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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:1413532..1415343 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G05300.1 vs.
Match: EWM22748.1 (hypothetical protein Naga_100143g3 [Nannochloropsis gaditana]) HSP 1 Score: 204.9 bits (520), Expect = 7.000e-49 Identity = 233/603 (38.64%), Postives = 296/603 (49.09%), Query Frame = 0
Query: 18 SDEQLLRDFREAKQSILTSTTAHNLATSPPP-RRTAELN---LGDGQLQREITSIVEMPRLERAAAASERKGDDD------PFKWVDEQSDVRVNCVPAADPLSPSGVSS----RASSPNSTSSSEENNDDERSASSCRSRSRANPITSTPSLYSSSSSSSSSPSSSSSSSFSSPPQSQFFD-ASMANKPFSFAEELQWPRKQDQQFWQHQPQEQPQPAQTFSIPFTRAATTPAAAHSTSLLAMLQEEKEQGRQQAARIKELELACVEIQQECQVAIAAARLESHELKCMLRRMASESTFADVFQVYEAHIARVEQEVQILRARNIHLEERRQQHQSHQQQQEQQRQQEEEEKEEEEEEEGLQPTSVGQND--DGEGHDHSINDGEEDRDGSIHHNGNSSLERRGLLSVGTTAAAKLRQSLKARSDVVYHHGKCRGHECKPSSSTNAKSKHSISGAVNGTPKQYEAGRSTATASMTALRCRIKDLQRQVDDFKKETGELRRRERQSLVQKRVVETTWARVMKVQAMAKGLEGSLASSRLEGARAEARLEEAEEEIRVLRQREAALVLDRDKLLLELDLLHRKQLGGGGN--GPSSRQGGESRE 602
SD+ LRDFRE KQSIL S + P P RR +E++ + L +EI SIV++ + E AA G K + D C PAA PLS S SS RASSP ST S S S SS SP++ P F D + N+ S+ + + Q+ Q QP P+ S A P+ S +LL ML EEKE+G+ Q ARI+ LE+A E QE +VA+A+ARLE HEL+ MLRR+ASESTF+DVF +YEAHIARVE+E +LR RN+HLE R QRQQ EE + + G+ D GEG N + N R+ L A + + + + + + G + P+ A + G V +Q +D K+ETGELRRRERQ LVQKR+VETTWARV KVQ MAKGLE SLASSRL+GARAEARLEEAE EIR LRQREA LV+DRD+ L EL+++ R+QLGG GN G + +G RE
Sbjct: 20 SDDNWLRDFREMKQSILMSPAGTSSTGFPSPARRISEVDPAAVNGDHLDQEIKSIVDILQDEDAANKKLNIGSSHHPVIGGKEKAIKGPYDRLTGCAPAASPLSSSSSSSSESSRASSPESTPSPGHGGFKNSS---------------------SHESSCYSPNAYQILRSEQPLAPPFIDDPTEDNRKPSYTDMHRTTNYQELH--QAQPSWAPETQHEES----SLARPPSDIASGNLLRMLYEEKERGQGQKARIQGLEVALAETTQEKEVAMASARLEIHELRGMLRRVASESTFSDVFTLYEAHIARVEKEANVLRDRNVHLEAWRL----------DQRQQSEESRGQ------------GRADACGGEGDSQGCNRPDRPTPSPSRKN------RKSLYGATKPAPHNAQDTFWSPTSALSTAMRMNGSQPAPTGVLVA-----LKGKVKELQRQV-------------------------NDLKQETGELRRRERQFLVQKRMVETTWARVQKVQFMAKGLESSLASSRLDGARAEARLEEAEGEIRALRQREAVLVMDRDRCLQELEVI-RRQLGGVGNARGSAFSKGTHGRE 536
