGA GGCGGACCCGCCTTCGTTCACAAGGGCTGTGAAGATGAAGGCAGCGGAGG CGTTAAGAAAGGCACAAGCGCTGAGGGATGAAGGAAAAGACGCAAAGGGG AGGGGAGAGAGTGGGAAAGAAGAGGAAGAGGTGACGTCGGTGAATGGGCG GGAATCGTCCACGTCCTCGTCCTCGTCTGCTGCTGCGACTGCGAACAGTA GCAGGGAGAGAGGTGGTAGCATGGCTGGGGCTCGGAGCAGGAAGAGATCA AGAAGAGGGGGAGAGGGTGAGGGGGAAGAGGAGGAAAGGGGAAAGGAGGA CGTGGGGCCGTTAATTCGGGAGGAGAGTGAGGGAGGGACGGAGGAAGTGG GGTTATACAAGGAGTTGATGGACCAGCTTTTGGATGAAGAGGAGGAGCAA GCAAATAATAGGGCTGTGGCAGCAGATACAGAACGAGCAGCAGCTCAGGT GGGGATCAATGGAAGAATAAATAGAGGAGGAGCAGCAGGAGGAGGAGCAG TAGTGACGATTGCAGCACCTGTGGTGCTTGGGGCAGCAGCAGTCGAGGAA ATAGAGGAGAAAGAGGATGAGGAGGTGGCGGCAGTGGTGGTGGCGGAGGA GGAGAAGGAAGAAGAAGAGGAGGTTGATGACACGGCGCAGTATATCCGCT CGGAGGAGGAGGTGGAAAAATTGAGCAAAGTCTGGCATGAAGTCCACAGA GGCTACCTGGAAAAGCAAGCGAGGAAGAAAGCCGAAGAAGAAGCAGCCAA GAAGCGTGCAGAGGAAGATTTCAATTACCGTCAACCGGGCCAAAGCAACC ACCAGAAGAAGAAGGCGGCTGCAGCAGTGGCTGCTGCGGCGGCGGCCGCC TCGGTAGTGGGGGCCGGGGGGAGTCGAGCAGCGGGAGGAATGGGGGGAGG AGGGCCAGCGCGGTCGCCTGCCGAGATTGCTGTATCAAACCATTTGGCCA AGAAGCGAATTTCAAAGAAGATTAATTATGAGGCGGTCAAGATGTTGGGG AATGATGATGATATGGATGCATTGCCGCCTGAATTGGAGGCGATTTTGAC ACAAGGGAGGGATTAGGGGGGGCCCGGGGAAAGCAGGTAGTGAGGATGGG GTGTACTTTAGTATATACTGCATGATAAAAGAATTAAAAAAGTAGCGGTC AAT back to topprotein sequence of NO10G00800.1 >NO10G00800.1-protein ID=NO10G00800.1-protein|Name=NO10G00800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=672bp MEQILRCPNPDCRGIDLEYSEPDGATICMACHTIVEENAIVSSVEFNENS AGGASTVVGQFVGPEMTKAYSSAGRGRRRFYARDSRDTTLNNGRRAIQQV VSQLRLRQAFVDRACRLFRTAVERNFVQGRKTLCVVAVCLYMVCREDNSP HMLIDFSDAVQINVYVLGHAFLKFKQLTGLNLAVIDPSIYIHRFAARLEL GSEQEQTTVSQLALRLVASMQRDWIQAGRRPSGICGAALYLSAIYHEKPR TYKDVGRIVRVSPDTIKKRVDEFEKTPISGMMSRDELANMALSEFDISPR MGGGEGGREGAPRLVGEADPPSFTRAVKMKAAEALRKAQALRDEGKDAKG RGESGKEEEEVTSVNGRESSTSSSSSAAATANSSRERGGSMAGARSRKRS RRGGEGEGEEEERGKEDVGPLIREESEGGTEEVGLYKELMDQLLDEEEEQ ANNRAVAADTERAAAQVGINGRINRGGAAGGGAVVTIAAPVVLGAAAVEE IEEKEDEEVAAVVVAEEEKEEEEEVDDTAQYIRSEEEVEKLSKVWHEVHR GYLEKQARKKAEEEAAKKRAEEDFNYRQPGQSNHQKKKAAAAVAAAAAAA SVVGAGGSRAAGGMGGGGPARSPAEIAVSNHLAKKRISKKINYEAVKMLG NDDDMDALPPELEAILTQGRD* back to topmRNA from alignment at chr10:263182..265284+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO10G00800.1 ID=NO10G00800.1|Name=NO10G00800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2103bp|location=Sequence derived from alignment at chr10:263182..265284+ (Nannochloropsis oceanica) ATGGAGCAGATCCTCCGCTGCCCTAACCCGGACTGCCGAGGCATTGACCT
TGAGTACAGCGAACCCGACGGAGCTACTATCTGCATGGCCTGCCACACCA
TCGTAGAAGAAAATGCCATAGTCTCCTCTGTGGAATTCAATGAGAACAGC
GCGGGAGGTGCCTCCACAGTGGTCGGACAGTTCGTCGGACCTGAAATGAC
TAAGGCCTACAGCTCGGCCGGACGGGGTCGTCGTCGCTTTTATGCACGGG
ATTCCCGCGACACCACCTTAAACAATGGCCGCCGTGCCATCCAGCAGGTC
GTCTCGCAGCTTAGACTCCGTCAAGCATTCGTTGACCGTGCCTGTCGCTT
GTTCCGCACGGCAGTGGAACGGAATTTCGTTCAAGGTCGCAAAACGCTGT
GTGTGGTGGCGGTATGCTTGTATATGGTTTGCCGCGAAGACAACTCTCCA
CATATGCTCATCGACTTTTCTGACGCCGTTCAAATCAATGTCTACGTCCT
CGGGCATGCCTTCCTTAAATTCAAGCAGCTCACCGGCCTTAACCTGGCCG
TCATCGACCCTTCCATCTACATCCATCGATTCGCCGCCCGCCTCGAACTC
GGCTCCGAACAAGAACAAACCACAGTGTCCCAGCTTGCGCTGCGCCTAGT
GGCATCCATGCAACGTGATTGGATCCAAGCCGGTCGTCGTCCCTCCGGTA
TCTGTGGCGCGGCCCTCTACCTCTCGGCGATATACCACGAGAAGCCACGG
ACCTACAAGGACGTGGGAAGAATAGTCCGAGTCTCGCCCGACACAATCAA
AAAACGAGTGGATGAATTTGAAAAAACACCAATATCAGGGATGATGAGTA
GAGACGAGCTTGCAAATATGGCGCTGTCAGAGTTTGATATCTCGCCGCGG
ATGGGAGGGGGGGAGGGAGGGAGGGAGGGAGCACCTCGCTTGGTGGGGGA
GGCGGACCCGCCTTCGTTCACAAGGGCTGTGAAGATGAAGGCAGCGGAGG
CGTTAAGAAAGGCACAAGCGCTGAGGGATGAAGGAAAAGACGCAAAGGGG
AGGGGAGAGAGTGGGAAAGAAGAGGAAGAGGTGACGTCGGTGAATGGGCG
GGAATCGTCCACGTCCTCGTCCTCGTCTGCTGCTGCGACTGCGAACAGTA
GCAGGGAGAGAGGTGGTAGCATGGCTGGGGCTCGGAGCAGGAAGAGATCA
AGAAGAGGGGGAGAGGGTGAGGGGGAAGAGGAGGAAAGGGGAAAGGAGGA
CGTGGGGCCGTTAATTCGGGAGGAGAGTGAGGGAGGGACGGAGGAAGTGG
GGTTATACAAGGAGTTGATGGACCAGCTTTTGGATGAAGAGGAGGAGCAA
GCAAATAATAGGGCTGTGGCAGCAGATACAGAACGAGCAGCAGCTCAGGT
GGGGATCAATGGAAGAATAAATAGAGGAGGAGCAGCAGGAGGAGGAGCAG
TAGTGACGATTGCAGCACCTGTGGTGCTTGGGGCAGCAGCAGTCGAGGAA
ATAGAGGAGAAAGAGGATGAGGAGGTGGCGGCAGTGGTGGTGGCGGAGGA
GGAGAAGGAAGAAGAAGAGGAGGTTGATGACACGGCGCAGTATATCCGCT
CGGAGGAGGAGGTGGAAAAATTGAGCAAAGTCTGGCATGAAGTCCACAGA
GGCTACCTGGAAAAGCAAGCGAGGAAGAAAGCCGAAGAAGAAGCAGCCAA
GAAGCGTGCAGAGGAAGATTTCAATTACCGTCAACCGGGCCAAAGCAACC
ACCAGAAGAAGAAGGCGGCTGCAGCAGTGGCTGCTGCGGCGGCGGCCGCC
TCGGTAGTGGGGGCCGGGGGGAGTCGAGCAGCGGGAGGAATGGGGGGAGG
AGGGCCAGCGCGGTCGCCTGCCGAGATTGCTGTATCAAACCATTTGGCCA
AGAAGCGAATTTCAAAGAAGATTAATTATGAGGCGGTCAAGATGTTGGGG
AATGATGATGATATGGATGCATTGCCGCCTGAATTGGAGGCGATTTTGAC
ACAAGGGAGGGATTAGGGGGGGCCCGGGGAAAGCAGGTAGTGAGGATGGG
GTGTACTTTAGTATATACTGCATGATAAAAGAATTAAAAAAGTAGCGGTC
