NO10G00670.1, NO10G00670.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO10G00670.1
Unique Name	NO10G00670.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1707
Alignment location	chr10:223090..224796 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr10	genome	chr10:223090..224796 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO10G00670.1 vs.

BLAST of NO10G00670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO10G00670	NO10G00670	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00670.1	NO10G00670.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO10G00670.1.cds1	NO10G00670.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr10:223090..224796-
coding sequence from alignment at chr10:223090..224796-

mRNA sequence

>NO10G00670.1 ID=NO10G00670.1|Name=NO10G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1707bp
ATGCCGTCCTTCTACCAGAAGCAACAAGACCGAAAGAGGAGGCAAGAGGA
GGCAGCGGCAGGAGCAGCTGCGGCTGCGGTAACTGCGGCTCAGCCACCAT
CGTTGCTACCATTGCTGGCCCCGCTGCCTAGTGGCGGGGGAGGCCCCTCA
TGCAGTAGCAACCTCGTAGACCACCACCGGCATGCCACCTCCAGCAACAG
CCATCTGTCATTCATGCCTCCCTCCCTGTCTTCCCCACCTGCATCCATGC
TCGCCTCCTCGCTAGGGTCTCCACCTTCCCCTTCCTTACTGTTTAGCAGC
CAGTTCACCAGTCGATTTGAGGCTTCCTCGTCGGCCTGGCCCCCTACGAG
TACCAGCAGCGGTGGCGGCGGTGGTGGTAGGGGCCATGGTGGTGGCGCAG
GCGGCACGTTTGGTACGACCAATACCACTTTCAACAATACCACCAGCATC
ACAACTCCATGCTCAGAAGTAGACCCCACTCCACCGCCCCCACACTTGCT
TCTCGGCCGCATGTCAGCCCAAGCCCCAGTACCACCATCGGCAACAGAAG
TAAGAACAGCAACATCAACAAGGAGAAGAAGAACAACAGTATCCGCAGCC
ATAGGTCCACATGCGTCTCCTCCTCCTTCTCCCCAACACAGTCTGATAGG
GGGGTATGTGGGTGGTGCTGGTGAAGGGGAAGGGGGGGGGAATCTCGCCA
TGTCGGAGAAGGCGCCAACTGAGTTTGGTGACCCTGATTACCAATTTCTT
TTGGATTCATTGGTGGCAGACGGGGACGGAAACTGGTTCGCTGACGAGGA
GGAGGAGAGGGACCCTACGTATGACCCGAATGAGGAGGAAGAGGAGGAAG
AGGAGGAGAGCGACGACGATGACGATGTCGATAGTACGAGTAGGGATAGT
GGGAGCAGTAGCACCAGCAGCAGCAGTGGTGATGATTTTGAAGACGATGA
AGACGATGCGATTCCTTTACAAGAGGTAGAGGAGCTGCTGGCCGAGACAG
GTGCAATGAGCTACCTCGCCAATCTCCCGCAACAGCACGTCCAGGCCCAC
GCCCCTACAGCAGCACCTACACGCAATGCCCAAGGCCGCCTACTCGTCCC
CCTCCTGCCCTCCCACCCTGGTCCTCGCTTTGGTCTCTCCCCCGGCACCT
GGCAGGCACTCATGCACACCGGCGTGAGGGAAGATGAACGGGGTCGACTC
GCCTCTCAAATGGTCCGACACTTGCAGTTACTGGTTCAAAACGGCGCCGT
TATGGCCCATAATCTTGCCTTAAATCAAGGAGGAGAAGGGGAGGGAGAGA
GAGAGGAGAAGGAGGCGTTTCTGGACGTGCAGGCCATGGTGAAGGACGTG
CATACATTGCGAGATAAGGCGTGGCGTTATTTCGGGTTTGAGCCGGGACC
GACCGGGAAAGGTGCGTATCGAGAGCGTTTAGTGTCTACCAGCACTGCTG
CTGCTACTGCTACTGGTGATGGAGCAGGAGGAGGAGGAGGAAGGGATAGA
GGGGGGGGAGCGGGAGCAACAGAGGGACGAAGAAGAAAAAGGAACAGCAG
AAACAGGTCGTCCTCCAGCAGCAGCAGTTGCAGCAGCAAGGGAAGAGAGA
TCATCGCTTCACCCGTGGCGCTGCCCAGAGAATTGAAGGGCGATCAAAGT
CTCTTATGGACGTACCAGGAATCGCGGCTGCTGCTGAGCTCGTCTGCGTC
AGATTAG