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G05300.1 ID=NO01G05300.1|Name=NO01G05300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp ATGTCGACGCCTCCAGGCAGGAGCAACACTACCGCATTGGCCAGAATCAG CAGCGACGAACAATTGCTACGTGACTTTCGGGAGGCGAAGCAGTCCATCC TGACATCGACGACGGCGCATAACCTCGCCACATCCCCTCCGCCACGACGC ACAGCAGAATTGAATTTGGGCGATGGACAGCTTCAGCGCGAGATCACGTC CATTGTCGAGATGCCCCGACTGGAAAGGGCAGCAGCTGCATCAGAACGAA AAGGAGATGATGACCCGTTTAAATGGGTAGATGAACAGAGCGATGTACGG GTGAATTGCGTGCCAGCAGCCGACCCTTTGTCGCCATCGGGAGTCTCGTC TCGGGCCTCCTCGCCCAACAGCACTTCCTCGTCTGAGGAAAACAACGACG ACGAAAGGAGCGCCAGCAGCTGCCGCAGTAGAAGTCGAGCAAACCCTATA ACTAGCACTCCGTCTCTGTACTCTTCTTCTTCTTCCTCCTCCTCCTCACC TTCCTCTTCTTCATCCTCCTCTTTTTCTTCCCCTCCCCAGTCGCAATTTT TCGATGCCTCGATGGCGAACAAGCCCTTCTCCTTCGCCGAGGAATTGCAG TGGCCCCGAAAACAAGACCAGCAGTTCTGGCAGCATCAGCCGCAGGAGCA GCCTCAGCCAGCCCAAACATTTTCGATACCGTTTACGCGTGCAGCAACCA CTCCTGCTGCCGCCCATTCGACCTCCTTGCTCGCCATGCTGCAGGAGGAA AAGGAGCAAGGCCGGCAGCAAGCAGCCCGCATCAAGGAGTTAGAGCTTGC TTGTGTCGAAATCCAGCAGGAGTGTCAGGTGGCAATTGCAGCGGCCCGCT TGGAGAGTCACGAGCTCAAGTGCATGCTGCGGCGGATGGCCTCTGAGAGT ACCTTCGCCGACGTCTTCCAGGTCTACGAGGCACACATTGCCCGCGTGGA GCAGGAGGTGCAAATATTGCGGGCGCGCAACATACACCTGGAGGAGCGTC GTCAGCAGCATCAATCTCACCAGCAGCAGCAGGAGCAGCAGCGGCAGCAG GAGGAGGAGGAGAAGGAGGAGGAGGAAGAGGAGGAGGGCCTTCAACCGAC GTCCGTAGGGCAGAACGATGATGGAGAAGGCCATGACCACAGCATCAACG ACGGTGAGGAGGATAGAGACGGTAGTATCCACCATAACGGCAACTCGTCT CTGGAGCGTCGAGGGCTTCTCTCGGTGGGCACGACTGCGGCAGCCAAACT CAGGCAGAGTCTGAAGGCCAGGTCCGATGTCGTCTACCACCACGGCAAGT GCCGAGGCCACGAATGCAAACCCTCCAGCAGCACAAATGCCAAGTCCAAG CACAGCATCAGCGGAGCCGTGAATGGCACACCAAAGCAGTATGAGGCCGG TAGATCCACTGCCACAGCATCGATGACTGCTTTGCGATGCAGAATCAAGG ACTTGCAGCGCCAGGTGGATGACTTCAAAAAGGAAACAGGAGAGCTGCGG CGACGGGAGCGACAATCTTTGGTGCAAAAGCGGGTAGTGGAGACGACATG GGCCCGCGTGATGAAGGTCCAGGCCATGGCCAAGGGGCTGGAGGGCAGCC TGGCTTCGAGTAGGTTGGAGGGTGCTCGTGCAGAGGCTCGGCTAGAGGAG GCAGAGGAGGAGATTCGAGTACTACGCCAGAGGGAGGCTGCCTTGGTTCT GGACCGTGACAAGTTATTGCTGGAACTCGATCTCCTGCACCGGAAACAGC TCGGTGGCGGTGGCAACGGCCCCTCGTCCCGGCAAGGTGGTGAGAGTAGG GAGACGAGATAA back to topprotein sequence of NO01G05300.1 >NO01G05300.1-protein ID=NO01G05300.1-protein|Name=NO01G05300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=604bp MSTPPGRSNTTALARISSDEQLLRDFREAKQSILTSTTAHNLATSPPPRR TAELNLGDGQLQREITSIVEMPRLERAAAASERKGDDDPFKWVDEQSDVR VNCVPAADPLSPSGVSSRASSPNSTSSSEENNDDERSASSCRSRSRANPI TSTPSLYSSSSSSSSSPSSSSSSSFSSPPQSQFFDASMANKPFSFAEELQ WPRKQDQQFWQHQPQEQPQPAQTFSIPFTRAATTPAAAHSTSLLAMLQEE KEQGRQQAARIKELELACVEIQQECQVAIAAARLESHELKCMLRRMASES TFADVFQVYEAHIARVEQEVQILRARNIHLEERRQQHQSHQQQQEQQRQQ EEEEKEEEEEEEGLQPTSVGQNDDGEGHDHSINDGEEDRDGSIHHNGNSS LERRGLLSVGTTAAAKLRQSLKARSDVVYHHGKCRGHECKPSSSTNAKSK HSISGAVNGTPKQYEAGRSTATASMTALRCRIKDLQRQVDDFKKETGELR RRERQSLVQKRVVETTWARVMKVQAMAKGLEGSLASSRLEGARAEARLEE AEEEIRVLRQREAALVLDRDKLLLELDLLHRKQLGGGGNGPSSRQGGESR ETR* back to topmRNA from alignment at chr1:1413532..1415343- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G05300.1 ID=NO01G05300.1|Name=NO01G05300.1|organism=Nannochloropsis oceanica|type=mRNA|length=1812bp|location=Sequence derived from alignment at chr1:1413532..1415343- (Nannochloropsis oceanica) ATGTCGACGCCTCCAGGCAGGAGCAACACTACCGCATTGGCCAGAATCAG
CAGCGACGAACAATTGCTACGTGACTTTCGGGAGGCGAAGCAGTCCATCC
TGACATCGACGACGGCGCATAACCTCGCCACATCCCCTCCGCCACGACGC
ACAGCAGAATTGAATTTGGGCGATGGACAGCTTCAGCGCGAGATCACGTC
CATTGTCGAGATGCCCCGACTGGAAAGGGCAGCAGCTGCATCAGAACGAA
AAGGAGATGATGACCCGTTTAAATGGGTAGATGAACAGAGCGATGTACGG
GTGAATTGCGTGCCAGCAGCCGACCCTTTGTCGCCATCGGGAGTCTCGTC
TCGGGCCTCCTCGCCCAACAGCACTTCCTCGTCTGAGGAAAACAACGACG
ACGAAAGGAGCGCCAGCAGCTGCCGCAGTAGAAGTCGAGCAAACCCTATA
ACTAGCACTCCGTCTCTGTACTCTTCTTCTTCTTCCTCCTCCTCCTCACC
TTCCTCTTCTTCATCCTCCTCTTTTTCTTCCCCTCCCCAGTCGCAATTTT
TCGATGCCTCGATGGCGAACAAGCCCTTCTCCTTCGCCGAGGAATTGCAG
TGGCCCCGAAAACAAGACCAGCAGTTCTGGCAGCATCAGCCGCAGGAGCA
GCCTCAGCCAGCCCAAACATTTTCGATACCGTTTACGCGTGCAGCAACCA
CTCCTGCTGCCGCCCATTCGACCTCCTTGCTCGCCATGCTGCAGGAGGAA
AAGGAGCAAGGCCGGCAGCAAGCAGCCCGCATCAAGGAGTTAGAGCTTGC
TTGTGTCGAAATCCAGCAGGAGTGTCAGGTGGCAATTGCAGCGGCCCGCT
TGGAGAGTCACGAGCTCAAGTGCATGCTGCGGCGGATGGCCTCTGAGAGT
ACCTTCGCCGACGTCTTCCAGGTCTACGAGGCACACATTGCCCGCGTGGA
GCAGGAGGTGCAAATATTGCGGGCGCGCAACATACACCTGGAGGAGCGTC
GTCAGCAGCATCAATCTCACCAGCAGCAGCAGGAGCAGCAGCGGCAGCAG
GAGGAGGAGGAGAAGGAGGAGGAGGAAGAGGAGGAGGGCCTTCAACCGAC
GTCCGTAGGGCAGAACGATGATGGAGAAGGCCATGACCACAGCATCAACG
ACGGTGAGGAGGATAGAGACGGTAGTATCCACCATAACGGCAACTCGTCT
CTGGAGCGTCGAGGGCTTCTCTCGGTGGGCACGACTGCGGCAGCCAAACT
CAGGCAGAGTCTGAAGGCCAGGTCCGATGTCGTCTACCACCACGGCAAGT
GCCGAGGCCACGAATGCAAACCCTCCAGCAGCACAAATGCCAAGTCCAAG
CACAGCATCAGCGGAGCCGTGAATGGCACACCAAAGCAGTATGAGGCCGG
TAGATCCACTGCCACAGCATCGATGACTGCTTTGCGATGCAGAATCAAGG
ACTTGCAGCGCCAGGTGGATGACTTCAAAAAGGAAACAGGAGAGCTGCGG
CGACGGGAGCGACAATCTTTGGTGCAAAAGCGGGTAGTGGAGACGACATG
GGCCCGCGTGATGAAGGTCCAGGCCATGGCCAAGGGGCTGGAGGGCAGCC
TGGCTTCGAGTAGGTTGGAGGGTGCTCGTGCAGAGGCTCGGCTAGAGGAG
GCAGAGGAGGAGATTCGAGTACTACGCCAGAGGGAGGCTGCCTTGGTTCT