AAT back to topCoding sequence (CDS) from alignment at chr10:263182..265284+ >NO10G00800.1 ID=NO10G00800.1|Name=NO10G00800.1|organism=Nannochloropsis oceanica|type=CDS|length=2016bp|location=Sequence derived from alignment at chr10:263182..265284+ (Nannochloropsis oceanica) ATGGAGCAGATCCTCCGCTGCCCTAACCCGGACTGCCGAGGCATTGACCT TGAGTACAGCGAACCCGACGGAGCTACTATCTGCATGGCCTGCCACACCA TCGTAGAAGAAAATGCCATAGTCTCCTCTGTGGAATTCAATGAGAACAGC GCGGGAGGTGCCTCCACAGTGGTCGGACAGTTCGTCGGACCTGAAATGAC TAAGGCCTACAGCTCGGCCGGACGGGGTCGTCGTCGCTTTTATGCACGGG ATTCCCGCGACACCACCTTAAACAATGGCCGCCGTGCCATCCAGCAGGTC GTCTCGCAGCTTAGACTCCGTCAAGCATTCGTTGACCGTGCCTGTCGCTT GTTCCGCACGGCAGTGGAACGGAATTTCGTTCAAGGTCGCAAAACGCTGT GTGTGGTGGCGGTATGCTTGTATATGGTTTGCCGCGAAGACAACTCTCCA CATATGCTCATCGACTTTTCTGACGCCGTTCAAATCAATGTCTACGTCCT CGGGCATGCCTTCCTTAAATTCAAGCAGCTCACCGGCCTTAACCTGGCCG TCATCGACCCTTCCATCTACATCCATCGATTCGCCGCCCGCCTCGAACTC GGCTCCGAACAAGAACAAACCACAGTGTCCCAGCTTGCGCTGCGCCTAGT GGCATCCATGCAACGTGATTGGATCCAAGCCGGTCGTCGTCCCTCCGGTA TCTGTGGCGCGGCCCTCTACCTCTCGGCGATATACCACGAGAAGCCACGG ACCTACAAGGACGTGGGAAGAATAGTCCGAGTCTCGCCCGACACAATCAA AAAACGAGTGGATGAATTTGAAAAAACACCAATATCAGGGATGATGAGTA GAGACGAGCTTGCAAATATGGCGCTGTCAGAGTTTGATATCTCGCCGCGG ATGGGAGGGGGGGAGGGAGGGAGGGAGGGAGCACCTCGCTTGGTGGGGGA GGCGGACCCGCCTTCGTTCACAAGGGCTGTGAAGATGAAGGCAGCGGAGG CGTTAAGAAAGGCACAAGCGCTGAGGGATGAAGGAAAAGACGCAAAGGGG AGGGGAGAGAGTGGGAAAGAAGAGGAAGAGGTGACGTCGGTGAATGGGCG GGAATCGTCCACGTCCTCGTCCTCGTCTGCTGCTGCGACTGCGAACAGTA GCAGGGAGAGAGGTGGTAGCATGGCTGGGGCTCGGAGCAGGAAGAGATCA AGAAGAGGGGGAGAGGGTGAGGGGGAAGAGGAGGAAAGGGGAAAGGAGGA CGTGGGGCCGTTAATTCGGGAGGAGAGTGAGGGAGGGACGGAGGAAGTGG GGTTATACAAGGAGTTGATGGACCAGCTTTTGGATGAAGAGGAGGAGCAA GCAAATAATAGGGCTGTGGCAGCAGATACAGAACGAGCAGCAGCTCAGGT GGGGATCAATGGAAGAATAAATAGAGGAGGAGCAGCAGGAGGAGGAGCAG TAGTGACGATTGCAGCACCTGTGGTGCTTGGGGCAGCAGCAGTCGAGGAA ATAGAGGAGAAAGAGGATGAGGAGGTGGCGGCAGTGGTGGTGGCGGAGGA GGAGAAGGAAGAAGAAGAGGAGGTTGATGACACGGCGCAGTATATCCGCT CGGAGGAGGAGGTGGAAAAATTGAGCAAAGTCTGGCATGAAGTCCACAGA GGCTACCTGGAAAAGCAAGCGAGGAAGAAAGCCGAAGAAGAAGCAGCCAA GAAGCGTGCAGAGGAAGATTTCAATTACCGTCAACCGGGCCAAAGCAACC ACCAGAAGAAGAAGGCGGCTGCAGCAGTGGCTGCTGCGGCGGCGGCCGCC TCGGTAGTGGGGGCCGGGGGGAGTCGAGCAGCGGGAGGAATGGGGGGAGG AGGGCCAGCGCGGTCGCCTGCCGAGATTGCTGTATCAAACCATTTGGCCA AGAAGCGAATTTCAAAGAAGATTAATTATGAGGCGGTCAAGATGTTGGGG AATGATGATGATATGGATGCATTGCCGCCTGAATTGGAGGCGATTTTGAC ACAAGGGAGGGATTAG back to top
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