protein sequence of NO10G00670.1

>NO10G00670.1-protein ID=NO10G00670.1-protein|Name=NO10G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=569bp
MPSFYQKQQDRKRRQEEAAAGAAAAAVTAAQPPSLLPLLAPLPSGGGGPS
CSSNLVDHHRHATSSNSHLSFMPPSLSSPPASMLASSLGSPPSPSLLFSS
QFTSRFEASSSAWPPTSTSSGGGGGGRGHGGGAGGTFGTTNTTFNNTTSI
TTPCSEVDPTPPPPHLLLGRMSAQAPVPPSATEVRTATSTRRRRTTVSAA
IGPHASPPPSPQHSLIGGYVGGAGEGEGGGNLAMSEKAPTEFGDPDYQFL
LDSLVADGDGNWFADEEEERDPTYDPNEEEEEEEEESDDDDDVDSTSRDS
GSSSTSSSSGDDFEDDEDDAIPLQEVEELLAETGAMSYLANLPQQHVQAH
APTAAPTRNAQGRLLVPLLPSHPGPRFGLSPGTWQALMHTGVREDERGRL
ASQMVRHLQLLVQNGAVMAHNLALNQGGEGEGEREEKEAFLDVQAMVKDV
HTLRDKAWRYFGFEPGPTGKGAYRERLVSTSTAAATATGDGAGGGGGRDR
GGGAGATEGRRRKRNSRNRSSSSSSSCSSKGREIIASPVALPRELKGDQS
LLWTYQESRLLLSSSASD*

mRNA from alignment at chr10:223090..224796-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO10G00670.1 ID=NO10G00670.1|Name=NO10G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1707bp|location=Sequence derived from alignment at chr10:223090..224796- (Nannochloropsis oceanica)
ATGCCGTCCTTCTACCAGAAGCAACAAGACCGAAAGAGGAGGCAAGAGGA
GGCAGCGGCAGGAGCAGCTGCGGCTGCGGTAACTGCGGCTCAGCCACCAT
CGTTGCTACCATTGCTGGCCCCGCTGCCTAGTGGCGGGGGAGGCCCCTCA
TGCAGTAGCAACCTCGTAGACCACCACCGGCATGCCACCTCCAGCAACAG
CCATCTGTCATTCATGCCTCCCTCCCTGTCTTCCCCACCTGCATCCATGC
TCGCCTCCTCGCTAGGGTCTCCACCTTCCCCTTCCTTACTGTTTAGCAGC
CAGTTCACCAGTCGATTTGAGGCTTCCTCGTCGGCCTGGCCCCCTACGAG
TACCAGCAGCGGTGGCGGCGGTGGTGGTAGGGGCCATGGTGGTGGCGCAG
GCGGCACGTTTGGTACGACCAATACCACTTTCAACAATACCACCAGCATC
ACAACTCCATGCTCAGAAGTAGACCCCACTCCACCGCCCCCACACTTGCT
TCTCGGCCGCATGTCAGCCCAAGCCCCAGTACCACCATCGGCAACAGAAG
TAAGAACAGCAACATCAACAAGGAGAAGAAGAACAACAGTATCCGCAGCC
ATAGGTCCACATGCGTCTCCTCCTCCTTCTCCCCAACACAGTCTGATAGG
GGGGTATGTGGGTGGTGCTGGTGAAGGGGAAGGGGGGGGGAATCTCGCCA
TGTCGGAGAAGGCGCCAACTGAGTTTGGTGACCCTGATTACCAATTTCTT
TTGGATTCATTGGTGGCAGACGGGGACGGAAACTGGTTCGCTGACGAGGA
GGAGGAGAGGGACCCTACGTATGACCCGAATGAGGAGGAAGAGGAGGAAG
AGGAGGAGAGCGACGACGATGACGATGTCGATAGTACGAGTAGGGATAGT
GGGAGCAGTAGCACCAGCAGCAGCAGTGGTGATGATTTTGAAGACGATGA
AGACGATGCGATTCCTTTACAAGAGGTAGAGGAGCTGCTGGCCGAGACAG
GTGCAATGAGCTACCTCGCCAATCTCCCGCAACAGCACGTCCAGGCCCAC
GCCCCTACAGCAGCACCTACACGCAATGCCCAAGGCCGCCTACTCGTCCC
CCTCCTGCCCTCCCACCCTGGTCCTCGCTTTGGTCTCTCCCCCGGCACCT
GGCAGGCACTCATGCACACCGGCGTGAGGGAAGATGAACGGGGTCGACTC
GCCTCTCAAATGGTCCGACACTTGCAGTTACTGGTTCAAAACGGCGCCGT
TATGGCCCATAATCTTGCCTTAAATCAAGGAGGAGAAGGGGAGGGAGAGA
GAGAGGAGAAGGAGGCGTTTCTGGACGTGCAGGCCATGGTGAAGGACGTG
CATACATTGCGAGATAAGGCGTGGCGTTATTTCGGGTTTGAGCCGGGACC
GACCGGGAAAGGTGCGTATCGAGAGCGTTTAGTGTCTACCAGCACTGCTG
CTGCTACTGCTACTGGTGATGGAGCAGGAGGAGGAGGAGGAAGGGATAGA
GGGGGGGGAGCGGGAGCAACAGAGGGACGAAGAAGAAAAAGGAACAGCAG
AAACAGGTCGTCCTCCAGCAGCAGCAGTTGCAGCAGCAAGGGAAGAGAGA
TCATCGCTTCACCCGTGGCGCTGCCCAGAGAATTGAAGGGCGATCAAAGT
CTCTTATGGACGTACCAGGAATCGCGGCTGCTGCTGAGCTCGTCTGCGTC
AGATTAG