GGACCGTGACAAGTTATTGCTGGAACTCGATCTCCTGCACCGGAAACAGC
TCGGTGGCGGTGGCAACGGCCCCTCGTCCCGGCAAGGTGGTGAGAGTAGG
GAGACGAGATAA back to topCoding sequence (CDS) from alignment at chr1:1413532..1415343- >NO01G05300.1 ID=NO01G05300.1|Name=NO01G05300.1|organism=Nannochloropsis oceanica|type=CDS|length=1812bp|location=Sequence derived from alignment at chr1:1413532..1415343- (Nannochloropsis oceanica) ATGTCGACGCCTCCAGGCAGGAGCAACACTACCGCATTGGCCAGAATCAG CAGCGACGAACAATTGCTACGTGACTTTCGGGAGGCGAAGCAGTCCATCC TGACATCGACGACGGCGCATAACCTCGCCACATCCCCTCCGCCACGACGC ACAGCAGAATTGAATTTGGGCGATGGACAGCTTCAGCGCGAGATCACGTC CATTGTCGAGATGCCCCGACTGGAAAGGGCAGCAGCTGCATCAGAACGAA AAGGAGATGATGACCCGTTTAAATGGGTAGATGAACAGAGCGATGTACGG GTGAATTGCGTGCCAGCAGCCGACCCTTTGTCGCCATCGGGAGTCTCGTC TCGGGCCTCCTCGCCCAACAGCACTTCCTCGTCTGAGGAAAACAACGACG ACGAAAGGAGCGCCAGCAGCTGCCGCAGTAGAAGTCGAGCAAACCCTATA ACTAGCACTCCGTCTCTGTACTCTTCTTCTTCTTCCTCCTCCTCCTCACC TTCCTCTTCTTCATCCTCCTCTTTTTCTTCCCCTCCCCAGTCGCAATTTT TCGATGCCTCGATGGCGAACAAGCCCTTCTCCTTCGCCGAGGAATTGCAG TGGCCCCGAAAACAAGACCAGCAGTTCTGGCAGCATCAGCCGCAGGAGCA GCCTCAGCCAGCCCAAACATTTTCGATACCGTTTACGCGTGCAGCAACCA CTCCTGCTGCCGCCCATTCGACCTCCTTGCTCGCCATGCTGCAGGAGGAA AAGGAGCAAGGCCGGCAGCAAGCAGCCCGCATCAAGGAGTTAGAGCTTGC TTGTGTCGAAATCCAGCAGGAGTGTCAGGTGGCAATTGCAGCGGCCCGCT TGGAGAGTCACGAGCTCAAGTGCATGCTGCGGCGGATGGCCTCTGAGAGT ACCTTCGCCGACGTCTTCCAGGTCTACGAGGCACACATTGCCCGCGTGGA GCAGGAGGTGCAAATATTGCGGGCGCGCAACATACACCTGGAGGAGCGTC GTCAGCAGCATCAATCTCACCAGCAGCAGCAGGAGCAGCAGCGGCAGCAG GAGGAGGAGGAGAAGGAGGAGGAGGAAGAGGAGGAGGGCCTTCAACCGAC GTCCGTAGGGCAGAACGATGATGGAGAAGGCCATGACCACAGCATCAACG ACGGTGAGGAGGATAGAGACGGTAGTATCCACCATAACGGCAACTCGTCT CTGGAGCGTCGAGGGCTTCTCTCGGTGGGCACGACTGCGGCAGCCAAACT CAGGCAGAGTCTGAAGGCCAGGTCCGATGTCGTCTACCACCACGGCAAGT GCCGAGGCCACGAATGCAAACCCTCCAGCAGCACAAATGCCAAGTCCAAG CACAGCATCAGCGGAGCCGTGAATGGCACACCAAAGCAGTATGAGGCCGG TAGATCCACTGCCACAGCATCGATGACTGCTTTGCGATGCAGAATCAAGG ACTTGCAGCGCCAGGTGGATGACTTCAAAAAGGAAACAGGAGAGCTGCGG CGACGGGAGCGACAATCTTTGGTGCAAAAGCGGGTAGTGGAGACGACATG GGCCCGCGTGATGAAGGTCCAGGCCATGGCCAAGGGGCTGGAGGGCAGCC TGGCTTCGAGTAGGTTGGAGGGTGCTCGTGCAGAGGCTCGGCTAGAGGAG GCAGAGGAGGAGATTCGAGTACTACGCCAGAGGGAGGCTGCCTTGGTTCT GGACCGTGACAAGTTATTGCTGGAACTCGATCTCCTGCACCGGAAACAGC TCGGTGGCGGTGGCAACGGCCCCTCGTCCCGGCAAGGTGGTGAGAGTAGG GAGACGAGATAA back to top
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