Coding sequence (CDS) from alignment at chr10:223090..224796-

>NO10G00670.1 ID=NO10G00670.1|Name=NO10G00670.1|organism=Nannochloropsis oceanica|type=CDS|length=1707bp|location=Sequence derived from alignment at chr10:223090..224796- (Nannochloropsis oceanica)
ATGCCGTCCTTCTACCAGAAGCAACAAGACCGAAAGAGGAGGCAAGAGGA
GGCAGCGGCAGGAGCAGCTGCGGCTGCGGTAACTGCGGCTCAGCCACCAT
CGTTGCTACCATTGCTGGCCCCGCTGCCTAGTGGCGGGGGAGGCCCCTCA
TGCAGTAGCAACCTCGTAGACCACCACCGGCATGCCACCTCCAGCAACAG
CCATCTGTCATTCATGCCTCCCTCCCTGTCTTCCCCACCTGCATCCATGC
TCGCCTCCTCGCTAGGGTCTCCACCTTCCCCTTCCTTACTGTTTAGCAGC
CAGTTCACCAGTCGATTTGAGGCTTCCTCGTCGGCCTGGCCCCCTACGAG
TACCAGCAGCGGTGGCGGCGGTGGTGGTAGGGGCCATGGTGGTGGCGCAG
GCGGCACGTTTGGTACGACCAATACCACTTTCAACAATACCACCAGCATC
ACAACTCCATGCTCAGAAGTAGACCCCACTCCACCGCCCCCACACTTGCT
TCTCGGCCGCATGTCAGCCCAAGCCCCAGTACCACCATCGGCAACAGAAG
TAAGAACAGCAACATCAACAAGGAGAAGAAGAACAACAGTATCCGCAGCC
ATAGGTCCACATGCGTCTCCTCCTCCTTCTCCCCAACACAGTCTGATAGG
GGGGTATGTGGGTGGTGCTGGTGAAGGGGAAGGGGGGGGGAATCTCGCCA
TGTCGGAGAAGGCGCCAACTGAGTTTGGTGACCCTGATTACCAATTTCTT
TTGGATTCATTGGTGGCAGACGGGGACGGAAACTGGTTCGCTGACGAGGA
GGAGGAGAGGGACCCTACGTATGACCCGAATGAGGAGGAAGAGGAGGAAG
AGGAGGAGAGCGACGACGATGACGATGTCGATAGTACGAGTAGGGATAGT
GGGAGCAGTAGCACCAGCAGCAGCAGTGGTGATGATTTTGAAGACGATGA
AGACGATGCGATTCCTTTACAAGAGGTAGAGGAGCTGCTGGCCGAGACAG
GTGCAATGAGCTACCTCGCCAATCTCCCGCAACAGCACGTCCAGGCCCAC
GCCCCTACAGCAGCACCTACACGCAATGCCCAAGGCCGCCTACTCGTCCC
CCTCCTGCCCTCCCACCCTGGTCCTCGCTTTGGTCTCTCCCCCGGCACCT
GGCAGGCACTCATGCACACCGGCGTGAGGGAAGATGAACGGGGTCGACTC
GCCTCTCAAATGGTCCGACACTTGCAGTTACTGGTTCAAAACGGCGCCGT
TATGGCCCATAATCTTGCCTTAAATCAAGGAGGAGAAGGGGAGGGAGAGA
GAGAGGAGAAGGAGGCGTTTCTGGACGTGCAGGCCATGGTGAAGGACGTG
CATACATTGCGAGATAAGGCGTGGCGTTATTTCGGGTTTGAGCCGGGACC
GACCGGGAAAGGTGCGTATCGAGAGCGTTTAGTGTCTACCAGCACTGCTG
CTGCTACTGCTACTGGTGATGGAGCAGGAGGAGGAGGAGGAAGGGATAGA
GGGGGGGGAGCGGGAGCAACAGAGGGACGAAGAAGAAAAAGGAACAGCAG
AAACAGGTCGTCCTCCAGCAGCAGCAGTTGCAGCAGCAAGGGAAGAGAGA
TCATCGCTTCACCCGTGGCGCTGCCCAGAGAATTGAAGGGCGATCAAAGT
CTCTTATGGACGTACCAGGAATCGCGGCTGCTGCTGAGCTCGTCTGCGTC
AGATTAG

Synonyms

Publications